Site specific incorporation of heavy atom-containing unnatural amino acids into proteins for structure determination
Abstract
Translation systems and other compositions including orthogonal aminoacyl tRNA-synthetases that preferentially charge an orthogonal tRNA with an iodinated or brominated amino acid are provided. Nucleic acids encoding such synthetases are also described, as are methods and kits for producing proteins including heavy atom-containing amino acids, e.g., brominated or iodinated amino acids. Methods of determining the structure of a protein, e.g., a protein into which a heavy atom has been site-specifically incorporated through use of an orthogonal tRNA/aminoacyl tRNA-synthetase pair, are also described.
- Inventors:
- Issue Date:
- Research Org.:
- The Scripps Research Inst., La Jolla, CA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 984459
- Patent Number(s):
- 7399619
- Application Number:
- 11/137,850
- Assignee:
- The Scripps Research Institute (La Jolla, CA)
- Patent Classifications (CPCs):
-
C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07H - SUGARS
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
- DOE Contract Number:
- FG02-03ER46051
- Resource Type:
- Patent
- Resource Relation:
- Patent File Date: 2005 May 24
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Xie, Jianming, Wang, Lei, Wu, Ning, and Schultz, Peter G. Site specific incorporation of heavy atom-containing unnatural amino acids into proteins for structure determination. United States: N. p., 2008.
Web.
Xie, Jianming, Wang, Lei, Wu, Ning, & Schultz, Peter G. Site specific incorporation of heavy atom-containing unnatural amino acids into proteins for structure determination. United States.
Xie, Jianming, Wang, Lei, Wu, Ning, and Schultz, Peter G. Tue .
"Site specific incorporation of heavy atom-containing unnatural amino acids into proteins for structure determination". United States. https://www.osti.gov/servlets/purl/984459.
@article{osti_984459,
title = {Site specific incorporation of heavy atom-containing unnatural amino acids into proteins for structure determination},
author = {Xie, Jianming and Wang, Lei and Wu, Ning and Schultz, Peter G.},
abstractNote = {Translation systems and other compositions including orthogonal aminoacyl tRNA-synthetases that preferentially charge an orthogonal tRNA with an iodinated or brominated amino acid are provided. Nucleic acids encoding such synthetases are also described, as are methods and kits for producing proteins including heavy atom-containing amino acids, e.g., brominated or iodinated amino acids. Methods of determining the structure of a protein, e.g., a protein into which a heavy atom has been site-specifically incorporated through use of an orthogonal tRNA/aminoacyl tRNA-synthetase pair, are also described.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2008},
month = {7}
}
Works referenced in this record:
Enzymatic Phosphorylation of Unnatural Nucleosides
journal, December 2002
- Wu, Yiqin; Fa, Ming; Tae, Eunju Lee
- Journal of the American Chemical Society, Vol. 124, Issue 49
Bioincorporation of telluromethionine into proteins: a promising new approach for X-ray structure analysis of proteins
journal, July 1997
- Budisa, Nediljko; Karnbrock, Wilhelm; Steinbacher, Stefan
- Journal of Molecular Biology, Vol. 270, Issue 4, p. 616-623
Quadruplet codons: implications for code expansion and the specification of translation step size
journal, April 2000
- Moore, Barry; Persson, Britt C.; Nelson, Chad C.
- Journal of Molecular Biology, Vol. 298, Issue 2
Progress toward the evolution of an organism with an expanded genetic code
journal, April 1999
- Liu, David R.; Schultz, Peter G.
- Proceedings of the National Academy of Sciences, Vol. 96, Issue 9, p. 4780-4785
Bio–incorporation of telluromethionine into buried residues of dihydrofolate reductase
journal, May 1994
- Boles, Jeffrey O.; Lewinski, Krzysztof; Kunkle, Marci
- Nature Structural & Molecular Biology, Vol. 1, Issue 5, p. 283-284
The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination
journal, September 2004
- Xie, Jianming; Wang, Lei; Wu, Ning
- Nature Biotechnology, Vol. 22, Issue 10
Exploring the Limits of Codon and Anticodon Size
journal, February 2002
- Anderson, J. Christopher; Magliery, Thomas J.; Schultz, Peter G.
- Chemistry & Biology, Vol. 9, Issue 2, p. 237-244
Efficient introduction of aryl bromide functionality into proteins in vivo
journal, February 2000
- Sharma, Nandita; Furter, Rolf; Kast, Peter
- FEBS Letters, Vol. 467, Issue 1, p. 37-40
An unnatural base pair for incorporating amino acid analogs into proteins
journal, February 2002
- Hirao, Ichiro; Ohtsuki, Takashi; Fujiwara, Tsuyoshi
- Nature Biotechnology, Vol. 20, Issue 2
In vitro protein engineering using synthetic tRNAAla with different anticodons
journal, August 1993
- Ma, Chunhua; Kudlicki, Wieslaw; Odom, O. W.
