Motional displacements in proteins: The origin of wave-vector-dependent values

Vural, Derya; Hong, Liang; Smith, Jeremy C.; Glyde, Henry R.

doi:10.1103/PhysRevE.91.052705

Title: Motional displacements in proteins: The origin of wave-vector-dependent values

Authors:: Vural, Derya; Hong, Liang; Smith, Jeremy C.; Glyde, Henry R.

Publication Date:: Thu May 14 00:00:00 EDT 2015

Sponsoring Org.:: USDOE Office of Science (SC), Basic Energy Sciences (BES)

OSTI Identifier:: 1179756

Grant/Contract Number:: ER46680

Resource Type:: Publisher's Accepted Manuscript

Journal Name:: Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics

Additional Journal Information:: Journal Name: Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics Journal Volume: 91 Journal Issue: 5; Journal ID: ISSN 1539-3755

Publisher:: American Physical Society

Country of Publication:: United States

Language:: English

Citation Formats


                    Vural, Derya, Hong, Liang, Smith, Jeremy C., and Glyde, Henry R. Motional displacements in proteins: The origin of wave-vector-dependent values.  United States: N. p., 2015. 
Web.  doi:10.1103/PhysRevE.91.052705.

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                    Vural, Derya, Hong, Liang, Smith, Jeremy C., & Glyde, Henry R. Motional displacements in proteins: The origin of wave-vector-dependent values.  United States.  https://doi.org/10.1103/PhysRevE.91.052705

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                    Vural, Derya, Hong, Liang, Smith, Jeremy C., and Glyde, Henry R. Thu .  
"Motional displacements in proteins: The origin of wave-vector-dependent values".  United States.  https://doi.org/10.1103/PhysRevE.91.052705.

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@article{osti_1179756,

  title        = {Motional displacements in proteins: The origin of wave-vector-dependent values},

  author       = {Vural, Derya and Hong, Liang and Smith, Jeremy C. and Glyde, Henry R.},

  abstractNote = {},

  doi          = {10.1103/PhysRevE.91.052705},

  journal      = {Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics},

  number       = 5,

  volume       = 91,

  place        = {United States},

  year         = {Thu May 14 00:00:00 EDT 2015},

  month        = {Thu May 14 00:00:00 EDT 2015}

}

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Similar Records

Title: Motional displacements in proteins: The origin of wave-vector-dependent values

Citation Formats

Protein Dynamics and Stability: The Distribution of Atomic Fluctuations in Thermophilic and Mesophilic Dihydrofolate Reductase Derived Using Elastic Incoherent Neutron Scattering journal, June 2008

Intrinsic mean-square displacements in proteins journal, July 2012

The structures of the monoclinic and orthorhombic forms of hen egg-white lysozyme at 6 Å resolution journal, March 1982

Dynamics of heparan sulfate explored by neutron scattering journal, January 2010

Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation journal, April 2007

Energy resolution and dynamical heterogeneity effects on elastic incoherent neutron scattering from molecular systems journal, February 2003

LINCS: A linear constraint solver for molecular simulations journal, September 1997

Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering journal, August 1990

Protein Flexibility from the Dynamical Transition:A Force Constant Analysis journal, March 2001

Effect of conformational states on protein dynamical transition journal, January 2010

Impact of anisotropic atomic motions in proteins on powder-averaged incoherent neutron scattering intensities journal, December 2012

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation journal, February 2008

Effect of the Environment on the Protein Dynamical Transition: A Neutron Scattering Study journal, August 2002

Motional heterogeneity in human acetylcholinesterase revealed by a non-Gaussian model for elastic incoherent neutron scattering journal, October 2013

Relaxation dynamics of lysozyme in solution under pressure: Combining molecular dynamics simulations and quasielastic neutron scattering journal, April 2008

Incoherent neutron scattering functions for diffusion inside two concentric spheres journal, July 2000

Logarithmic Decay in Single-Particle Relaxation of Hydrated Lysozyme Powder journal, September 2009

Quasielastic neutron scattering in soft matter journal, December 2009

Enzyme Dynamics and Activity: Time-Scale Dependence of Dynamical Transitions in Glutamate Dehydrogenase Solution journal, October 1999

Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations journal, December 2006

Polymorphic transitions in single crystals: A new molecular dynamics method journal, December 1981

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin journal, March 1988

Influence of Hydration on the Dynamics of Lysozyme journal, October 2006

Influence of pressure on the slow and fast fractional relaxation dynamics in lysozyme: A simulation study journal, February 2008

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew journal, May 2004

How Soft Is a Protein? A Protein Dynamics Force Constant Measured by Neutron Scattering journal, June 2000

Canonical dynamics: Equilibrium phase-space distributions journal, March 1985

Dynamics of a globular protein and its hydration water studied by neutron scattering and MD simulations journal, January 2010

Quantitative model for the heterogeneity of atomic position fluctuations in proteins: A simulation study journal, July 2009

