Celluloytic enzymes, nucleic acids encoding them and methods for making and using them

Gray, Kevin A.; Zhao, Lishan; Cayouette, Michelle H.

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Title: Celluloytic enzymes, nucleic acids encoding them and methods for making and using them

Abstract

The invention is directed to polypeptides having any cellulolytic activity, e.g., a cellulase activity, e.g., endoglucanase, cellobiohydrolase, beta-glucosidase, xylanase, mannanse, .beta.-xylosidase, arabinofuranosidase, and/or oligomerase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts. The invention also provides compositions or products of manufacture comprising mixtures of enzymes comprising at least one enzyme of this invention.

Inventors:: Gray, Kevin A.; Zhao, Lishan; Cayouette, Michelle H.

Issue Date:: Tue Sep 08 00:00:00 EDT 2015

Research Org.:: BP Corporation North America Inc., Houston, TX (United States)

Sponsoring Org.:: USDOE

OSTI Identifier:: 1214148

Patent Number(s):: 9127263

Application Number:: 13/354,503

Assignee:: BP Corporation North America Inc. (Houston, TX)

Patent Classifications (CPCs):: A - HUMAN NECESSITIES A61 - MEDICAL OR VETERINARY SCIENCE A61P - SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS

C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES

Show more

A - HUMAN NECESSITIES A61 - MEDICAL OR VETERINARY SCIENCE A61P - SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
A61P43/00 - Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00

C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
C12N9/2402 - {hydrolysing O- and S- glycosyl compounds
C12N9/2405 - {Glucanases}
C12N9/2437 - {Cellulases
C12N9/248 - {Xylanases}

C - CHEMISTRY C12 - BIOCHEMISTRY C12Y - ENZYMES
C12Y302/01004 - Cellulase
C12Y302/01006 - Endo-1,3
C12Y302/01008 - Endo-1,4-beta-xylanase
C12Y302/01021 - Beta-glucosidase
C12Y302/01023 - Beta-galactosidase
C12Y302/01039 - Glucan endo-1,3-beta-D-glucosidase
C12Y302/01055 - Alpha-N-arabinofuranosidase
C12Y302/01091 - Cellulose 1,4-beta-cellobiosidase

Y - NEW / CROSS SECTIONAL TECHNOLOGIES Y02 - TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE Y02E - REDUCTION OF GREENHOUSE GAS [GHG] EMISSIONS, RELATED TO ENERGY GENERATION, TRANSMISSION OR DISTRIBUTION
Y02E50/10 - Biofuels

Y - NEW / CROSS SECTIONAL TECHNOLOGIES Y10 - TECHNICAL SUBJECTS COVERED BY FORMER USPC Y10T - TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
Y10T428/249921 - Web or sheet containing structurally defined element or component

Show less

DOE Contract Number:: FC36-03GO13146

Resource Type:: Patent

Resource Relation:: Patent File Date: 2012 Jan 20

Country of Publication:: United States

Language:: English

Citation Formats


                    Gray, Kevin A., Zhao, Lishan, and Cayouette, Michelle H. Celluloytic enzymes, nucleic acids encoding them and methods for making and using them.  United States: N. p., 2015. 
        Web.

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                    Gray, Kevin A., Zhao, Lishan, & Cayouette, Michelle H. Celluloytic enzymes, nucleic acids encoding them and methods for making and using them.  United States.

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                    Gray, Kevin A., Zhao, Lishan, and Cayouette, Michelle H. Tue .  
        "Celluloytic enzymes, nucleic acids encoding them and methods for making and using them".  United States.  https://www.osti.gov/servlets/purl/1214148.

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@article{osti_1214148,

  title        = {Celluloytic enzymes, nucleic acids encoding them and methods for making and using them},

  author       = {Gray, Kevin A. and Zhao, Lishan and Cayouette, Michelle H.},

  abstractNote = {The invention is directed to polypeptides having any cellulolytic activity, e.g., a cellulase activity, e.g., endoglucanase, cellobiohydrolase, beta-glucosidase, xylanase, mannanse, .beta.-xylosidase, arabinofuranosidase, and/or oligomerase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts. The invention also provides compositions or products of manufacture comprising mixtures of enzymes comprising at least one enzyme of this invention.},

  doi          = {},

  journal      = {},
number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Sep 08 00:00:00 EDT 2015},

  month        = {Tue Sep 08 00:00:00 EDT 2015}

}

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Celluloytic enzymes, nucleic acids encoding them and methods for making and using them

Patent Gray, Kevin A; Zhao, Lishan; Cayouette, Michelle H

The invention is directed to polypeptides having any cellulolytic activity, e.g., a cellulase activity, e.g., endoglucanase, cellobiohydrolase, beta-glucosidase, xylanase, mannanse, .beta.-xylosidase, arabinofuranosidase, and/or oligomerase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts. The invention also provides compositions or products of manufacture comprising mixtures of enzymes comprising at least one enzyme of this invention.
Full Text Available
Cellulolytic enzymes, nucleic acids encoding them and methods for making and using them

