The RAPS (Rajasthan Atomic Power Station) unit-1 is now operating at reduced power due to the removal of fifteen fuel channels for repair of south end shield cracks. The power level is restricted to 50% of the full power capacity as a precautionary measure. The relative difference that operation at 50% power and higher power would make to the end shield structure is being currently analysed with a view to operate this reactor at higher power levels. As a prerequisite, a detailed thermal hydraulic analysis is essential to assess the effect of reactor operation with isolated channels on the primary heat transport (PHT) system pressure, flow, temperature. The adequacy of the existing trip set points for the plant operation under this mode is also required to be assessed. In the present study, analysis of the PHT system has been carried out to determine the flow and pressure profiles for the RAPS heat transport system for operation of the reactor with isolated channels. (author). 5 refs., 1 fig., 1 tab.