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Title: Synchrotron IR microspectroscopy for protein structure analysis: Potential and questions

Abstract

Synchrotron radiation-based Fourier transform infrared microspectroscopy (S-FTIR) has been developed as a rapid, direct, non-destructive, bioanalytical technique. This technique takes advantage of synchrotron light brightness and small effective source size and is capable of exploring the molecular chemical make-up within microstructures of a biological tissue without destruction of inherent structures at ultra-spatial resolutions within cellular dimension. To date there has been very little application of this advanced technique to the study of pure protein inherent structure at a cellular level in biological tissues. In this review, a novel approach was introduced to show the potential of the newly developed, advanced synchrotron-based analytical technology, which can be used to localize relatively “pure“ protein in the plant tissues and relatively reveal protein inherent structure and protein molecular chemical make-up within intact tissue at cellular and subcellular levels. Several complex protein IR spectra data analytical techniques (Gaussian and Lorentzian multi-component peak modeling, univariate and multivariate analysis, principal component analysis (PCA), and hierarchical cluster analysis (CLA) are employed to relatively reveal features of protein inherent structure and distinguish protein inherent structure differences between varieties/species and treatments in plant tissues. By using a multi-peak modeling procedure, RELATIVE estimates (but not EXACT determinations) for protein secondarymore » structure analysis can be made for comparison purpose. The issues of pro- and anti-multi-peaking modeling/fitting procedure for relative estimation of protein structure were discussed. By using the PCA and CLA analyses, the plant molecular structure can be qualitatively separate one group from another, statistically, even though the spectral assignments are not known. The synchrotron-based technology provides a new approach for protein structure research in biological tissues at ultraspatial resolutions.« less

Authors:
 [1]
  1. College of Agriculture and Bioresources, University of Saskatchewan, 51 Campus Drive, Saskatoon, S7N 5A8, Canada, College of Agriculture and Bioresources, University of Saskatchewan, 6D34 Agriculture Building, 51 Campus Drive, Saskatoon, S7N 5A8, Canada
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1197994
Grant/Contract Number:  
AC02-98CH10886
Resource Type:
Published Article
Journal Name:
Spectroscopy
Additional Journal Information:
Journal Name: Spectroscopy Journal Volume: 20 Journal Issue: 5,6; Journal ID: ISSN 0712-4813
Publisher:
Hindawi Publishing Corporation
Country of Publication:
Country unknown/Code not available
Language:
English

Citation Formats

Yu, Peiqiang. Synchrotron IR microspectroscopy for protein structure analysis: Potential and questions. Country unknown/Code not available: N. p., 2006. Web. doi:10.1155/2006/263634.
Yu, Peiqiang. Synchrotron IR microspectroscopy for protein structure analysis: Potential and questions. Country unknown/Code not available. doi:10.1155/2006/263634.
Yu, Peiqiang. Sun . "Synchrotron IR microspectroscopy for protein structure analysis: Potential and questions". Country unknown/Code not available. doi:10.1155/2006/263634.
@article{osti_1197994,
title = {Synchrotron IR microspectroscopy for protein structure analysis: Potential and questions},
author = {Yu, Peiqiang},
abstractNote = {Synchrotron radiation-based Fourier transform infrared microspectroscopy (S-FTIR) has been developed as a rapid, direct, non-destructive, bioanalytical technique. This technique takes advantage of synchrotron light brightness and small effective source size and is capable of exploring the molecular chemical make-up within microstructures of a biological tissue without destruction of inherent structures at ultra-spatial resolutions within cellular dimension. To date there has been very little application of this advanced technique to the study of pure protein inherent structure at a cellular level in biological tissues. In this review, a novel approach was introduced to show the potential of the newly developed, advanced synchrotron-based analytical technology, which can be used to localize relatively “pure“ protein in the plant tissues and relatively reveal protein inherent structure and protein molecular chemical make-up within intact tissue at cellular and subcellular levels. Several complex protein IR spectra data analytical techniques (Gaussian and Lorentzian multi-component peak modeling, univariate and multivariate analysis, principal component analysis (PCA), and hierarchical cluster analysis (CLA) are employed to relatively reveal features of protein inherent structure and distinguish protein inherent structure differences between varieties/species and treatments in plant tissues. By using a multi-peak modeling procedure, RELATIVE estimates (but not EXACT determinations) for protein secondary structure analysis can be made for comparison purpose. The issues of pro- and anti-multi-peaking modeling/fitting procedure for relative estimation of protein structure were discussed. By using the PCA and CLA analyses, the plant molecular structure can be qualitatively separate one group from another, statistically, even though the spectral assignments are not known. The synchrotron-based technology provides a new approach for protein structure research in biological tissues at ultraspatial resolutions.},
doi = {10.1155/2006/263634},
journal = {Spectroscopy},
number = 5,6,
volume = 20,
place = {Country unknown/Code not available},
year = {2006},
month = {1}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1155/2006/263634

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Cited by: 51 works
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