Patent Gray, Kevin A [San Diego, CA]; Zhao, Lishan [Emeryville, CA]; Cayouette, Michelle H [San Diego, CA]

The invention provides polypeptides having any cellulolytic activity, e.g., a cellulase activity, a endoglucanase, a cellobiohydrolase, a beta-glucosidase, a xylanase, a mannanse, a .beta.-xylosidase, an arabinofuranosidase, and/or an oligomerase activity, polynucleotides encoding these polypeptides, and methods of making and using these polynucleotides and polypeptides. In one aspect, the invention is directed to polypeptides having any cellulolytic activity, e.g., a cellulase activity, e.g., endoglucanase, cellobiohydrolase, beta-glucosidase, xylanase, mannanse, .beta.-xylosidase, arabinofuranosidase, and/or oligomerase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. In one aspect, the invention provides polypeptides having an oligomerasemore » « less
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Xylanases, nucleic acids encoding them and methods for making and using them

Patent Gray, Kevin A.; Dirmeier, Richard

The invention relates to enzymes having xylanase, mannanase and/or glucanase activity, e.g., catalyzing hydrolysis of internal .beta.-1,4-xylosidic linkages or endo-.beta.-1,4-glucanase linkages; and/or degrading a linear polysaccharide beta-1,4-xylan into xylose. Thus, the invention provides methods and processes for breaking down hemicellulose, which is a major component of the cell wall of plants, including methods and processes for hydrolyzing hemicelluloses in any plant or wood or wood product, wood waste, paper pulp, paper product or paper waste or byproduct. In addition, methods of designing new xylanases, mannanases and/or glucanases and methods of use thereof are also provided. The xylanases, mannanases and/or glucanasesmore » « less
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Xylanases, nucleic acids encoding them and methods for making and using them

Patent Gray, Kevin A; Dirmeier, Reinhard

The invention relates to enzymes having xylanase, mannanase and/or glucanase activity, e.g., catalyzing hydrolysis of internal .beta.-1,4-xylosidic linkages or endo-.beta.-1,4-glucanase linkages; and/or degrading a linear polysaccharide beta-1,4-xylan into xylose. Thus, the invention provides methods and processes for breaking down hemicellulose, which is a major component of the cell wall of plants, including methods and processes for hydrolyzing hemicelluloses in any plant or wood or wood product, wood waste, paper pulp, paper product or paper waste or byproduct. In addition, methods of designing new xylanases, mannanases and/or glucanases and methods of use thereof are also provided. The xylanases, mannanases and/or glucanasesmore » « less
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Cellulases, nucleic acids encoding them and methods for making and using them

Patent Blum, David; Gemsch Cuenca, Joslin; Dycaico, Mark

This invention relates to molecular and cellular biology and biochemistry. In one aspect, the invention provides polypeptides having cellulase activity, e.g., endoglucanase, cellobiohydrolase, mannanase and/or .beta.-glucosidase activity, polynucleotides encoding these polypeptides, and methods of making and using these polynucleotides and polypeptides. In one aspect, the invention is directed to polypeptides cellulase activity, e.g., endoglucanase, cellobiohydrolase, mannanase and/or .beta.-glucosidase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts.
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Title: Celluloytic enzymes, nucleic acids encoding them and methods for making and using them

Abstract

Citation Formats

Preparation of low alcohol beer patent, November 1988

Production of soft paper products from old newspaper patent, December 1996

Prehydrolysis of lignocellulose patent, January 1998

Process for digesting cellulose containing solid wastes patent, January 1998

Glucose and cellobiose tolerant .beta.-glucosidase from Candida peltata patent, May 1998

Protein having .alpha.-glucosidase activity, DNA having genetic information thereof, and production of .alpha.-glucosidase patent, August 1998

Mobile Bioreactor and Biogenerator patent, November 1998

Treatment of animal waste patent, September 1999

Coniferin beta-glucosidase cDNA for modifying lignin content in plants patent, October 1999

Cloning and amplification of the .beta.-glucosidase gene of Trichoderma reesei patent, February 2000

Method of improving pulp freeness using cellulase and pectinase enzymes patent, May 2000

Treatment of fabrics patent, June 2000

.beta.-glucosidase from filamentous fungi, and uses thereof patent, July 2000

Pretreatment process for conversion of cellulose to fuel ethanol patent, July 2000

Protein having cellulase activities and process for producing the same patent, October 2000

.beta.-glucosidase coding sequences and protein from orpinomyces PC-2 patent, February 2001

