DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability

Authors:
 [1];  [2];  [3];  [2];  [1]
  1. Department of Biochemistry, University of Alberta, Edmonton, Alberta T6G 2H7, Canada
  2. Midwest Center for Structural Genomics and Structural Biology Center, Biosciences, Argonne National Laboratory, Argonne, Illinois 60439, United States
  3. Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
Publication Date:
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1154673
Grant/Contract Number:  
AC02-06CH11357
Resource Type:
Published Article
Journal Name:
Biochemistry
Additional Journal Information:
Journal Name: Biochemistry Journal Volume: 53 Journal Issue: 36; Journal ID: ISSN 0006-2960
Publisher:
American Chemical Society
Country of Publication:
United States
Language:
English

Citation Formats

Lu, Jun, Wu, Ruiying, Adkins, Joshua N., Joachimiak, Andrzej, and Glover, J. N. Mark. Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability. United States: N. p., 2014. Web. doi:10.1021/bi500244m.
Lu, Jun, Wu, Ruiying, Adkins, Joshua N., Joachimiak, Andrzej, & Glover, J. N. Mark. Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability. United States. https://doi.org/10.1021/bi500244m
Lu, Jun, Wu, Ruiying, Adkins, Joshua N., Joachimiak, Andrzej, and Glover, J. N. Mark. Tue . "Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability". United States. https://doi.org/10.1021/bi500244m.
@article{osti_1154673,
title = {Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability},
author = {Lu, Jun and Wu, Ruiying and Adkins, Joshua N. and Joachimiak, Andrzej and Glover, J. N. Mark},
abstractNote = {},
doi = {10.1021/bi500244m},
journal = {Biochemistry},
number = 36,
volume = 53,
place = {United States},
year = {Tue Sep 02 00:00:00 EDT 2014},
month = {Tue Sep 02 00:00:00 EDT 2014}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1021/bi500244m

Citation Metrics:
Cited by: 6 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Site-directed mutagenesis by overlap extension using the polymerase chain reaction
journal, April 1989


A Family of LIC Vectors for High-Throughput Cloning and Purification of Proteins
book, January 2009


A PAS domain within F plasmid TraJ is critical for its function as a transcriptional activator
journal, August 2011

  • Arutyunov, D.; Rodriguez-Maillard, J. M.; Frost, L. S.
  • Biochemistry and Cell Biology, Vol. 89, Issue 4
  • DOI: 10.1139/o11-028

A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes.
journal, February 1985

  • Tabor, S.; Richardson, C. C.
  • Proceedings of the National Academy of Sciences, Vol. 82, Issue 4
  • DOI: 10.1073/pnas.82.4.1074

New tools for structure refinement in PHENIX
journal, August 2010

  • Adams, Paul; Afonine, Pavel; Echols, Nat
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 66, Issue a1
  • DOI: 10.1107/S010876731009968X

Activation of the Cpx regulon destabilizes the F plasmid transfer activator, TraJ, via the HslVU protease in Escherichia coli
journal, February 2008


Automated structure solution, density modification and model building for MAD, SAD and MIR
journal, August 2002

  • Terwilliger, T.
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 58, Issue s1
  • DOI: 10.1107/S0108767302087378

PAS Domains: Internal Sensors of Oxygen, Redox Potential, and Light
journal, June 1999


Ligand-Binding PAS Domains in a Genomic, Cellular, and Structural Context
journal, October 2011


Studies on transformation of Escherichia coli with plasmids
journal, June 1983


A short history of SHELX
journal, December 2007

  • Sheldrick, George M.
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 64, Issue 1, p. 112-122
  • DOI: 10.1107/S0108767307043930

Structure of a biological oxygen sensor: A new mechanism for heme-driven signal transduction
journal, December 1998

  • Gong, W.; Hao, B.; Mansy, S. S.
  • Proceedings of the National Academy of Sciences, Vol. 95, Issue 26
  • DOI: 10.1073/pnas.95.26.15177

The crystal structure of Tm 5 Re 2 O 12
journal, December 1999

  • Ehrenberg, H.; Hartmann, T.; Wltschek, G.
  • Acta Crystallographica Section B Structural Science, Vol. 55, Issue 6
  • DOI: 10.1107/S0108768199005194

GroEL Plays a Central Role in Stress-Induced Negative Regulation of Bacterial Conjugation by Promoting Proteolytic Degradation of the Activator Protein TraJ
journal, August 2007

  • Zahrl, Doris; Wagner, Andrea; Tscherner, Michael
  • Journal of Bacteriology, Vol. 189, Issue 16
  • DOI: 10.1128/JB.00005-07

Ligation-independent cloning of PCR products (LIC-PCR)
journal, January 1990

  • Aslanidis, Charalampos; de Jong, Pieter J.
  • Nucleic Acids Research, Vol. 18, Issue 20
  • DOI: 10.1093/nar/18.20.6069

