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Title: Type II restriction modification system methylation subunit of Alicyclobacillus acidocaldarius

Abstract

Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius are provided. Further provided are methods for modulating or altering recombination inside or outside of a cell using isolated and/or purified polypeptides and/or nucleic acid sequences from Alicyclobacillus acidocaldarius.

Inventors:
; ; ; ; ; ; ;
Issue Date:
Research Org.:
Idaho National Laboratory (INL), Idaho Falls, ID (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1420779
Patent Number(s):
9890385
Application Number:
15/395,184
Assignee:
Battelle Energy Alliance, LLC (Idaho Falls, ID)
Patent Classifications (CPCs):
C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
DOE Contract Number:  
AC07-99ID13727; AC07-05ID14517
Resource Type:
Patent
Resource Relation:
Patent File Date: 2016 Dec 30
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Lee, Brady D., Newby, Deborah T., Lacey, Jeffrey A., Thompson, David N., Thompson, Vicki S., Apel, William A., Roberto, Francisco F., and Reed, David W. Type II restriction modification system methylation subunit of Alicyclobacillus acidocaldarius. United States: N. p., 2018. Web.
Lee, Brady D., Newby, Deborah T., Lacey, Jeffrey A., Thompson, David N., Thompson, Vicki S., Apel, William A., Roberto, Francisco F., & Reed, David W. Type II restriction modification system methylation subunit of Alicyclobacillus acidocaldarius. United States.
Lee, Brady D., Newby, Deborah T., Lacey, Jeffrey A., Thompson, David N., Thompson, Vicki S., Apel, William A., Roberto, Francisco F., and Reed, David W. Tue . "Type II restriction modification system methylation subunit of Alicyclobacillus acidocaldarius". United States. https://www.osti.gov/servlets/purl/1420779.
@article{osti_1420779,
title = {Type II restriction modification system methylation subunit of Alicyclobacillus acidocaldarius},
author = {Lee, Brady D. and Newby, Deborah T. and Lacey, Jeffrey A. and Thompson, David N. and Thompson, Vicki S. and Apel, William A. and Roberto, Francisco F. and Reed, David W.},
abstractNote = {Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius are provided. Further provided are methods for modulating or altering recombination inside or outside of a cell using isolated and/or purified polypeptides and/or nucleic acid sequences from Alicyclobacillus acidocaldarius.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Tue Feb 13 00:00:00 EST 2018},
month = {Tue Feb 13 00:00:00 EST 2018}
}

Works referenced in this record:

The first description of an archaeal hemicellulase: the xylanase from Thermococcus zilligii strain AN1
journal, November 1999


The nature of lignocellulosics and their pretreatments for enzymatic hydrolysis
book, January 1982


PCR ligation mutagenesis in transformable streptococci: application and efficiency
journal, April 2002


Glycosyl hydrolases from hyperthermophiles
journal, February 1997


Synthesis of oligosaccharides, glycolipds, and glycoproteins using bacterial glycosyltransferases
patent-application, June 2007


Conversion of a β-Ketoacyl Synthase to a Malonyl Decarboxylase by Replacement of the Active-Site Cysteine with Glutamine
journal, September 1999


Production of a cellulase-free xylanase from agricultural waste materials by a thermotolerant Streptomyces sp.
journal, October 2001


Glycosylation Engineering: Controlling personalities tame wild sugars on proteins and natural products
journal, September 2006


Microbial Pretreatment of Biomass: Potential for Reducing Severity of Thermochemical Biomass Pretreatment
journal, January 2003


Purification and Properties of Acid Stable Xylanases from Aspergillus kawachii
journal, January 1992


Hackney, F. L., et al. Chondrosarcoma of the jaws
journal, January 1992


Xylanases in bleaching: From an idea to the industry
journal, March 1994


Expression of microbial proteins in plants for production of plants with improved properties
patent-application, December 2003


Isolation and characterization of a new family 42 β-galactosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius: Identification of the active site residues
journal, February 2008



journal, October 2003


Strand displacement amplification—an isothermal, in vitro DNA amplification technique
journal, January 1992


Molecular and biotechnological aspects of xylanases
journal, July 1999


Polypeptides having haloperoxidase activity
patent, January 2003


Comparison of the economics of acid and enzymatic hydrolysis of newsprint
journal, April 1978


Baculovirus systems for the expression of human gene products
journal, October 1993


Thermophilic and thermoacidophilic glycosylation genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods
patent-application, October 2009


Characterization of a β-glycosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius
journal, April 2006


Crystal structure of non-allosteric L-lactate dehydrogenase from Lactobacillus pentosus at 2.3 Å resolution: Specific interactions at subunit interfaces
journal, December 2001

  • Uchikoba, Hiroyuki; Fushinobu, Shinya; Wakagi, Takayoshi
  • Proteins: Structure, Function, and Bioinformatics, Vol. 46, Issue 2, p. 206-214
  • https://doi.org/10.1002/prot.1165

Continuous cultures of fused cells secreting antibody of predefined specificity
journal, August 1975