Methods for deinking and decolorizing printed paper patent, June 2001

Method for using a vegetable biomass and a screw press to carry out said method patent, June 2001

Process for the production of organic products from diverse biomass sources patent, June 2002

Dilute acid/metal salt hydrolysis of lignocellulosics patent, July 2002

Cellulase preparation comprising an endoglucanase enzyme patent, July 2002

Polypeptide having cellobiohydrolase activity patent, May 2003

Phenolic acid esterases, coding sequences and methods patent, August 2003

Ethanol production with dilute acid hydrolysis using partially dried lignocellulosics patent, December 2003

Endoglucanases and cellulase preparations containing the same patent, July 2005

Epoxide hydrolases, nucleic acids encoding them and methods of making and using them patent, December 2005

Hybrid enzymes patent, October 2006

Expression cloning in filamentous fungi patent, May 2007

Thermal tolerant exoglucanase from Acidothermus cellulolyticus patent, July 2008

Superactive cellulase formulation using cellobiohydrolase-1 from Penicillium funiculosum patent, November 2008

Expression of microbial proteins in plants for production of plants with improved properties patent-application, December 2003

Thermostable cellulase and methods of use patent-application, November 2007

Enzymes for the Treatment of Lignocellulosics, Nucleic Acids Encoding Them and Methods for Making and Using Them patent-application, July 2010

Stagonospora avenae Secretes Multiple Enzymes that Hydrolyze Oat Leaf Saponins journal, October 2000

Comparison of modular and non-modular xylanases as carrier proteins for the efficient secretion of heterologous proteins from Penicillium funiculosum journal, December 2002

Basic local alignment search tool journal, October 1990

Biotechnological applications of phage and cell display journal, February 2001

Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Lipids journal, November 1998

Practical limits of function prediction journal, January 2000

The Cellulosome: The Exocellular Organelle of Clostridium journal, October 1993

Rapid Evolution of Reversible Denaturation and Elevated Melting Temperature in a Microbial Haloalkane Dehalogenase journal, August 2001

Protein tolerance to random amino acid change journal, June 2004

High-Resolution Capillary Gel Electrophoresis of Reducing Oligosaccharides Labeled with 1-Aminopyrene-3,6,8-trisulfonate journal, January 1996

Cello-Oligosaccharide Hydrolysis by Cellobiohydrolase II from Trichoderma Reesei. Association and Rate Constants Derived from an Analysis of Progress Curves journal, September 1996

GEOLOGY:The Next Oil Crisis Looms Large--and Perhaps Close journal, August 1998

OIL OUTLOOK:USGS Optimistic on World Oil Prospects journal, July 2000

FUNCTIONAL GENOMICS: Expression Cloning in the Test Tube journal, August 1997

Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice journal, July 2003

An easy colorimetric assay for screening and qualitative assessment of deiodination and dehalogenation by bacterial cultures journal, June 1999

The use of selection in recovery of transgenic targets for mutation analysis journal, February 1993

Microbial Cellulose Utilization: Fundamentals and Biotechnology journal, September 2002

Crystal structure of the family 7 endoglucanase I (Cel7B) from Humicola insolens at 2.2 Å resolution and identification of the catalytic nucleophile by trapping of the covalent glycosyl-enzyme intermediate journal, October 1998

A Novel, High Performance Enzyme for Starch Liquefaction: DISCOVERY AND OPTIMIZATION OF A LOW pH, THERMOSTABLE α-AMYLASE journal, May 2002

Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca journal, October 1997

Developments in Directed Evolution for Improving Enzyme Functions journal, August 2007

λ ZAP: a bacteriophage λ expression vector with in vivo excision properties journal, January 1988

Crystal structure of the catalytic core domain of the family 6 cellobiohydrolase II, Cel6A, from Humicola insolens, at 1.92 Å resolution journal, January 1999

Directed evolution of an aspartate aminotransferase with new substrate specificities journal, May 1998

A newly described cellulosomal cellobiohydrolase, CelO, from Clostridium thermocellum: investigation of the exo-mode of hydrolysis, and binding capacity to crystalline cellulose journal, January 2002

Preparation of low alcohol beer
patent, November 1988

Production of soft paper products from old newspaper
patent, December 1996

Prehydrolysis of lignocellulose
patent, January 1998

Process for digesting cellulose containing solid wastes
patent, January 1998

Glucose and cellobiose tolerant .beta.-glucosidase from Candida peltata
patent, May 1998

Protein having .alpha.-glucosidase activity, DNA having genetic information thereof, and production of .alpha.-glucosidase
patent, August 1998

Mobile Bioreactor and Biogenerator
patent, November 1998

Treatment of animal waste
patent, September 1999

Coniferin beta-glucosidase cDNA for modifying lignin content in plants
patent, October 1999

