The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
This dataset deposition announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modeling, proteomics assay design and bioengineering. Instrument data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053.
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- Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Division
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Science Laboratory
- Publication Date:
- Report Number(s):
- PNNL-SA-108944
48582; KP1601010
- Grant/Contract Number:
- AC05-76RL01830
- Type:
- Accepted Manuscript
- Journal Name:
- Scientific Data, 2:Art. No. 150041
- Additional Journal Information:
- Journal Name: Scientific Data, 2:Art. No. 150041
- Research Org:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (US), Environmental Molecular Sciences Laboratory (EMSL)
- Sponsoring Org:
- USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Environmental Molecular Sciences Laboratory
- OSTI Identifier:
- 1213004
Payne, Samuel H., Monroe, Matthew E., Overall, Christopher C., Kiebel, Gary R., Degan, Michael G., Gibbons, Bryson C., Fujimoto, Grant M., Purvine, Samuel O., Adkins, Joshua N., Lipton, Mary S., and Smith, Richard D.. The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity. United States: N. p.,
Web. doi:10.1038/sdata.2015.41.
Payne, Samuel H., Monroe, Matthew E., Overall, Christopher C., Kiebel, Gary R., Degan, Michael G., Gibbons, Bryson C., Fujimoto, Grant M., Purvine, Samuel O., Adkins, Joshua N., Lipton, Mary S., & Smith, Richard D.. The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity. United States. doi:10.1038/sdata.2015.41.
Payne, Samuel H., Monroe, Matthew E., Overall, Christopher C., Kiebel, Gary R., Degan, Michael G., Gibbons, Bryson C., Fujimoto, Grant M., Purvine, Samuel O., Adkins, Joshua N., Lipton, Mary S., and Smith, Richard D.. 2015.
"The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity". United States.
doi:10.1038/sdata.2015.41. https://www.osti.gov/servlets/purl/1213004.
@article{osti_1213004,
title = {The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity},
author = {Payne, Samuel H. and Monroe, Matthew E. and Overall, Christopher C. and Kiebel, Gary R. and Degan, Michael G. and Gibbons, Bryson C. and Fujimoto, Grant M. and Purvine, Samuel O. and Adkins, Joshua N. and Lipton, Mary S. and Smith, Richard D.},
abstractNote = {This dataset deposition announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modeling, proteomics assay design and bioengineering. Instrument data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053.},
doi = {10.1038/sdata.2015.41},
journal = {Scientific Data, 2:Art. No. 150041},
number = ,
volume = ,
place = {United States},
year = {2015},
month = {8}
}
- Free Publicly Accessible Full Text
-
Accepted Manuscript (DOE)
- Publisher's Version of Record
- https://doi.org/10.1038/sdata.2015.41