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Title: A Hybrid Multiscale Framework for Subsurface Flow and Transport Simulations

Abstract

Extensive research efforts have been invested in reducing model errors to improve the predictive ability of biogeochemical earth and environmental system simulators, with applications ranging from contaminant transport and remediation to impacts of biogeochemical elemental cycling (e.g., carbon and nitrogen) on local ecosystems and regional to global climate. While the bulk of this research has focused on improving model parameterizations in the face of observational limitations, the more challenging type of model error/uncertainty to identify and quantify is model structural error which arises from incorrect mathematical representations of (or failure to consider) important physical, chemical, or biological processes, properties, or system states in model formulations. While improved process understanding can be achieved through scientific study, such understanding is usually developed at small scales. Process-based numerical models are typically designed for a particular characteristic length and time scale. For application-relevant scales, it is generally necessary to introduce approximations and empirical parameterizations to describe complex systems or processes. This single-scale approach has been the best available to date because of limited understanding of process coupling combined with practical limitations on system characterization and computation. While computational power is increasing significantly and our understanding of biological and environmental processes at fundamental scales ismore » accelerating, using this information to advance our knowledge of the larger system behavior requires the development of multiscale simulators. Accordingly there has been much recent interest in novel multiscale methods in which microscale and macroscale models are explicitly coupled in a single hybrid multiscale simulation. A limited number of hybrid multiscale simulations have been developed for biogeochemical earth systems, but they mostly utilize application-specific and sometimes ad-hoc approaches for model coupling. We are developing a generalized approach to hierarchical model coupling designed for high-performance computational systems, based on the Swift computing workflow framework. In this presentation we will describe the generalized approach and provide two use cases: 1) simulation of a mixing-controlled biogeochemical reaction coupling pore- and continuum-scale models, and 2) simulation of biogeochemical impacts of groundwater – river water interactions coupling fine- and coarse-grid model representations. This generalized framework can be customized for use with any pair of linked models (microscale and macroscale) with minimal intrusiveness to the at-scale simulators. It combines a set of python scripts with the Swift workflow environment to execute a complex multiscale simulation utilizing an approach similar to the well-known Heterogeneous Multiscale Method. User customization is facilitated through user-provided input and output file templates and processing function scripts, and execution within a high-performance computing environment is handled by Swift, such that minimal to no user modification of at-scale codes is required.« less

Authors:
 [1];  [1];  [1];  [2]
  1. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
  2. Sandia National Laboratory, Albuquerque, NM (United States)
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab. (EMSL); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1194283
Alternate Identifier(s):
OSTI ID: 1214668
Report Number(s):
PNNL-SA-107927
Journal ID: ISSN 1877-0509; 47712; KP1704020
Grant/Contract Number:  
AC05-76RL01830; AC04-94AL85000
Resource Type:
Accepted Manuscript
Journal Name:
Procedia Computer Science
Additional Journal Information:
Journal Volume: 51; Journal Issue: C; Journal ID: ISSN 1877-0509
Publisher:
Elsevier
Country of Publication:
United States
Language:
English
Subject:
54 ENVIRONMENTAL SCIENCES; Environmental Molecular Sciences Laboratory; 58 GEOSCIENCES; 97 MATHEMATICS AND COMPUTING