- Biochemistry, Vol. 32, Issue 31
An Expanded Eukaryotic Genetic Code
journal, August 2003
- Chin, Jason W.; Cropp, T. Ashton; Anderson, J. Christopher
- Science, Vol. 301, Issue 5635, p. 964-967
Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli
journal, August 2002
- Chin, J. W.; Martin, A. B.; King, D. S.
- Proceedings of the National Academy of Sciences, Vol. 99, Issue 17, p. 11020-11024
Efficient Incorporation of Nonnatural Amino Acids with Large Aromatic Groups into Streptavidin in In Vitro Protein Synthesizing Systems
journal, January 1999
- Hohsaka, Takahiro; Kajihara, Daisuke; Ashizuka, Yuki
- Journal of the American Chemical Society, Vol. 121, Issue 1
Expanding the genetic code: selection of efficient suppressors of four-base codons and identification of “shifty” four-base codons with a library approach in Escherichia coli
journal, March 2001
- Magliery, Thomas J.; Anderson, J. Christopher; Schultz, Peter G.
- Journal of Molecular Biology, Vol. 307, Issue 3, p. 755-769
Incorporation of Two Different Nonnatural Amino Acids Independently into a Single Protein through Extension of the Genetic Code
journal, December 1999
- Hohsaka, Takahiro; Ashizuka, Yuki; Sasaki, Hiroshi
- Journal of the American Chemical Society, Vol. 121, Issue 51
Unnatural Amino Acid Mutagenesis of Green Fluorescent Protein
journal, November 2002
- Wang, Lei; Xie, Jianming; Deniz, Ashok A.
- The Journal of Organic Chemistry, Vol. 68, Issue 1, p. 174-176
Relaxing the substrate specificity of an aminoacyl-tRNA synthetase allows in vitro and in vivo synthesis of proteins containing unnatural amino acids
journal, May 1995
- Ibba, Michael; Hennecke, Hauke
- FEBS Letters, Vol. 364, Issue 3, p. 272-275
A New Functional Suppressor tRNA/Aminoacyl−tRNA Synthetase Pair for the in Vivo Incorporation of Unnatural Amino Acids into Proteins
journal, May 2000
- Wang, Lei; Magliery, Thomas J.; Liu, David R.
- Journal of the American Chemical Society, Vol. 122, Issue 20, p. 5010-5011
Substrate Specificity Is Determined by Amino Acid Binding Pocket Size in Escherichia coli Phenylalanyl-tRNA Synthetase
journal, June 1994
- Ibba, Michael; Kast, Peter; Hennecke, Hauke
- Biochemistry, Vol. 33, Issue 23
Biosynthesis of Proteins Incorporating a Versatile Set of Phenylalanine Analogues
journal, March 2002
- Kirshenbaum, Kent; Carrico, Isaac S.; Tirrell, David A.
- ChemBioChem, Vol. 3, Issue 2-3, p. 235-237
Programming peptidomimetic syntheses by translating genetic codes designed de novo
journal, May 2003
- Forster, A. C.; Tan, Z.; Nalam, M. N. L.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 11, p. 6353-6357
AMERSHAM PRIZE WINNER: Expanding the Genetic Code
journal, October 2003
- Wang, L.
- Science, Vol. 302, Issue 5645
Expanding tRNA recognition of a tRNA synthetase by a single amino acid change
journal, May 2003
- Feng, L.; Tumbula-Hansen, D.; Toogood, H.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 10, p. 5676-5681
Addition of the keto functional group to the genetic code of Escherichia coli
journal, December 2002
- Wang, L.; Zhang, Z.; Brock, A.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 1, p. 56-61
Exploiting unassigned codons in Micrococcus luteus for tRNA-based amino acid mutagenesis
journal, November 1997
- Kowal, A.
- Nucleic Acids Research, Vol. 25, Issue 22
Expanding the Genetic Code of Escherichia coli
journal, April 2001
- Wang, L.; Brock, A.; Herberich, B.
- Science, Vol. 292, Issue 5516, p. 498-500
Expansion of the genetic code: Site-directed p-fluoro-phenylalanine incorporation in Escherichia coli
journal, February 1998
- Furter, Rolf
- Protein Science, Vol. 7, Issue 2, p. 419-426
Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells
journal, November 2002
- Sakamoto, K.
- Nucleic Acids Research, Vol. 30, Issue 21, p. 4692-4699