Miniaturized, high-density, bead-based arrays are provided. Methods of producing and using clonal beads and producing and using miniaturized, high density, bead-based arrays are also provided.
Abstract
Miniaturized, high-density, bead-based arrays are provided. Methods of producing and using clonal beads and producing and using miniaturized, high density, bead-based arrays are also provided.
- Inventors:
-
- Brookline, MA
- Chagrin Falls, OH
- Cambridge, MA
- Durham, NC
- Issue Date:
- Research Org.:
- Harvard University
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 984521
- Patent Number(s):
- 7425431
- Application Number:
- 11/505,073
- Assignee:
- President and Fellows of Harvard College (Cambridge, MA)
- Patent Classifications (CPCs):
-
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
C - CHEMISTRY C12 - BIOCHEMISTRY C12Q - MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
- DOE Contract Number:
- FG02-02ER63445
- Resource Type:
- Patent
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 47 OTHER INSTRUMENTATION
Citation Formats
Church, George M, Shendure, Jay, Porreca, Gregory J, and Zhu, Jun. Miniaturized, high-density, bead-based arrays are provided. Methods of producing and using clonal beads and producing and using miniaturized, high density, bead-based arrays are also provided.. United States: N. p., 2008.
Web.
Church, George M, Shendure, Jay, Porreca, Gregory J, & Zhu, Jun. Miniaturized, high-density, bead-based arrays are provided. Methods of producing and using clonal beads and producing and using miniaturized, high density, bead-based arrays are also provided.. United States.
Church, George M, Shendure, Jay, Porreca, Gregory J, and Zhu, Jun. Tue .
"Miniaturized, high-density, bead-based arrays are provided. Methods of producing and using clonal beads and producing and using miniaturized, high density, bead-based arrays are also provided.". United States. https://www.osti.gov/servlets/purl/984521.
@article{osti_984521,
title = {Miniaturized, high-density, bead-based arrays are provided. Methods of producing and using clonal beads and producing and using miniaturized, high density, bead-based arrays are also provided.},
author = {Church, George M and Shendure, Jay and Porreca, Gregory J and Zhu, Jun},
abstractNote = {Miniaturized, high-density, bead-based arrays are provided. Methods of producing and using clonal beads and producing and using miniaturized, high density, bead-based arrays are also provided.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2008},
month = {9}
}
Works referenced in this record:
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
journal, December 2003
- Shiraki, T.; Kondo, S.; Katayama, S.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 26
Gene expression analysis of plant host-pathogen interactions by SuperSAGE
journal, December 2003
- Matsumura, H.; Reich, S.; Ito, A.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 26
Sandwich hybridization as a convenient method for the detection of nucleic acids in crude samples
journal, January 1983
- Ranki, Marjut; Palva, Airi; Virtanen, Marita
- Gene, Vol. 21, Issue 1-2
Applications of Combinatorial Technologies to Drug Discovery. 1. Background and Peptide Combinatorial Libraries
journal, April 1994
- Gallop, Mark A.; Barrett, Ronald W.; Dower, William J.
- Journal of Medicinal Chemistry, Vol. 37, Issue 9
Advanced sequencing technologies: methods and goals
journal, May 2004
- Shendure, Jay; Mitra, Robi D.; Varma, Chris
- Nature Reviews Genetics, Vol. 5, Issue 5
Discovery of Nanomolar Ligands for 7-Transmembrane G-Protein-Coupled Receptors from a Diverse N-(Substituted)glycine Peptoid Library
journal, August 1994
- Zuckermann, Ronald N.; Martin, Eric J.; Spellmeyer, David C.
- Journal of Medicinal Chemistry, Vol. 37, Issue 17
Digital quantitative measurements of gene expression
journal, January 2004
- Mikkilineni, Venugopal; Mitra, Robi D.; Merritt, Joshua
- Biotechnology and Bioengineering, Vol. 86, Issue 2
Light-directed synthesis of high-density oligonucleotide arrays using semiconductor photoresists
journal, November 1996
- McGall, G.; Labadie, J.; Brock, P.
- Proceedings of the National Academy of Sciences, Vol. 93, Issue 24
Rapid shotgeun cloning utillizing the two base recongition endonuclease Cvi JI
journal, January 1992
- Fitzgerald, Michael C.; Skowron, Peter; Van Etten, James L.