Citation Formats

Scheibe, Timothy D., Yang, Xiaofan, Chen, Xingyuan, and Hammond, Glenn E. A Hybrid Multiscale Framework for Subsurface Flow and Transport Simulations. United States: N. p., 2015. Web. doi:10.1016/j.procs.2015.05.276.
Scheibe, Timothy D., Yang, Xiaofan, Chen, Xingyuan, & Hammond, Glenn E. A Hybrid Multiscale Framework for Subsurface Flow and Transport Simulations. United States. https://doi.org/10.1016/j.procs.2015.05.276
Scheibe, Timothy D., Yang, Xiaofan, Chen, Xingyuan, and Hammond, Glenn E. Mon . "A Hybrid Multiscale Framework for Subsurface Flow and Transport Simulations". United States. https://doi.org/10.1016/j.procs.2015.05.276. https://www.osti.gov/servlets/purl/1194283.
@article{osti_1194283,
title = {A Hybrid Multiscale Framework for Subsurface Flow and Transport Simulations},
author = {Scheibe, Timothy D. and Yang, Xiaofan and Chen, Xingyuan and Hammond, Glenn E.},
abstractNote = {Extensive research efforts have been invested in reducing model errors to improve the predictive ability of biogeochemical earth and environmental system simulators, with applications ranging from contaminant transport and remediation to impacts of biogeochemical elemental cycling (e.g., carbon and nitrogen) on local ecosystems and regional to global climate. While the bulk of this research has focused on improving model parameterizations in the face of observational limitations, the more challenging type of model error/uncertainty to identify and quantify is model structural error which arises from incorrect mathematical representations of (or failure to consider) important physical, chemical, or biological processes, properties, or system states in model formulations. While improved process understanding can be achieved through scientific study, such understanding is usually developed at small scales. Process-based numerical models are typically designed for a particular characteristic length and time scale. For application-relevant scales, it is generally necessary to introduce approximations and empirical parameterizations to describe complex systems or processes. This single-scale approach has been the best available to date because of limited understanding of process coupling combined with practical limitations on system characterization and computation. While computational power is increasing significantly and our understanding of biological and environmental processes at fundamental scales is accelerating, using this information to advance our knowledge of the larger system behavior requires the development of multiscale simulators. Accordingly there has been much recent interest in novel multiscale methods in which microscale and macroscale models are explicitly coupled in a single hybrid multiscale simulation. A limited number of hybrid multiscale simulations have been developed for biogeochemical earth systems, but they mostly utilize application-specific and sometimes ad-hoc approaches for model coupling. We are developing a generalized approach to hierarchical model coupling designed for high-performance computational systems, based on the Swift computing workflow framework. In this presentation we will describe the generalized approach and provide two use cases: 1) simulation of a mixing-controlled biogeochemical reaction coupling pore- and continuum-scale models, and 2) simulation of biogeochemical impacts of groundwater – river water interactions coupling fine- and coarse-grid model representations. This generalized framework can be customized for use with any pair of linked models (microscale and macroscale) with minimal intrusiveness to the at-scale simulators. It combines a set of python scripts with the Swift workflow environment to execute a complex multiscale simulation utilizing an approach similar to the well-known Heterogeneous Multiscale Method. User customization is facilitated through user-provided input and output file templates and processing function scripts, and execution within a high-performance computing environment is handled by Swift, such that minimal to no user modification of at-scale codes is required.},
doi = {10.1016/j.procs.2015.05.276},
journal = {Procedia Computer Science},
number = C,
volume = 51,
place = {United States},
year = {Mon Jun 01 00:00:00 EDT 2015},
month = {Mon Jun 01 00:00:00 EDT 2015}
}

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Works referenced in this record:

On breakdown of macroscopic models of mixing-controlled heterogeneous reactions in porous media
journal, November 2009


Distributed Multiscale Computations Using the MAPPER Framework
journal, January 2013


Foundations of distributed multiscale computing: Formalization, specification, and analysis
journal, April 2013

  • Borgdorff, Joris; Falcone, Jean-Luc; Lorenz, Eric
  • Journal of Parallel and Distributed Computing, Vol. 73, Issue 4
  • DOI: 10.1016/j.jpdc.2012.12.011

Homogenizability conditions for multicomponent reactive transport
journal, December 2013


MML: towards a Multiscale Modeling Language
journal, May 2010


A Component-Based Framework for Smoothed Particle Hydrodynamics Simulations of Reactive Fluid Flow in Porous Media
journal, January 2010

  • Palmer, Bruce; Gurumoorthi, Vidhya; Tartakovsky, Alexandre
  • The International Journal of High Performance Computing Applications, Vol. 24, Issue 2
  • DOI: 10.1177/1094342009358415

An Analysis Platform for Multiscale Hydrogeologic Modeling with Emphasis on Hybrid Multiscale Methods
journal, March 2014

  • Scheibe, Timothy D.; Murphy, Ellyn M.; Chen, Xingyuan
  • Groundwater, Vol. 53, Issue 1
  • DOI: 10.1111/gwat.12179

Mixing-induced precipitation: Experimental study and multiscale numerical analysis: MIXING-INDUCED PRECIPITATION
journal, June 2008

  • Tartakovsky, A. M.; Redden, G.; Lichtner, P. C.
  • Water Resources Research, Vol. 44, Issue 6
  • DOI: 10.1029/2006WR005725

Dimension reduction numerical closure method for advection–diffusion-reaction systems
journal, December 2011


Swift: A language for distributed parallel scripting
journal, September 2011


The role of scaling laws in upscaling
journal, May 2009


Persistence of uranium groundwater plumes: Contrasting mechanisms at two DOE sites in the groundwater–river interaction zone
journal, April 2013


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