Genetic disease detection and DNA amplification using cloned thermostable ligase.
journal, January 1991


Manufacture of Xylose-Based Fermentation Media from Corncobs by Posthydrolysis of Autohydrolysis Liquors
journal, January 2001


Thermostable xylanases
patent, July 2000


Biochemistry and genetics of microbial xylanases
journal, June 1996


Xylanase obtained from an anaerobic fungus
patent, September 1999


Analytical strategies for the use of DNA probes
journal, February 1988


Preliminary Investigation of Fungal Bioprocessing of Wheat Straw for Production of Straw-Thermoplastic Composites
book, January 2003


Biotransformation of Toxic Organic and Inorganic Contaminants by Halophilic Bacteria
book, January 2004


Cellulase-free xylanases from Bacillus and other microorganisms
journal, February 2000


Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods
patent, April 2011


Single molecule detection of RNA reporter probes by amplification with Qβ replicase
journal, August 1996


Functional reconstitution of a maltose ATP-binding cassette transporter from the thermoacidophilic gram-positive bacterium Alicyclobacillus acidocaldarius
journal, May 2004


Bacterial glycoproteins: Functions, biosynthesis and applications
journal, April 2003


Microbial process for producing L-ascorbic acid, D-erythorbic acid, and salts thereof
patent, August 2004


Overview and Evaluation of Fuel Ethanol from Cellulosic Biomass: Technology, Economics, the Environment, and Policy
journal, November 1996


Rapid production of thermostable cellulase-free xylanase by a strain of Bacillus subtilis and its properties
journal, June 2002


Microbial β-Glucosidases: Cloning, Properties, and Applications
journal, January 2002


Two Glyceraldehyde-3-phosphate Dehydrogenases with Opposite Physiological Roles in a Nonphotosynthetic Bacterium
journal, May 2000


Synthesis of an amplifiable reporter RNA for bioassays
journal, January 1986


Characterization of a new bacteriophage which infects bacteria of the genus Acidiphilium
journal, November 1993


Oxygen effects on thermophilic microbial populations in biofilters treating nitric oxide containing off-gas streams
journal, October 2001


Thermophilic and Thermoacidophilic Metabolism Genes and Enzymes From Alicyclobacillus Acidocaldarius and Related Organisms, Methods
patent-application, February 2016


Hydrolases, nucleic acids encoding them and methods for making and using them
patent, October 2012


The Synthesis of Bovine Insulin by the Solid Phase Method
journal, November 1966


Current applications of COS cell based transient expression systems
journal, October 1993


Cloning and transcriptional analysis of the Thermoanaerobacter ethanolicus strain 39E maltose ABC transport system
journal, March 2002


Quantitative Saccharification of Wood and Cellulose
journal, January 1945


Process for hydrolyzing starch without pH adjustment
patent-application, July 2003


Autocatalytic replication of a recombinant RNA
journal, December 1983


Lignocellulose biodegradation: Fundamentals and applications
journal, June 2002


Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design
journal, August 2005


Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability
journal, March 2001


Polymerase chain reaction
journal, November 1989


Transformation of Acidiphilium by electroporation and conjugation
journal, May 1992


An extremely thermostable xylanase from the thermophilic eubacterium Thermotoga
journal, July 1991


Alteration and modulation of protein activity by varying post-translational modification
patent-application, August 2010


Thermoacidophilic Microorganisms and their Novel Biocatalysts
journal, December 2004


Powers and Pitfalls in Sequence Analysis: The 70% Hurdle
journal, April 2000


Dilute-Sulfuric Acid Pretreatment of Corn Stover in Pilot-Scale Reactor: Investigation of Yields, Kinetics, and Enzymatic Digestibilities of Solids
journal, January 2003


Recent advances in heterologous gene expression in Escherichia coli
journal, October 1993


Dilute-Sulfuric Acid Pretreatment of Corn Stover in Pilot-Scale Reactor
book, January 2003


Pretreatment for enhanced hydrolysis of cellulosic biomass
journal, January 1984


Transcriptional control in alicyclobacillus acidocaldarius and associated genes, proteins, and methods
patent-application, August 2009


Xylanases, xylanase families and extremophilic xylanases
journal, January 2005


Measurement of fumonisins in corn with a fiber optic fluoroimmunosensor
conference, May 1997


T and R states in the crystals of bacterial L–lactate dehydrogenase reveal the mechanism for allosteric control
journal, March 1994


Purification and Characterization of a Novel Thermo-Alkali-Stable Catalase from Thermus brockianus
journal, January 2003


From genes to protein structure and function: novel applications of computational approaches in the genomic era
journal, January 2000


Improved tools for biological sequence comparison.
journal, April 1988


Tomato plants that exhibit resistance to botrytis cinerea
patent-application, December 2003


Dilute Acid Pretreatment, Enzymatic Saccharification, and Fermentation of Rice Hulls to Ethanol
journal, January 2005


Preliminary Investigation of Fungal Bioprocessing of Wheat Straw for Production of Straw-Thermoplastic Composites
journal, January 2003


