Visualization of information with an established order

Wong, Pak Chung; Foote, Harlan P; Thomas, James J; Wong, Kwong-Kwok

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A - human necessities
A01 - agriculture
A21 - baking
A22 - butchering
A23 - foods or foodstuffs
A24 - tobacco
A41 - wearing apparel
A42 - headwear
A43 - footwear
A44 - haberdashery
A45 - hand or travelling articles
A46 - brushware
A47 - furniture
A61 - medical or veterinary science
A62 - life-saving
A63 - sports
A99 - subject matter not otherwise provided for in this section
B - performing operations
B01 - physical or chemical processes or apparatus in general
B02 - crushing, pulverising, or disintegrating
B03 - separation of solid materials using liquids or using pneumatic tables or jigs
B04 - centrifugal apparatus or machines for carrying-out physical or chemical processes
B05 - spraying or atomising in general
B06 - generating or transmitting mechanical vibrations in general
B07 - separating solids from solids
B08 - cleaning
B09 - disposal of solid waste
B21 - mechanical metal-working without essentially removing material
B22 - casting
B23 - machine tools
B24 - grinding
B25 - hand tools
B26 - hand cutting tools
B27 - working or preserving wood or similar material
B28 - working cement, clay, or stone
B29 - working of plastics
B30 - presses
B31 - making articles of paper, cardboard or material worked in a manner analogous to paper
B32 - layered products
B33 - additive manufacturing technology
B41 - printing
B42 - bookbinding
B43 - writing or drawing implements
B44 - decorative arts
B60 - vehicles in general
B61 - railways
B62 - land vehicles for travelling otherwise than on rails
B63 - ships or other waterborne vessels
B64 - aircraft
B65 - conveying
B66 - hoisting
B67 - opening, closing {or cleaning} bottles, jars or similar containers
B68 - saddlery
B81 - microstructural technology
B82 - nanotechnology
B99 - subject matter not otherwise provided for in this section
C - chemistry
C01 - inorganic chemistry
C02 - treatment of water, waste water, sewage, or sludge
C03 - glass
C04 - cements
C05 - fertilisers
C06 - explosives
C07 - organic chemistry
C08 - organic macromolecular compounds
C09 - dyes
C10 - petroleum, gas or coke industries
C11 - animal or vegetable oils, fats, fatty substances or waxes
C12 - biochemistry
C13 - sugar industry
C14 - skins
C21 - metallurgy of iron
C22 - metallurgy
C23 - coating metallic material
C25 - electrolytic or electrophoretic processes
C30 - crystal growth
C40 - combinatorial technology
C99 - subject matter not otherwise provided for in this section
D - textiles
D01 - natural or man-made threads or fibres
D02 - yarns
D03 - weaving
D04 - braiding
D05 - sewing
D06 - treatment of textiles or the like
D07 - ropes
D10 - indexing scheme associated with sublasses of section d, relating to textiles
D21 - paper-making
D99 - subject matter not otherwise provided for in this section
E - fixed constructions
E01 - construction of roads, railways, or bridges
E02 - hydraulic engineering
E03 - water supply
E04 - building
E05 - locks
E06 - doors, windows, shutters, or roller blinds in general
E21 - earth drilling
E99 - subject matter not otherwise provided for in this section
F - mechanical engineering
F01 - machines or engines in general
F02 - combustion engines
F03 - machines or engines for liquids
F04 - positive - displacement machines for liquids
F05 - indexing schemes relating to engines or pumps in various subclasses of classes f01-f04
F15 - fluid-pressure actuators
F16 - engineering elements and units
F17 - storing or distributing gases or liquids
F21 - lighting
F22 - steam generation
F23 - combustion apparatus
F24 - heating
F25 - refrigeration or cooling
F26 - drying
F27 - furnaces
F28 - heat exchange in general
F41 - weapons
F42 - ammunition
F99 - subject matter not otherwise provided for in this section
G - physics
G01 - measuring
G02 - optics
G03 - photography
G04 - horology
G05 - controlling
G06 - computing
G07 - checking-devices
G08 - signalling
G09 - education
G10 - musical instruments
G11 - information storage
G12 - instrument details
G16 - information and communication technology [ict] specially adapted for specific application fields
G21 - nuclear physics
G99 - subject matter not otherwise provided for in this section
H - electricity
H01 - basic electric elements
H02 - generation
H03 - basic electronic circuitry
H04 - electric communication technique
H05 - electric techniques not otherwise provided for
H99 - subject matter not otherwise provided for in this section
Y - new / cross sectional technologies
Y02 - technologies or applications for mitigation or adaptation against climate change
Y04 - information or communication technologies having an impact on other technology areas
Y10 - technical subjects covered by former uspc

