Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator: A CASE STUDY IN
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journal
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August 2011 |
Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ
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journal
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September 2012 |
Dialogue on Reverse-Engineering Assessment and Methods: The DREAM of High-Throughput Pathway Inference
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journal
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October 2007 |
Module networks revisited: computational assessment and prioritization of model predictions
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journal
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January 2009 |
A Tight Link between Orthologs and Bidirectional Best Hits in Bacterial and Archaeal Genomes
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journal
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November 2012 |
Aerobic and anaerobic regulation in Rhodobacter sphaeroides 2.4.1: the role of the fnrL gene.
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journal
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November 1995 |
MEME: discovering and analyzing DNA and protein sequence motifs
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journal
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July 2006 |
Control of Photosystem Formation inRhodobacter sphaeroides
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journal
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June 1998 |
Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses
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journal
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September 2012 |
Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity
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journal
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May 2013 |
Postgenomic Adventures with Rhodobacter sphaeroides
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journal
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October 2007 |
Oxygen-insensitive synthesis of the photosynthetic membranes of Rhodobacter sphaeroides: a mutant histidine kinase.
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journal
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May 1995 |
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes
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journal
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April 2002 |
Molecular genetic analysis suggesting interactions between AppA and PpsR in regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1.
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journal
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January 1997 |
DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli
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journal
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January 2009 |
AppA, a Redox Regulator of Photosystem Formation in Rhodobacter sphaeroides 2.4.1, Is a Flavoprotein : IDENTIFICATION OF A NOVEL FAD BINDING DOMAIN
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journal
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December 1998 |
Pathways Involved in Reductant Distribution during Photobiological H 2 Production by Rhodobacter sphaeroides
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August 2011 |
Gene Ontology: tool for the unification of biology
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journal
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May 2000 |
Mining genome databases to identify and understand new gene regulatory systems
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journal
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April 2002 |
Role of the fnrL Gene in Photosystem Gene Expression and Photosynthetic Growth of Rhodobacter sphaeroides 2.4.1
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journal
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March 1998 |
The Pfam protein families database
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journal
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January 2004 |
Ferric uptake regulation protein acts as a repressor, employing iron(II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli
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journal
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August 1987 |
Cyclic AMP in prokaryotes.
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journal
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January 1992 |
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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journal
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June 2010 |
The oxygen-responsive transcriptional regulator FNR of Escherichia coli : the search for signals and reactions
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journal
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July 1997 |
AppA Is a Blue Light Photoreceptor that Antirepresses Photosynthesis Gene Expression in Rhodobacter sphaeroides
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journal
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September 2002 |
Validating module network learning algorithms using simulated data
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journal
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May 2007 |
iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network
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journal
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January 2011 |
Electron Partitioning During Light- and Nutrient-Powered Hydrogen Production by Rhodobacter sphaeroides
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journal
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January 2010 |
Co-regulation of lipoamide dehydrogenase and 2-oxoglutarate dehydrogenase synthesis in Escherichia coli : characterisation of an ArcA binding site in the lpd promoter
|
journal
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December 1998 |
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
|
journal
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January 2003 |
Reconstruction of microbial transcriptional regulatory networks
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journal
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February 2004 |
IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins
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journal
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December 2001 |
Making connections between novel transcription factors and their DNA motifs
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journal
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January 2005 |
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
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journal
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September 2003 |
In Vitro and In Vivo Analysis of the Role of PrrA in Rhodobacter sphaeroides 2.4.1 hemA Gene Expression
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journal
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April 2006 |
The Use of Chromatin Immunoprecipitation to Define PpsR Binding Activity in Rhodobacter sphaeroides 2.4.1
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journal
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August 2008 |
Reconstruction of the Core and Extended Regulons of Global Transcription Factors
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journal
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July 2010 |
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
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journal
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May 2003 |
Protein-protein interactions between CbbR and RegA (PrrA), transcriptional regulators of the cbb operons of Rhodobacter sphaeroides
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journal
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February 2009 |
Identifying the conserved network of cis-regulatory sites of a eukaryotic genome
|
journal
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November 2005 |
Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges
|
journal
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February 2010 |
The catabolite repressor/activator (Cra) protein of enteric bacteria.