Development of gas phase bioreactors for the removal of nitrogen oxides from synthetic flue gas streams
journal, October 2002


The Path Forward for Biofuels and Biomaterials
journal, January 2006


Products and processes for in vitro synthesis of biomolecules
patent-application, September 2006


Partial acid hydrolysis of cellulosic materials as a pretreatment for enzymatic hydrolysis
journal, July 1980


Microbial Cellulose Utilization: Fundamentals and Biotechnology
journal, September 2002


Ethanol from lignocellulosic biomass techno-economic performance in short-, middle- and long-term
journal, April 2005


‘Pseudomonas stutzeri’ strain and process for preparation of xylanase
patent, December 2004


Compositions and methods for the synthesis and subsequent modification of uridine-5'-diphosphosulfoquinovose (UDP-SQ)
patent-application, June 2007


Polypeptides of Alicyclobacillus sp.
patent-application, April 2007


Melamine Deaminase and Atrazine Chlorohydrolase: 98 Percent Identical but Functionally Different
journal, April 2001


Promoters and proteins from Clostridium thermocellum and uses thereof
patent-application, May 2006


Immunogenicity and protective efficacy of a tuberculosis DNA vaccine
journal, August 1996


Enzyme and methodology for the treatment of a biomass
patent, June 2010


Production and purification of a protein fused to a binding protein
patent, July 1997


Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Lipids
journal, November 1998


A general method applicable to the search for similarities in the amino acid sequence of two proteins
journal, March 1970


The Effect of Flow Rate of Compressed Hot Water on Xylan, Lignin, and Total Mass Removal from Corn Stover
journal, September 2003


Electrotransformation of Acidophilic, Heterotrophic, Gram-negative Bacteria
book, January 2000


Yeast systems for the expression of heterologous gene products
journal, October 1993


Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format.
journal, February 1989


Simultaneous saccharification and fermentation of cellulose: Effect of ethanol on enzymatic saccharification of cellulose
journal, April 1985


Comparison of pretreatment methods on the basis of available surface area
journal, January 1992


Lignochemicals
journal, February 1982


Thermostable xylanase
patent, June 1999


The acid hydrolysis of sugarcane bagasse hemicellulose to produce xylose, arabinose, glucose and other products
journal, November 2002


The Crystal And Molecular Structure Of Yeast L‐Lactate Dehydrogenase (Cytochrome b2): An Electron Microscopy Study by Negative Staining and Freeze-Etching Techniques
journal, July 1973


Bioengineering for Microbial Inulinases: Trends and Applications
journal, July 2017


A new class of biodegradable materials: Poly-3-hydroxy-butyrate/steam exploded straw fiber composites. I. Thermal and impact behavior
journal, September 1993


Biomechanical and Biochemical Pulping of Sugarcane Bagasse with Ceriporiopsis subvermispora Fungal and Xylanase Pretreatments
journal, March 2001


Molecular diversity of thermophilic cellulolytic and hemicellulolytic bacteria
journal, February 1999


Potential and utilization of thermophiles and thermostable enzymes in biorefining
journal, January 2007


Fungal Upgrading of Wheat Straw for Straw-Thermoplastics Production
journal, January 2004


Interlaboratory testing of methods for assay of xylanase activity
journal, May 1992


Glycosidases and glycosyl transferases in glycoside and oligosaccharide synthesis
journal, February 1998


Thermophilic and thermoacidophilic sugar transporter genes and enzymes from alicyclobacillus acidocaldarius and related organisms, methods
patent-application, October 2009


Microbial hemicellulases
journal, June 2003


Thermal and acid tolerant beta xylosidases, arabinofuranosidases, genes encoding, related organisms, and methods
patent-application, December 2010


Purification, Properties and Structural Aspects of a Thermoacidophilic alpha-Amylase from Alicyclobacillus Acidocaldarius Atcc 27009
journal, December 1994


Enzyme and methodology for the treatment of a biomass
patent-application, May 2007


Industrial Scale-Up of pH-Controlled Liquid Hot Water Pretreatment of Corn Fiber for Fuel Ethanol Production
journal, January 2005


Purification and characterization of an acidophilic xylanase from Aureobasidium pullulans var. melanigenum and sequence analysis of the encoding gene
journal, January 2001


A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemiluminescent and enzyme labeled synthetic oligodeoxyribonucleotide probes
journal, January 1988


Purification and Properties of Two Thermostable Alkaline Xylanases from an Alkaliphilic Bacillussp
journal, September 1998


Identification of essential genes in microorganisms
patent-application, February 2004


Deciphering the message in protein sequences: tolerance to amino acid substitutions
journal, March 1990


High temperature and alkaline stable catalase
patent-application, May 2005


Method of detecting and characterizing a nucleic acid or reactant for the application of this method
patent, April 1986


Xyloglucan-specific alkaline xyloglucanase from bacillus
patent, July 2001


Thermophilic Organisms For Conversion Of Lignocellulosic Biomass To Ethanol
patent-application, September 2009


Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods
patent-application, September 2009