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Title: Visualization of information with an established order

Abstract

Among the embodiments of the present invention is a system including one or more processors operable to access data representative of a biopolymer sequence of monomer units. The one or more processors are further operable to establish a pattern corresponding to at least one fractal curve and generate one or more output signals corresponding to a number of image elements each representative of one of the monomer units. Also included is a display device responsive to the one or more output signals to visualize the biopolymer sequence by displaying the image elements in accordance with the pattern.

Inventors:

Wong, Pak Chung ^[1]; Foote, Harlan P ^[2]; Thomas, James J ^[1]; Wong, Kwong-Kwok ^[3]

Richland, WA
Richmond, WA
Sugar Land, TX

Issue Date:: Tue Feb 13 00:00:00 EST 2007

Research Org.:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Org.:: USDOE

OSTI Identifier:: 902762

Patent Number(s):: 7177452

Assignee:: Battelle Memorial Institute (Richland, WA)

Patent Classifications (CPCs):: G - PHYSICS G16 - INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS G16B - BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY

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G - PHYSICS G16 - INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS G16B - BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
G16B30/00 - ICT specially adapted for sequence analysis involving nucleotides or amino acids
G16B30/10 - Sequence alignment
G16B45/00 - ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

Show less

DOE Contract Number:: AC06-76RL01830

Resource Type:: Patent

Country of Publication:: United States

Language:: English

Subject:: 97 MATHEMATICS AND COMPUTING

Citation Formats


                    Wong, Pak Chung, Foote, Harlan P, Thomas, James J, and Wong, Kwong-Kwok. Visualization of information with an established order.  United States: N. p., 2007. 
        Web.

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                    Wong, Pak Chung, Foote, Harlan P, Thomas, James J, & Wong, Kwong-Kwok. Visualization of information with an established order.  United States.

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                    Wong, Pak Chung, Foote, Harlan P, Thomas, James J, and Wong, Kwong-Kwok. Tue .  
        "Visualization of information with an established order".  United States.  https://www.osti.gov/servlets/purl/902762.

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@article{osti_902762,

  title        = {Visualization of information with an established order},

  author       = {Wong, Pak Chung and Foote, Harlan P and Thomas, James J and Wong, Kwong-Kwok},

  abstractNote = {Among the embodiments of the present invention is a system including one or more processors operable to access data representative of a biopolymer sequence of monomer units. The one or more processors are further operable to establish a pattern corresponding to at least one fractal curve and generate one or more output signals corresponding to a number of image elements each representative of one of the monomer units. Also included is a display device responsive to the one or more output signals to visualize the biopolymer sequence by displaying the image elements in accordance with the pattern.},

  doi          = {},

  journal      = {},
number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Feb 13 00:00:00 EST 2007},

  month        = {Tue Feb 13 00:00:00 EST 2007}

}

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Similar Records

Title: Visualization of information with an established order

Abstract

Citation Formats

Basic local alignment search tool journal, October 1990

Space-Filling Curves and a Measure of Coherence book, January 1991

Chaos and Fractals book, January 1992

The Information Mural: a technique for displaying and navigating large information spaces journal, January 1998

Supporting detail-in-context for the DNA representation, H-curves conference, January 1998

Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA journal, June 2000

Spatial representation of symbolic sequences through iterative function systems journal, July 1999

Alternative Algorithm for Hilbert's Space-Filling Curve journal, April 1971

PipMaker---A Web Server for Aligning Two Genomic DNA Sequences journal, April 2000