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journal
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June 1996 |
More robust detection of motifs in coexpressed genes by using phylogenetic information
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journal
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March 2006 |
The arginine regulon of Escherichia coli: whole-system transcriptome analysis discovers new genes and provides an integrated view of arginine regulation
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journal
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November 2006 |
An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks
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dataset
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January 2014 |
Assessing computational tools for the discovery of transcription factor binding sites
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journal
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January 2005 |
Identifying global regulators in transcriptional regulatory networks in bacteria
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journal
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October 2003 |
Role of the Global Transcriptional Regulator PrrA in Rhodobacter sphaeroides 2.4.1: Combined Transcriptome and Proteome Analysis
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journal
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May 2008 |
Sequencing, chromosomal inactivation, and functional expression in Escherichia coli of ppsR, a gene which represses carotenoid and bacteriochlorophyll synthesis in Rhodobacter sphaeroides.
|
journal
|
May 1994 |
MEME SUITE: tools for motif discovery and searching
|
journal
|
May 2009 |
appA, a novel gene encoding a trans-acting factor involved in the regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1.
|
journal
|
August 1995 |
Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover
|
journal
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July 2002 |
Wisdom of crowds for robust gene network inference
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journal
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July 2012 |
The Bacterial Response Regulator ArcA Uses a Diverse Binding Site Architecture to Regulate Carbon Oxidation Globally
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journal
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October 2013 |
The regulatory link between carbon and nitrogen metabolism in Bacillus subtilis: regulation of the gltAB operon by the catabolite control protein CcpA
|
journal
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October 2003 |
Genetic evidence that PpsR from Rhodobacter sphaeroides 2.4.1 functions as a repressor of puc and bchF expression.
|
journal
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March 1995 |
Visualization, documentation, analysis, and communication of large-scale gene regulatory networks
|
journal
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April 2009 |
Inferring the transcriptional network of Bacillus subtilis
|
journal
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January 2009 |
Coenzyme Q10 production in a 150-l reactor by a mutant strain of Rhodobacter sphaeroides
|
journal
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February 2010 |
Quantifying similarity between motifs
|
journal
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January 2007 |
Global insights into energetic and metabolic networks in Rhodobacter sphaeroides
|
journal
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January 2013 |
Inferring gene regulatory networks by ANOVA
|
journal
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March 2012 |
prrA, a putative response regulator involved in oxygen regulation of photosynthesis gene expression in Rhodobacter sphaeroides.
|
journal
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January 1994 |
IscR acts as an activator in response to oxidative stress for the suf operon encoding Fe-S assembly proteins : Positive regulation of the
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journal
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May 2006 |
Multiple molecular levels of cell cycle regulation
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journal
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April 1994 |
Constrained Binding Site Diversity within Families of Transcription Factors Enhances Pattern Discovery Bioinformatics
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journal
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April 2004 |
A novel method for accurate operon predictions in all sequenced prokaryotes
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journal
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February 2005 |
An efficient algorithm for large-scale detection of protein families
|
journal
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April 2002 |
Solution structure and DNA binding of the effector domain from the global regulator PrrA (RegA) from Rhodobacter sphaeroides: insights into DNA binding specificity
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journal
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December 2003 |
MochiView: versatile software for genome browsing and DNA motif analysis
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journal
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April 2010 |
Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
|
journal
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November 2009 |
Organization and Evolution of the Biological Response to Singlet Oxygen Stress
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journal
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November 2008 |
Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome
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journal
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December 2012 |
Revealing strengths and weaknesses of methods for gene network inference
|
journal
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March 2010 |
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
|
journal
|
January 2007 |
Global Analysis of Photosynthesis Transcriptional Regulatory Networks
|
journal
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December 2014 |
Comparative Genomic Reconstruction of Transcriptional Regulatory Networks in Bacteria
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journal
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July 2007 |
Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima : Galacturonate catabolism