- Nucleic Acids Research, Vol. 20, Issue 14
UV and skin cancer: specific p53 gene mutation in normal skin as a biologically relevant exposure measurement.
journal, January 1994
- Nakazawa, H.; English, D.; Randell, P. L.
- Proceedings of the National Academy of Sciences, Vol. 91, Issue 1
Mechanism of formation of two-dimensional crystals from latex particles on substrates
journal, December 1992
- Denkov, N.; Velev, O.; Kralchevski, P.
- Langmuir, Vol. 8, Issue 12
A versatile solid support system for oligodeoxynucleotide probe-based hybridization assays
journal, January 1991
- Ness, Jeffrey Van; Kalbfleisch, Sonja; Petne, Charles R.
- Nucleic Acids Research, Vol. 19, Issue 12
A Novel Procedure for the Synthesis of Libraries Containing Small Organic Molecules
journal, November 1994
- Carell, Thomas; Wintner, Edward A.; Bashir-Hashemi, A.
- Angewandte Chemie International Edition in English, Vol. 33, Issue 20
In situ localized amplification and contact replication of many individual DNA molecules
journal, December 1999
- Mitra, R.
- Nucleic Acids Research, Vol. 27, Issue 24
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
journal, June 2000
- Brenner, Sydney; Johnson, Maria; Bridgham, John
- Nature Biotechnology, Vol. 18, Issue 6
A simple and efficient enzymatic method for covalent attachment of DNA to cellulose. Application for hybridization-restriction analysis and for in vitro synthesis of DNA probes
journal, January 1986
- Goldkorn, T.; Prockop, D. J.
- Nucleic Acids Research, Vol. 14, Issue 22
Assessment of methods for covalent binding of nucleic acids to magnetic beads, DynabeadsTM, and the characteristics of the bound nucleic acids in hybridization reactions
journal, November 1988
- Lund, V.; Schmid, R.; Rickwood, D.
- Nucleic Acids Research, Vol. 16, Issue 22
DNA SEQUENCING:A Sequencing Method Based on Real-Time Pyrophosphate
journal, July 1998
- Ronaghi, M.
- Science, Vol. 281, Issue 5375
Affinity chromatography of a sequence-specific DNA binding protein using teflon-linked oligonucleotides
journal, February 1988
- Duncan, Craig H.; Cavalier, Sharon L.
- Analytical Biochemistry, Vol. 169, Issue 1
An Artificial Gene for Human Porphobilinogen Synthase Allows Comparison of an Allelic Variation Implicated in Susceptibility to Lead Poisoning
journal, January 2000
- Jaffe, Eileen K.; Volin, Marina; Bronson-Mullins, Colleen R.
- Journal of Biological Chemistry, Vol. 275, Issue 4
Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication.
journal, March 1990
- Guatelli, J. C.; Whitfield, K. M.; Kwoh, D. Y.
- Proceedings of the National Academy of Sciences, Vol. 87, Issue 5, p. 1874-1878
Use of statistical criteria for screening potential homologies in nucleic acid sequences
journal, January 1984
- Kanehisa, Minoru
- Nucleic Acids Research, Vol. 12, Issue 1Part1
Parallel competition analysis of Saccharomyces cerevisiae strains differing by a single base using polymerase colonies
journal, August 2003
- Merritt, J.
- Nucleic Acids Research, Vol. 31, Issue 15
An Unnatural Biopolymer
journal, September 1993
- Cho, Charles Y.; Moran, Edmund J.; Cherry, Sara R.
- Science, Vol. 261, Issue 5126, p. 1303-1305
Serial Analysis of Gene Expression
journal, October 1995
- Velculescu, V. E.; Zhang, L.; Vogelstein, B.
- Science, Vol. 270, Issue 5235
Characterization of mutations and loss of heterozygosity of p53 and K-ras2 in pancreatic cancer cell lines by immobilized polymerase chain reaction
journal, July 2003
- Butz, James; Wickstrom, Eric; Edwards, Jeremy
- BMC Biotechnology, Vol. 3, Issue 1, p. 11
Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations
journal, July 2003
- Dressman, D.; Yan, H.; Traverso, G.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 15, p. 8817-8822
Using the transcriptome to annotate the genome
journal, May 2002
- Saha, Saurabh; Sparks, Andrew B.; Rago, Carlo
- Nature Biotechnology, Vol. 20, Issue 5
Mathematical models of diffusion-constrained polymerase chain reactions: basis of high-throughput nucleic acid assays and simple self-organizing systems
journal, May 2004
- Aach, John; Church, George M.
