Structural Characterization of CO-Inhibited Mo-Nitrogenase by Combined Application of Nuclear Resonance Vibrational Spectroscopy, Extended X-ray Absorption Fine Structure, and Density Functional Theory: New Insights into the Effects of CO Binding and the Role of the Interstitial Atom
Abstract
The properties of CO-inhibited Azotobacter vinelandii (Av) Mo-nitrogenase (N2ase) have been examined by the combined application of nuclear resonance vibrational spectroscopy (NRVS), extended X-ray absorption fine structure (EXAFS), and density functional theory (DFT). Dramatic changes in the NRVS are seen under high-CO conditions, especially in a 188 cm–1 mode associated with symmetric breathing of the central cage of the FeMo-cofactor. Similar changes are reproduced with the α-H195Q N2ase variant. In the frequency region above 450 cm–1, additional features are seen that are assigned to Fe-CO bending and stretching modes (confirmed by 13CO isotope shifts). The EXAFS for wild-type N2ase shows evidence for a significant cluster distortion under high-CO conditions, most dramatically in the splitting of the interaction between Mo and the shell of Fe atoms originally at 5.08 Å in the resting enzyme. A DFT model with both a terminal ₋CO and a partially reduced ₋CHO ligand bound to adjacent Fe sites is consistent with both earlier FT-IR experiments, and the present EXAFS and NRVS observations for the wild-type enzyme. Another DFT model with two terminal CO ligands on the adjacent Fe atoms yields Fe-CO bands consistent with the α-H195Q variant NRVS. The calculations also shed light on the vibrationalmore »
- Authors:
-
- Department of Chemistry, University of California, Davis, California 95616, United States
- Institut für Chemie, Technische Universität Berlin, 10623 Berlin, Germany
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
- Department of Chemistry, University of California, Davis, California 95616, United States, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Biochemistry, Virginia Polytechnic Institute & State University, Blacksburg, Virginia 24061, United States
- Research and Utilization Division, SPring-8/JASRI, 1-1-1 Kouto, Sayo, Hyogo 679-5198, Japan
- SR Materials Science Instrumentation Unit, RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1163247
- Alternate Identifier(s):
- OSTI ID: 1257353
- Grant/Contract Number:
- CHE 1308384; GM-65440
- Resource Type:
- Published Article
- Journal Name:
- Journal of the American Chemical Society
- Additional Journal Information:
- Journal Name: Journal of the American Chemical Society Journal Volume: 136 Journal Issue: 45; Journal ID: ISSN 0002-7863
- Publisher:
- American Chemical Society
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND TECHNOLOGY
Citation Formats
Scott, Aubrey D., Pelmenschikov, Vladimir, Guo, Yisong, Yan, Lifen, Wang, Hongxin, George, Simon J., Dapper, Christie H., Newton, William E., Yoda, Yoshitaka, Tanaka, Yoshihito, and Cramer, Stephen P. Structural Characterization of CO-Inhibited Mo-Nitrogenase by Combined Application of Nuclear Resonance Vibrational Spectroscopy, Extended X-ray Absorption Fine Structure, and Density Functional Theory: New Insights into the Effects of CO Binding and the Role of the Interstitial Atom. United States: N. p., 2014.
Web. doi:10.1021/ja505720m.
Scott, Aubrey D., Pelmenschikov, Vladimir, Guo, Yisong, Yan, Lifen, Wang, Hongxin, George, Simon J., Dapper, Christie H., Newton, William E., Yoda, Yoshitaka, Tanaka, Yoshihito, & Cramer, Stephen P. Structural Characterization of CO-Inhibited Mo-Nitrogenase by Combined Application of Nuclear Resonance Vibrational Spectroscopy, Extended X-ray Absorption Fine Structure, and Density Functional Theory: New Insights into the Effects of CO Binding and the Role of the Interstitial Atom. United States. https://doi.org/10.1021/ja505720m
Scott, Aubrey D., Pelmenschikov, Vladimir, Guo, Yisong, Yan, Lifen, Wang, Hongxin, George, Simon J., Dapper, Christie H., Newton, William E., Yoda, Yoshitaka, Tanaka, Yoshihito, and Cramer, Stephen P. Mon .
"Structural Characterization of CO-Inhibited Mo-Nitrogenase by Combined Application of Nuclear Resonance Vibrational Spectroscopy, Extended X-ray Absorption Fine Structure, and Density Functional Theory: New Insights into the Effects of CO Binding and the Role of the Interstitial Atom". United States. https://doi.org/10.1021/ja505720m.
@article{osti_1163247,
title = {Structural Characterization of CO-Inhibited Mo-Nitrogenase by Combined Application of Nuclear Resonance Vibrational Spectroscopy, Extended X-ray Absorption Fine Structure, and Density Functional Theory: New Insights into the Effects of CO Binding and the Role of the Interstitial Atom},
author = {Scott, Aubrey D. and Pelmenschikov, Vladimir and Guo, Yisong and Yan, Lifen and Wang, Hongxin and George, Simon J. and Dapper, Christie H. and Newton, William E. and Yoda, Yoshitaka and Tanaka, Yoshihito and Cramer, Stephen P.},
abstractNote = {The properties of CO-inhibited Azotobacter vinelandii (Av) Mo-nitrogenase (N2ase) have been examined by the combined application of nuclear resonance vibrational spectroscopy (NRVS), extended X-ray absorption fine structure (EXAFS), and density functional theory (DFT). Dramatic changes in the NRVS are seen under high-CO conditions, especially in a 188 cm–1 mode associated with symmetric breathing of the central cage of the FeMo-cofactor. Similar changes are reproduced with the α-H195Q N2ase variant. In the frequency region above 450 cm–1, additional features are seen that are assigned to Fe-CO bending and stretching modes (confirmed by 13CO isotope shifts). The EXAFS for wild-type N2ase shows evidence for a significant cluster distortion under high-CO conditions, most dramatically in the splitting of the interaction between Mo and the shell of Fe atoms originally at 5.08 Å in the resting enzyme. A DFT model with both a terminal ₋CO and a partially reduced ₋CHO ligand bound to adjacent Fe sites is consistent with both earlier FT-IR experiments, and the present EXAFS and NRVS observations for the wild-type enzyme. Another DFT model with two terminal CO ligands on the adjacent Fe atoms yields Fe-CO bands consistent with the α-H195Q variant NRVS. The calculations also shed light on the vibrational “shake” modes of the interstitial atom inside the central cage, and their interaction with the Fe-CO modes. We discuss implications for the CO and N2 reactivity of N2ase.},
doi = {10.1021/ja505720m},
journal = {Journal of the American Chemical Society},
number = 45,
volume = 136,
place = {United States},
year = {Mon Nov 03 00:00:00 EST 2014},
month = {Mon Nov 03 00:00:00 EST 2014}
}
https://doi.org/10.1021/ja505720m
Web of Science
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