Spherically averaged phased translation function and its applications to search of molecules and fragments in the macromolecular electron density maps
journal, August 2000

  • Vagin, A.; Isupov, M.
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 56, Issue s1
  • DOI: 10.1107/S0108767300029081

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants the Keio collection
journal, February 2006

  • Baba, Tomoya; Ara, Takeshi; Hasegawa, Miki
  • Molecular Systems Biology, Vol. 2, Article No. 2006.0008
  • DOI: 10.1038/msb4100050

The Positive Regulator, TraJ, of the Escherichia coli F Plasmid Is Unstable in a cpxA * Background
journal, October 2002


Fertility repression of F-like conjugative plasmids: Physical mapping of the R6-5 finO and finP cistrons and identification of the finO protein
journal, December 1978

  • Timmis, K. N.; Andres, I.; Achtman, M.
  • Proceedings of the National Academy of Sciences, Vol. 75, Issue 12
  • DOI: 10.1073/pnas.75.12.5836

Error-Prone PCR Mutagenesis Reveals Functional Domains of a Bacterial Transcriptional Activator, TraJ
journal, July 2012

  • Lu, Jun; Peng, Yun; Arutyunov, Denis
  • Journal of Bacteriology, Vol. 194, Issue 14
  • DOI: 10.1128/JB.00312-12

Structure and Signaling Mechanism of Per-ARNT-Sim Domains
journal, October 2009


Construction of vectors with the pl5a replicon, kanamycin resistance, inducible lacZ α and pUC18 or pUC19 multiple cloning sites
journal, January 1990

  • Jobling, Michael G.; Holmes, Randall K.
  • Nucleic Acids Research, Vol. 18, Issue 17
  • DOI: 10.1093/nar/18.17.5315

High-throughput protein purification and quality assessment for crystallization
journal, September 2011


Hfq Is a Regulator of F-Plasmid TraJ and TraM Synthesis in Escherichia coli
journal, January 2006


Genetic mapping of regulator gene phoS for alkaline phosphatase in Escherichia coli
journal, March 1968


The interpretation of protein structures: Estimation of static accessibility
journal, February 1971


Crystal Structure and Interactions of the PAS Repeat Region of the Drosophila Clock Protein PERIOD
journal, January 2005


A New Vector for High-Throughput, Ligation-Independent Cloning Encoding a Tobacco Etch Virus Protease Cleavage Site
journal, June 2002

  • Stols, Lucy; Gu, Minyi; Dieckman, Lynda
  • Protein Expression and Purification, Vol. 25, Issue 1
  • DOI: 10.1006/prep.2001.1603

DNA Processing Reactions in Bacterial Conjugation
journal, June 1995


Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
journal, June 2008

  • Langer, Gerrit; Cohen, Serge X.; Lamzin, Victor S.
  • Nature Protocols, Vol. 3, Issue 7
  • DOI: 10.1038/nprot.2008.91

Preparation of selenomethionyl proteins for phase determination
book, January 1997


The F plasmid transfer activator TraJ is a dimeric helix-turn-helix DNA-binding protein: F TraJ binds DNA in vivo
journal, August 2010


Mammalian Per-Arnt-Sim Proteins in Environmental Adaptation
journal, March 2010


CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
journal, July 2006

  • Dundas, J.; Ouyang, Z.; Tseng, J.
  • Nucleic Acids Research, Vol. 34, Issue Web Server
  • DOI: 10.1093/nar/gkl282

Automation of protein purification for structural genomics
journal, March 2004


Analysis of the sequence and gene products of the transfer region of the F sex factor.
journal, January 1994


Silencing and activating type IV secretion genes of the F-like conjugative resistance plasmid R1
journal, December 2013

  • Wagner, Maria Anna; Bischof, Karin; Kati, Dominiki
  • Microbiology, Vol. 159, Issue Pt_12
  • DOI: 10.1099/mic.0.071738-0

[20] Processing of X-ray diffraction data collected in oscillation mode
book, January 1997


The Cyclic AMP-Cyclic AMP Receptor Protein Complex Regulates Activity of the traJ Promoter of the Escherichia coli Conjugative Plasmid pRK100
journal, March 2003


The role of H-NS in silencing F transfer gene expression during entry into stationary phase: H-NS represses F traM and traJ
journal, September 2004


FinO is an RNA chaperone that facilitates sense-antisense RNA interactions
journal, December 2003


Regulation of the F plasmid tra Y promoter in Escherichia coli by host and plasmid factors
journal, March 1991

  • Silverman, Philip M.; Wickersham, Elizabeth; Harris, Robin
  • Journal of Molecular Biology, Vol. 218, Issue 1
  • DOI: 10.1016/0022-2836(91)90878-A