On-line DNA analysis system with rapid thermal cycling
Abstract
An apparatus particularly suited for subjecting biological samples to any necessary sample preparation tasks, subjecting the sample to rapid thermal cycling, and then subjecting the sample to subsequent on-line analysis using one or more of a number of analytical techniques. The apparatus includes a chromatography device including an injection means, a chromatography pump, and a chromatography column. In addition, the apparatus also contains a capillary electrophoresis device consisting of a capillary electrophoresis column with an inlet and outlet end, a means of injection, and means of applying a high voltage to cause the differential migration of species of interest through the capillary column. Effluent from the liquid chromatography column passes over the inlet end of the capillary electrophoresis column through a tee structure and when the loading of the capillary electrophoresis column is desired, a voltage supply is activated at a precise voltage and polarity over a specific duration to cause sample species to be diverted from the flowing stream to the capillary electrophoresis column. A laser induced fluorescence detector preferably is used to analyze the products separated while in the electrophoresis column.
- Inventors:
-
- Salt Lake City, UT
- Issue Date:
- Research Org.:
- Oak Ridge Associated Universities (ORAU), Oak Ridge, TN (United States)
- OSTI Identifier:
- 872436
- Patent Number(s):
- 5935522
- Assignee:
- University of Utah Research Foundation (Salt Lake City, UT)
- Patent Classifications (CPCs):
-
B - PERFORMING OPERATIONS B01 - PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL B01D - SEPARATION
B - PERFORMING OPERATIONS B01 - PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL B01L - CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- DOE Contract Number:
- AC05-76OR00033
- Resource Type:
- Patent
- Country of Publication:
- United States
- Language:
- English
- Subject:
- on-line; dna; analysis; rapid; thermal; cycling; apparatus; particularly; suited; subjecting; biological; samples; sample; preparation; tasks; subsequent; analytical; techniques; chromatography; device; including; injection; means; pump; column; addition; contains; capillary; electrophoresis; consisting; inlet; outlet; applying; voltage; differential; migration; species; effluent; liquid; passes; tee; structure; loading; desired; supply; activated; precise; polarity; specific; duration; diverted; flowing; stream; laser; induced; fluorescence; detector; preferably; analyze; products; separated; biological samples; liquid chromatograph; sample preparation; capillary column; voltage supply; particularly suited; capillary electrophoresis; thermal cycling; device including; liquid chromatography; laser induced; rapid thermal; chromatography column; flowing stream; analytical techniques; injection means; fluorescence detector; induced fluorescence; biological sample; electrophoresis device; analytical technique; /422/73/204/210/435/436/
Citation Formats
Swerdlow, Harold P, and Wittwer, Carl T. On-line DNA analysis system with rapid thermal cycling. United States: N. p., 1999.
Web.
Swerdlow, Harold P, & Wittwer, Carl T. On-line DNA analysis system with rapid thermal cycling. United States.
Swerdlow, Harold P, and Wittwer, Carl T. Fri .
"On-line DNA analysis system with rapid thermal cycling". United States. https://www.osti.gov/servlets/purl/872436.
@article{osti_872436,
title = {On-line DNA analysis system with rapid thermal cycling},
author = {Swerdlow, Harold P and Wittwer, Carl T},
abstractNote = {An apparatus particularly suited for subjecting biological samples to any necessary sample preparation tasks, subjecting the sample to rapid thermal cycling, and then subjecting the sample to subsequent on-line analysis using one or more of a number of analytical techniques. The apparatus includes a chromatography device including an injection means, a chromatography pump, and a chromatography column. In addition, the apparatus also contains a capillary electrophoresis device consisting of a capillary electrophoresis column with an inlet and outlet end, a means of injection, and means of applying a high voltage to cause the differential migration of species of interest through the capillary column. Effluent from the liquid chromatography column passes over the inlet end of the capillary electrophoresis column through a tee structure and when the loading of the capillary electrophoresis column is desired, a voltage supply is activated at a precise voltage and polarity over a specific duration to cause sample species to be diverted from the flowing stream to the capillary electrophoresis column. A laser induced fluorescence detector preferably is used to analyze the products separated while in the electrophoresis column.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Fri Jan 01 00:00:00 EST 1999},
month = {Fri Jan 01 00:00:00 EST 1999}
}
Works referenced in this record:
Allelic discrimination by nick-translation PCR with fluorgenic probes
journal, August 1993
- Lee, Linda G.; Connell, Charles R.; Bloch, Will
- Nucleic Acids Research, Vol. 21, Issue 16, p. 3761-3766
Automated polymerase chain reaction in capillary tubes with hot air
journal, January 1989
- Wittwer, C. T.; Fillmore, G. C.; Hillyard, D. R.