- Journal of Theoretical Biology, Vol. 228, Issue 1
"Diversomers": an approach to nonpeptide, nonoligomeric chemical diversity.
journal, August 1993
- DeWitt, S. H.; Kiely, J. S.; Stankovic, C. J.
- Proceedings of the National Academy of Sciences, Vol. 90, Issue 15
A Solution-Phase Screening Procedure for the Isolation of Active Compounds from a Library of Molecules
journal, November 1994
- Carell, Thomas; Wintner, Edward A.; Rebek, Julius
- Angewandte Chemie International Edition in English, Vol. 33, Issue 20
Digital genotyping and haplotyping with polymerase colonies
journal, May 2003
- Mitra, R. D.; Butty, V. L.; Shendure, J.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 10
Use of DNA immobilized on plastic and agarose supports to detect DNA by sandwich hybridization.
journal, September 1985
- Polsky-Cynkin, R.; Parsons, G. H.; Allerdt, L.
- Clinical Chemistry, Vol. 31, Issue 9
Rapid hybridization kinetics of DNA attached to submkron latex particles
journal, January 1987
- Wolf, Stanley F.; Haines, Lora; Fisch, Judith
- Nucleic Acids Research, Vol. 15, Issue 7
DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis
journal, May 2002
- Hoover, D. M.
- Nucleic Acids Research, Vol. 30, Issue 10
Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format.
journal, February 1989
- Kwoh, D. Y.; Davis, G. R.; Whitfield, K. M.
- Proceedings of the National Academy of Sciences, Vol. 86, Issue 4, p. 1173-1177
Synthesis of deoxyoligonucleotides on a polymer support
journal, June 1981
- Matteucci, M. D.; Caruthers, M. H.
- Journal of the American Chemical Society, Vol. 103, Issue 11
Fluorescent in situ sequencing on polymerase colonies
journal, September 2003
- Mitra, Robi D.; Shendure, Jay; Olejnik, Jerzy
- Analytical Biochemistry, Vol. 320, Issue 1
Expression profiling using cDNA microarrays
journal, January 1999
- Duggan, David J.; Bittner, Michael; Chen, Yidong
- Nature Genetics, Vol. 21, Issue S1
Exponential Amplification of Recombinant- RNA Hybridization Probes
journal, October 1988
- Lizardi, Paul M.; Guerra, Cesar E.; Lomeli, Hilda
- Bio/Technology, Vol. 6, Issue 10
Gene2Oligo: oligonucleotide design for in vitro gene synthesis
journal, July 2004
- Rouillard, J. -M.; Lee, W.; Truan, G.
- Nucleic Acids Research, Vol. 32, Issue Web Server
A rapid method of gene detection using DNA bound to Sephacryl
journal, January 1985
- Langdale, Jane A.; Malcolm, Alan D. B.
- Gene, Vol. 36, Issue 3
In Vivo Protein Cyclization Promoted by a Circularly Permuted Synechocystis sp. PCC6803 DnaB Mini-intein
journal, December 2001
- Williams, Neal K.; Prosselkov, Pavel; Liepinsh, Edvards
- Journal of Biological Chemistry, Vol. 277, Issue 10
Applications of magnetic beads with covalently attached oligonucleotides in hybridization: Isolation and detection of specific measles virus mRNA from a crude cell lysate
journal, August 1990
- Albretsen, Catrine; Kalland, Karl-Henning; Haukanes, Bjørn-Ivar
- Analytical Biochemistry, Vol. 189, Issue 1
Recursive deconvolution of combinatorial chemical libraries.
journal, November 1994
- Erb, E.; Janda, K. D.; Brenner, S.
- Proceedings of the National Academy of Sciences, Vol. 91, Issue 24
A ligase-mediated gene detection technique
journal, August 1988
- Landegren, U.; Kaiser, R.; Sanders, J.
- Science, Vol. 241, Issue 4869
Single Molecule Profiling of Alternative Pre-mRNA Splicing
journal, August 2003
- Zhu, J.
- Science, Vol. 301, Issue 5634
Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
journal, September 2005
- Shendure, J.
- Science, Vol. 309, Issue 5741