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journal
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August 2012 |
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
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journal
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November 2010 |
Advantages and limitations of current network inference methods
|
journal
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August 2010 |
RirA, an iron-responsive regulator in the symbiotic bacterium Rhizobium leguminosarum
|
journal
|
December 2002 |
An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks
|
dataset
|
January 2014 |
Multiple molecular levels of cell cycle regulation
|
journal
|
April 1994 |
Coenzyme Q10 production in a 150-l reactor by a mutant strain of Rhodobacter sphaeroides
|
journal
|
February 2010 |
Visualization, documentation, analysis, and communication of large-scale gene regulatory networks
|
journal
|
April 2009 |
Reconstruction of microbial transcriptional regulatory networks
|
journal
|
February 2004 |
Organization and Evolution of the Biological Response to Singlet Oxygen Stress
|
journal
|
November 2008 |
Identifying global regulators in transcriptional regulatory networks in bacteria
|
journal
|
October 2003 |
Ferric uptake regulation protein acts as a repressor, employing iron(II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli
|
journal
|
August 1987 |
Comparative Genomic Reconstruction of Transcriptional Regulatory Networks in Bacteria
|
journal
|
July 2007 |
Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
|
journal
|
November 2009 |
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
|
journal
|
May 2003 |
Wisdom of crowds for robust gene network inference
|
journal
|
July 2012 |
Advantages and limitations of current network inference methods
|
journal
|
August 2010 |
Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity
|
journal
|
May 2013 |
Inferring the transcriptional network of Bacillus subtilis
|
journal
|
January 2009 |
Identifying the conserved network of cis-regulatory sites of a eukaryotic genome
|
journal
|
November 2005 |
Revealing strengths and weaknesses of methods for gene network inference
|
journal
|
March 2010 |
Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ
|
journal
|
September 2012 |
IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins
|
journal
|
December 2001 |
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes
|
journal
|
April 2002 |
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
|
journal
|
January 2003 |
Inferring gene regulatory networks by ANOVA
|
journal
|
March 2012 |
A Tight Link between Orthologs and Bidirectional Best Hits in Bacterial and Archaeal Genomes
|
journal
|
November 2012 |
An efficient algorithm for large-scale detection of protein families
|
journal
|
April 2002 |
Solution structure and DNA binding of the effector domain from the global regulator PrrA (RegA) from Rhodobacter sphaeroides: insights into DNA binding specificity
|
journal
|
December 2003 |
The Pfam protein families database
|
journal
|
January 2004 |
A novel method for accurate operon predictions in all sequenced prokaryotes
|
journal
|
February 2005 |
MEME SUITE: tools for motif discovery and searching
|
journal
|
May 2009 |
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
|
journal
|
November 2010 |
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
|
journal
|
June 2010 |
Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover
|
journal
|
July 2002 |
The regulatory link between carbon and nitrogen metabolism in Bacillus subtilis: regulation of the gltAB operon by the catabolite control protein CcpA
|
journal
|
October 2003 |
The arginine regulon of Escherichia coli: whole-system transcriptome analysis discovers new genes and provides an integrated view of arginine regulation
|
journal
|
November 2006 |
Making connections between novel transcription factors and their DNA motifs
|
journal
|
January 2005 |
Protein-protein interactions between CbbR and RegA (PrrA), transcriptional regulators of the cbb operons of Rhodobacter sphaeroides
|
journal
|
February 2009 |
Co-regulation of lipoamide dehydrogenase and 2-oxoglutarate dehydrogenase synthesis in Escherichia coli : characterisation of an ArcA binding site in the lpd promoter
|
journal
|
December 1998 |
prrA, a putative response regulator involved in oxygen regulation of photosynthesis gene expression in Rhodobacter sphaeroides.
|
journal
|
January 1994 |
Sequencing, chromosomal inactivation, and functional expression in Escherichia coli of ppsR, a gene which represses carotenoid and bacteriochlorophyll synthesis in Rhodobacter sphaeroides.
|
journal
|
May 1994 |
Oxygen-insensitive synthesis of the photosynthetic membranes of Rhodobacter sphaeroides: a mutant histidine kinase.
|
journal
|
May 1995 |
appA, a novel gene encoding a trans-acting factor involved in the regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1.
|
journal
|
August 1995 |
Aerobic and anaerobic regulation in Rhodobacter sphaeroides 2.4.1: the role of the fnrL gene.
|
journal
|
November 1995 |
Genetic evidence that PpsR from Rhodobacter sphaeroides 2.4.1 functions as a repressor of puc and bchF expression.
|
journal
|
March 1995 |
The catabolite repressor/activator (Cra) protein of enteric bacteria.
|
journal
|
June 1996 |
Molecular genetic analysis suggesting interactions between AppA and PpsR in regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1.
|
journal
|
January 1997 |
Postgenomic Adventures with Rhodobacter sphaeroides
|
journal
|
October 2007 |
Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering
|
journal
|
December 2007 |
MochiView: versatile software for genome browsing and DNA motif analysis
|
journal
|
April 2010 |
Global insights into energetic and metabolic networks in Rhodobacter sphaeroides
|
journal
|
January 2013 |
DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli
|
journal
|
January 2009 |
Dialogue on Reverse-Engineering Assessment and Methods: The DREAM of High-Throughput Pathway Inference
|
journal
|
October 2007 |
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
|
journal
|
January 2007 |
Reconstruction of the Core and Extended Regulons of Global Transcription Factors
|
journal
|
July 2010 |
Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses
|
journal
|
September 2012 |
Global Analysis of Photosynthesis Transcriptional Regulatory Networks
|
journal
|
December 2014 |
Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges
|
journal
|
February 2010 |
Enhancement of Vaccinia Virus Based Oncolysis with Histone Deacetylase Inhibitors
|
journal
|
December 2010 |
An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks
|
dataset
|
January 2014 |