Cloning and amplification of the .beta.-glucosidase gene of Trichoderma reesei
patent, February 2000

Method of improving pulp freeness using cellulase and pectinase enzymes
patent, May 2000

Treatment of fabrics
patent, June 2000

.beta.-glucosidase from filamentous fungi, and uses thereof
patent, July 2000

Pretreatment process for conversion of cellulose to fuel ethanol
patent, July 2000

Protein having cellulase activities and process for producing the same
patent, October 2000

.beta.-glucosidase coding sequences and protein from orpinomyces PC-2
patent, February 2001

Methods for deinking and decolorizing printed paper
patent, June 2001

Method for using a vegetable biomass and a screw press to carry out said method
patent, June 2001

Process for the production of organic products from diverse biomass sources
patent, June 2002

Dilute acid/metal salt hydrolysis of lignocellulosics
patent, July 2002

Cellulase preparation comprising an endoglucanase enzyme
patent, July 2002

Polypeptide having cellobiohydrolase activity
patent, May 2003

Phenolic acid esterases, coding sequences and methods
patent, August 2003

Ethanol production with dilute acid hydrolysis using partially dried lignocellulosics
patent, December 2003

Endoglucanases and cellulase preparations containing the same
patent, July 2005

Epoxide hydrolases, nucleic acids encoding them and methods of making and using them
patent, December 2005

Hybrid enzymes
patent, October 2006

Expression cloning in filamentous fungi
patent, May 2007

Thermal tolerant exoglucanase from Acidothermus cellulolyticus
patent, July 2008

Superactive cellulase formulation using cellobiohydrolase-1 from Penicillium funiculosum
patent, November 2008

Expression of microbial proteins in plants for production of plants with improved properties
patent-application, December 2003

Thermostable cellulase and methods of use
patent-application, November 2007

Enzymes for the Treatment of Lignocellulosics, Nucleic Acids Encoding Them and Methods for Making and Using Them
patent-application, July 2010

Stagonospora avenae Secretes Multiple Enzymes that Hydrolyze Oat Leaf Saponins
journal, October 2000

Comparison of modular and non-modular xylanases as carrier proteins for the efficient secretion of heterologous proteins from Penicillium funiculosum
journal, December 2002

Basic local alignment search tool
journal, October 1990

Biotechnological applications of phage and cell display
journal, February 2001

Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Lipids
journal, November 1998

Practical limits of function prediction
journal, January 2000

The Cellulosome: The Exocellular Organelle of Clostridium
journal, October 1993

Rapid Evolution of Reversible Denaturation and Elevated Melting Temperature in a Microbial Haloalkane Dehalogenase
journal, August 2001

Protein tolerance to random amino acid change
journal, June 2004

High-Resolution Capillary Gel Electrophoresis of Reducing Oligosaccharides Labeled with 1-Aminopyrene-3,6,8-trisulfonate
journal, January 1996

Cello-Oligosaccharide Hydrolysis by Cellobiohydrolase II from Trichoderma Reesei. Association and Rate Constants Derived from an Analysis of Progress Curves
journal, September 1996

GEOLOGY:The Next Oil Crisis Looms Large--and Perhaps Close
journal, August 1998

OIL OUTLOOK:USGS Optimistic on World Oil Prospects
journal, July 2000

FUNCTIONAL GENOMICS: Expression Cloning in the Test Tube
journal, August 1997

Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice
journal, July 2003

An easy colorimetric assay for screening and qualitative assessment of deiodination and dehalogenation by bacterial cultures
journal, June 1999

The use of selection in recovery of transgenic targets for mutation analysis
journal, February 1993

Microbial Cellulose Utilization: Fundamentals and Biotechnology
journal, September 2002

Crystal structure of the family 7 endoglucanase I (Cel7B) from Humicola insolens at 2.2 Å resolution and identification of the catalytic nucleophile by trapping of the covalent glycosyl-enzyme intermediate
journal, October 1998

A Novel, High Performance Enzyme for Starch Liquefaction: DISCOVERY AND OPTIMIZATION OF A LOW pH, THERMOSTABLE α-AMYLASE
journal, May 2002

Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca
journal, October 1997

Developments in Directed Evolution for Improving Enzyme Functions
journal, August 2007

λ ZAP: a bacteriophage λ expression vector with in vivo excision properties
journal, January 1988

Crystal structure of the catalytic core domain of the family 6 cellobiohydrolase II, Cel6A, from Humicola insolens, at 1.92 Å resolution
journal, January 1999

Directed evolution of an aspartate aminotransferase with new substrate specificities
journal, May 1998

A newly described cellulosomal cellobiohydrolase, CelO, from Clostridium thermocellum: investigation of the exo-mode of hydrolysis, and binding capacity to crystalline cellulose
journal, January 2002