Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR

Wisedchaisri, Goragot; Dranow, David M.; Lie, Thomas J.; Bonanno, Jeffrey B.; Patskovsky, Yury; Ozyurt, Sinem A.; Sauder, J. Michael; Almo, Steven C.; Wasserman, Stephen R.; Burley, Stephen K.; Leigh, John A.; Gonen, Tamir

doi:10.1016/j.str.2010.08.014

Title: Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR

Authors:: Wisedchaisri, Goragot; Dranow, David M.; Lie, Thomas J.; Bonanno, Jeffrey B.; Patskovsky, Yury; Ozyurt, Sinem A.; Sauder, J. Michael; Almo, Steven C.; Wasserman, Stephen R.; Burley, Stephen K.; Leigh, John A.; Gonen, Tamir

Publication Date:: Mon Nov 01 00:00:00 EDT 2010

Sponsoring Org.:: USDOE Office of Science (SC), Basic Energy Sciences (BES)

OSTI Identifier:: 1197945

Resource Type:: Published Article

Journal Name:: Structure

Additional Journal Information:: Journal Name: Structure Journal Volume: 18 Journal Issue: 11; Journal ID: ISSN 0969-2126

Publisher:: Elsevier

Country of Publication:: United Kingdom

Language:: English

Citation Formats


                    Wisedchaisri, Goragot, Dranow, David M., Lie, Thomas J., Bonanno, Jeffrey B., Patskovsky, Yury, Ozyurt, Sinem A., Sauder, J. Michael, Almo, Steven C., Wasserman, Stephen R., Burley, Stephen K., Leigh, John A., and Gonen, Tamir. Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR.  United Kingdom: N. p., 2010. 
Web.  doi:10.1016/j.str.2010.08.014.

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                    Wisedchaisri, Goragot, Dranow, David M., Lie, Thomas J., Bonanno, Jeffrey B., Patskovsky, Yury, Ozyurt, Sinem A., Sauder, J. Michael, Almo, Steven C., Wasserman, Stephen R., Burley, Stephen K., Leigh, John A., & Gonen, Tamir. Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR.  United Kingdom.  https://doi.org/10.1016/j.str.2010.08.014

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                    Wisedchaisri, Goragot, Dranow, David M., Lie, Thomas J., Bonanno, Jeffrey B., Patskovsky, Yury, Ozyurt, Sinem A., Sauder, J. Michael, Almo, Steven C., Wasserman, Stephen R., Burley, Stephen K., Leigh, John A., and Gonen, Tamir. Mon .  
"Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR".  United Kingdom.  https://doi.org/10.1016/j.str.2010.08.014.

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@article{osti_1197945,

  title        = {Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR},

  author       = {Wisedchaisri, Goragot and Dranow, David M. and Lie, Thomas J. and Bonanno, Jeffrey B. and Patskovsky, Yury and Ozyurt, Sinem A. and Sauder, J. Michael and Almo, Steven C. and Wasserman, Stephen R. and Burley, Stephen K. and Leigh, John A. and Gonen, Tamir},

  abstractNote = {},

  doi          = {10.1016/j.str.2010.08.014},

  journal      = {Structure},

  number       = 11,

  volume       = 18,

  place        = {United Kingdom},

  year         = {Mon Nov 01 00:00:00 EDT 2010},

  month        = {Mon Nov 01 00:00:00 EDT 2010}

}

Copy to clipboard

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Title: Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR

Citation Formats

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome journal, November 1998

Tools for comparative protein structure modeling and analysis journal, July 2003

HKL2MAP : a graphical user interface for macromolecular phasing with SHELX programs journal, September 2004

Refinement of Macromolecular Structures by the Maximum-Likelihood Method journal, May 1997

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Structure, function and evolution of bacterial ferredoxins journal, April 1988

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Regulation of nitrogenase by 2-oxoglutarate-reversible, direct binding of a PII-like nitrogen sensor protein to dinitrogenase journal, June 2006

Crystal Structures, Metal Activation, and DNA-Binding Properties of Two-Domain IdeR from Mycobacterium tuberculosis † , ‡ journal, January 2007

Nitrogen Regulation in Bacteria and Archaea journal, October 2007

2-Oxoglutarate and the PII homologues NifI 1 and NifI 2 regulate nitrogenase activity in cell extracts of Methanococcus maripaludis: Nitrogenase activity in M. maripaludis extracts journal, April 2005

Automated docking of substrates to proteins by simulated annealing journal, January 1990

Overlapping repressor binding sites regulate expression of theMethanococcus maripaludis glnK1operon journal, December 2009

Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation11Edited by I. A. Wilson journal, March 2001

Coot model-building tools for molecular graphics journal, November 2004

A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis journal, December 2002

Regulation of nif Expression in Methanococcus maripaludis journal, February 2005

Functional, biochemical and genetic diversity of prokaryotic nitrate reductases journal, February 2001