Information visualization and visual data mining journal, January 2002

Alignment of whole genomes journal, January 1999

GENVIS: a sequence visualization technique for genomic DNA conference, March 1996

Fractal properties of DNA walks journal, January 1999

Computer visualization of long genomic sequences conference, January 1993

Fractals from genomes – exact solutions of a biology-inspired problem journal, July 2000

Visualization of biological sequence similarity search results conference, January 1995

Designing pixel-oriented visualization techniques: theory and applications journal, January 2000

Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis journal, October 1998

Flexible information visualization of multivariate data from biological sequence similarity searches conference, January 1996

Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491 journal, March 2000

The Diagram, a Method for Comparing Sequences. Its Use with Amino Acid and Nucleotide Sequences journal, September 1970

Chaos game representation of gene structure journal, January 1990

Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori journal, January 1999

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39 journal, March 2000

Integrated graphical analysis of protein sequence features predicted from sequence composition journal, January 2001

Comparison of methods for searching protein sequence databases: Optimal protein database searches journal, June 1995

Visualizing the Genome book, January 1997

Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58 journal, March 2000

The complete genome sequence of the gastric pathogen Helicobacter pylori journal, August 1997

Visual feedback in querying large databases conference, January 1993

Fractals related to long DNA sequences and complete genomes journal, May 2000

Global visualization and alignments of whole bacterial genomes journal, July 2003

Web-based visualization tools for bacterial genome alignments journal, September 2000

Comparative genomes of Chlamydia pneumoniae and C. trachomatis journal, April 1999

A convenient and adaptable package of computer programs for DNA and protein sequence management, analysis and homology determination journal, January 1984

Analysis of the clustering properties of the Hilbert space-filling curve journal, January 2001

Basic local alignment search tool
journal, October 1990

Space-Filling Curves and a Measure of Coherence
book, January 1991

Chaos and Fractals
book, January 1992

The Information Mural: a technique for displaying and navigating large information spaces
journal, January 1998

Supporting detail-in-context for the DNA representation, H-curves
conference, January 1998

Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA
journal, June 2000

Spatial representation of symbolic sequences through iterative function systems
journal, July 1999

Alternative Algorithm for Hilbert's Space-Filling Curve
journal, April 1971

PipMaker---A Web Server for Aligning Two Genomic DNA Sequences
journal, April 2000

Information visualization and visual data mining
journal, January 2002

Alignment of whole genomes
journal, January 1999

GENVIS: a sequence visualization technique for genomic DNA
conference, March 1996

Fractal properties of DNA walks
journal, January 1999

Computer visualization of long genomic sequences
conference, January 1993

Fractals from genomes – exact solutions of a biology-inspired problem
journal, July 2000

Visualization of biological sequence similarity search results
conference, January 1995

Designing pixel-oriented visualization techniques: theory and applications
journal, January 2000

Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis
journal, October 1998

Flexible information visualization of multivariate data from biological sequence similarity searches
conference, January 1996

Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491
journal, March 2000

The Diagram, a Method for Comparing Sequences. Its Use with Amino Acid and Nucleotide Sequences
journal, September 1970

Chaos game representation of gene structure
journal, January 1990

Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
journal, January 1999

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
journal, March 2000

Integrated graphical analysis of protein sequence features predicted from sequence composition
journal, January 2001

Comparison of methods for searching protein sequence databases: Optimal protein database searches
journal, June 1995

Visualizing the Genome
book, January 1997

Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58
journal, March 2000

The complete genome sequence of the gastric pathogen Helicobacter pylori
journal, August 1997

Visual feedback in querying large databases
conference, January 1993

Fractals related to long DNA sequences and complete genomes
journal, May 2000

Global visualization and alignments of whole bacterial genomes
journal, July 2003

Web-based visualization tools for bacterial genome alignments
journal, September 2000

Comparative genomes of Chlamydia pneumoniae and C. trachomatis
journal, April 1999

A convenient and adaptable package of computer programs for DNA and protein sequence management, analysis and homology determination
journal, January 1984

Analysis of the clustering properties of the Hilbert space-filling curve
journal, January 2001