Enzyme Activity below the Dynamical Transition at 220 K journal, November 1998

Derivation of Mean-Square Displacements for Protein Dynamics from Elastic Incoherent Neutron Scattering journal, April 2012

Thermal Motions in Bacteriorhodopsin at Different Hydration Levels Studied by Neutron Scattering: Correlation with Kinetics and Light-Induced Conformational Changes journal, October 1998

Dynamical transition of myoglobin revealed by inelastic neutron scattering journal, February 1989

A smooth particle mesh Ewald method journal, November 1995

Temperature Dependence of Protein Dynamics: Computer Simulation Analysis of Neutron Scattering Properties journal, March 2002

Dynamics of tRNA at Different Levels of Hydration journal, April 2009

Onsets of Anharmonicity in Protein Dynamics journal, July 2005

The Dynamics of Protein Hydration Water: A Quantitative Comparison of Molecular Dynamics Simulations and Neutron-scattering Experiments journal, December 2000

A benchmark for protein dynamics: Ribonuclease A measured by neutron scattering in a large wavevector-energy transfer range journal, April 2008

Long-time mean-square displacements in proteins journal, November 2013

Protein Dynamics and Stability: The Distribution of Atomic Fluctuations in Thermophilic and Mesophilic Dihydrofolate Reductase Derived Using Elastic Incoherent Neutron Scattering
journal, June 2008

Intrinsic mean-square displacements in proteins
journal, July 2012

The structures of the monoclinic and orthorhombic forms of hen egg-white lysozyme at 6 Å resolution
journal, March 1982

Dynamics of heparan sulfate explored by neutron scattering
journal, January 2010

Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation
journal, April 2007

Energy resolution and dynamical heterogeneity effects on elastic incoherent neutron scattering from molecular systems
journal, February 2003

LINCS: A linear constraint solver for molecular simulations
journal, September 1997

Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering
journal, August 1990

Protein Flexibility from the Dynamical Transition:A Force Constant Analysis
journal, March 2001

Effect of conformational states on protein dynamical transition
journal, January 2010

Impact of anisotropic atomic motions in proteins on powder-averaged incoherent neutron scattering intensities
journal, December 2012

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
journal, February 2008

Effect of the Environment on the Protein Dynamical Transition: A Neutron Scattering Study
journal, August 2002

Motional heterogeneity in human acetylcholinesterase revealed by a non-Gaussian model for elastic incoherent neutron scattering
journal, October 2013

Relaxation dynamics of lysozyme in solution under pressure: Combining molecular dynamics simulations and quasielastic neutron scattering
journal, April 2008

Incoherent neutron scattering functions for diffusion inside two concentric spheres
journal, July 2000

Logarithmic Decay in Single-Particle Relaxation of Hydrated Lysozyme Powder
journal, September 2009

Quasielastic neutron scattering in soft matter
journal, December 2009

Enzyme Dynamics and Activity: Time-Scale Dependence of Dynamical Transitions in Glutamate Dehydrogenase Solution
journal, October 1999

Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations
journal, December 2006

Polymorphic transitions in single crystals: A new molecular dynamics method
journal, December 1981

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
journal, March 1988

Influence of Hydration on the Dynamics of Lysozyme
journal, October 2006

Influence of pressure on the slow and fast fractional relaxation dynamics in lysozyme: A simulation study
journal, February 2008

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew
journal, May 2004

How Soft Is a Protein? A Protein Dynamics Force Constant Measured by Neutron Scattering
journal, June 2000

Canonical dynamics: Equilibrium phase-space distributions
journal, March 1985

Dynamics of a globular protein and its hydration water studied by neutron scattering and MD simulations
journal, January 2010

Quantitative model for the heterogeneity of atomic position fluctuations in proteins: A simulation study
journal, July 2009

Enzyme Activity below the Dynamical Transition at 220 K
journal, November 1998

Derivation of Mean-Square Displacements for Protein Dynamics from Elastic Incoherent Neutron Scattering
journal, April 2012

Thermal Motions in Bacteriorhodopsin at Different Hydration Levels Studied by Neutron Scattering: Correlation with Kinetics and Light-Induced Conformational Changes
journal, October 1998

Dynamical transition of myoglobin revealed by inelastic neutron scattering
journal, February 1989

A smooth particle mesh Ewald method
journal, November 1995

Temperature Dependence of Protein Dynamics: Computer Simulation Analysis of Neutron Scattering Properties
journal, March 2002

Dynamics of tRNA at Different Levels of Hydration
journal, April 2009

Onsets of Anharmonicity in Protein Dynamics
journal, July 2005

The Dynamics of Protein Hydration Water: A Quantitative Comparison of Molecular Dynamics Simulations and Neutron-scattering Experiments
journal, December 2000

A benchmark for protein dynamics: Ribonuclease A measured by neutron scattering in a large wavevector-energy transfer range
journal, April 2008

Long-time mean-square displacements in proteins
journal, November 2013