The Prototypical H+/Galactose Symporter GalP Assembles into Functional Trimers journal, February 2010

A semiempirical free energy force field with charge-based desolvation journal, January 2007

Searching protein structure databases with DaliLite v.3 journal, September 2008

Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake journal, January 2007

Automated structure solution, density modification and model building journal, October 2002

Crystal Structure of an IdeR–DNA Complex Reveals a Conformational Change in Activated IdeR for Base-specific Interactions journal, September 2004

Structure and Mechanism of Anthocyanidin Synthase from Arabidopsis thaliana journal, January 2002

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Crystal Structure of the Iron-dependent Regulator from Mycobacterium tuberculosis at 2.0-Å Resolution Reveals the Src Homology Domain 3-like Fold and Metal Binding Function of the Third Domain journal, October 2000

Steps towards an integrated view of nitrogen metabolism journal, April 2002

UCSF Chimera?A visualization system for exploratory research and analysis journal, January 2004

Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli journal, May 1987

The Active Conformation of Glutamate Synthase and its Binding to Ferredoxin journal, June 2003

Perspectives in Biological Nitrogen Fixation Research journal, July 2008

Genetic Screen for Regulatory Mutations in Methanococcus maripaludis and Its Use in Identification of Induction-Deficient Mutants of the Euryarchaeal Repressor NrpR journal, October 2007

SPIDER and WEB: Processing and Visualization of Images in 3D Electron Microscopy and Related Fields journal, January 1996

xdlMAPMAN and xdlDATAMAN – Programs for Reformatting, Analysis and Manipulation of Biomacromolecular Electron-Density Maps and Reflection Data Sets journal, July 1996

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
journal, November 1998

Tools for comparative protein structure modeling and analysis
journal, July 2003

HKL2MAP : a graphical user interface for macromolecular phasing with SHELX programs
journal, September 2004

Refinement of Macromolecular Structures by the Maximum-Likelihood Method
journal, May 1997

Automated protein model building combined with iterative structure refinement
journal, May 1999

Structure, function and evolution of bacterial ferredoxins
journal, April 1988

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
journal, December 2009

Fourier shell correlation threshold criteria
journal, September 2005

Regulation of nitrogenase by 2-oxoglutarate-reversible, direct binding of a PII-like nitrogen sensor protein to dinitrogenase
journal, June 2006

Crystal Structures, Metal Activation, and DNA-Binding Properties of Two-Domain IdeR from Mycobacterium tuberculosis ^† ^, ^‡
journal, January 2007

Nitrogen Regulation in Bacteria and Archaea
journal, October 2007

2-Oxoglutarate and the PII homologues NifI ₁ and NifI ₂ regulate nitrogenase activity in cell extracts of Methanococcus maripaludis: Nitrogenase activity in M. maripaludis extracts
journal, April 2005

Automated docking of substrates to proteins by simulated annealing
journal, January 1990

Overlapping repressor binding sites regulate expression of theMethanococcus maripaludis glnK₁operon
journal, December 2009

Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation11Edited by I. A. Wilson
journal, March 2001

Coot model-building tools for molecular graphics
journal, November 2004

A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis
journal, December 2002

Regulation of nif Expression in Methanococcus maripaludis
journal, February 2005

Functional, biochemical and genetic diversity of prokaryotic nitrate reductases
journal, February 2001

The Prototypical H+/Galactose Symporter GalP Assembles into Functional Trimers
journal, February 2010

A semiempirical free energy force field with charge-based desolvation
journal, January 2007

Searching protein structure databases with DaliLite v.3
journal, September 2008

Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake
journal, January 2007

Automated structure solution, density modification and model building
journal, October 2002

Crystal Structure of an IdeR–DNA Complex Reveals a Conformational Change in Activated IdeR for Base-specific Interactions
journal, September 2004

Structure and Mechanism of Anthocyanidin Synthase from Arabidopsis thaliana
journal, January 2002

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
journal, November 1998

Crystal Structure of the Iron-dependent Regulator from Mycobacterium tuberculosis at 2.0-Å Resolution Reveals the Src Homology Domain 3-like Fold and Metal Binding Function of the Third Domain
journal, October 2000

Steps towards an integrated view of nitrogen metabolism
journal, April 2002

UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004

Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli
journal, May 1987

The Active Conformation of Glutamate Synthase and its Binding to Ferredoxin
journal, June 2003

Perspectives in Biological Nitrogen Fixation Research
journal, July 2008

Genetic Screen for Regulatory Mutations in Methanococcus maripaludis and Its Use in Identification of Induction-Deficient Mutants of the Euryarchaeal Repressor NrpR
journal, October 2007

SPIDER and WEB: Processing and Visualization of Images in 3D Electron Microscopy and Related Fields
journal, January 1996

xdlMAPMAN and xdlDATAMAN – Programs for Reformatting, Analysis and Manipulation of Biomacromolecular Electron-Density Maps and Reflection Data Sets
journal, July 1996