- Nucleic Acids Research, Vol. 17, Issue 11
Quantitative Fluorescence Method for Continuous Measurement of DNA Hybridization Kinetics Using a Fluorescent Intercalator
journal, July 1995
- Yguerabide, J.; Ceballos, A.
- Analytical Biochemistry, Vol. 228, Issue 2
PCR in a silicon microstructure
journal, September 1994
- Wilding, P.; Shoffner, M. A.; Kricka, L. J.
- Clinical Chemistry, Vol. 40, Issue 9
PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates.
journal, March 1994
- Barnes, W. M.
- Proceedings of the National Academy of Sciences, Vol. 91, Issue 6
Homogeneous Quantitative Assay of Hepatitis C Virus RNA by Polymerase Chain Reaction in the Presence of a Fluorescent Intercalater
journal, August 1995
- Ishiguro, T.; Saitoh, J.; Yawata, H.
- Analytical Biochemistry, Vol. 229, Issue 2
Analytical strategies for the use of DNA probes
journal, February 1988
- Matthews, Jayne A.; Kricka, Larry J.
- Analytical Biochemistry, Vol. 169, Issue 1, p. 1-25
Detection of rare mRNAs via quantitative RT-PCR
journal, August 1992
- Weis, J.; Tan, S.; Martin, B.
- Trends in Genetics, Vol. 8, Issue 8
Continuous Fluorescence Monitoring of Rapid Cycle DNA Amplification
journal, January 1997
- Wittwer, Carl T.; Herrmann, Mark G.; Moss, Alan A.
- BioTechniques, Vol. 22, Issue 1
Biotech nightmare: does Cetus own PCR?
journal, February 1991
- Barinaga, M.
- Science, Vol. 251, Issue 4995
Molecular Beacons: Probes that Fluoresce upon Hybridization
journal, March 1996
- Tyagi, Sanjay; Kramer, Fred Russell
- Nature Biotechnology, Vol. 14, Issue 3, p. 303-308
Rapid Cycle DNA Amplification
book, January 1994
- Wittwer, Carl T.; Reed, Gudrun B.; Ririe, Kirk M.
- The Polymerase Chain Reaction
Influence of nearest neighbor sequence on the stability of base pair mismatches in long DNA: determination by temperature-gradient gel electrophoresis
journal, January 1993
- Ke, Song-Hua; Wartell, Roger M.
- Nucleic Acids Research, Vol. 21, Issue 22
PCR Instrumentation: Where Do We Stand?
book, January 1994
- Oste, Christian C.
- The Polymerase Chain Reaction
Rapid cycle allele-specific amplification: studies with the cystic fibrosis delta F508 locus
journal, May 1993
- Wittwer, C. T.; Marshall, B. C.; Reed, G. H.
- Clinical Chemistry, Vol. 39, Issue 5
Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization.
journal, June 1995
- Livak, K. J.; Flood, S. J.; Marmaro, J.
- Genome Research, Vol. 4, Issue 6
Detection of Energy Transfer and Fluorescence Quenching
book, January 1992
- Morrison, Larry E.
- Nonisotopic DNA Probe Techniques
Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solution
journal, March 1993
- Morrison, Larry E.; Stols, Lucy M.
- Biochemistry, Vol. 32, Issue 12
Simultaneous Amplification and Detection of Specific DNA Sequences
journal, April 1992
- Higuchi, Russell; Dollinger, Gavin; Walsh, P. Sean
- Bio/Technology, Vol. 10, Issue 4, p. 413-417
Assay of DNA Denaturation by Polymerase Chain Reaction-Driven Fluorescent Label Incorporation and Fluorescence Resonance Energy Transfer
journal, September 1994
- Hiyoshi, M.; Hosoi, S.
- Analytical Biochemistry, Vol. 221, Issue 2
Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical wave guides.
journal, July 1995
- Stimpson, D. I.; Hoijer, J. V.; Hsieh, W. T.
- Proceedings of the National Academy of Sciences, Vol. 92, Issue 14
Minimizing the time required for DNA amplification by efficient heat transfer to small samples
journal, May 1990
- Wittwer, Carl T.; Fillmore, G. Chris; Garling, David J.
- Analytical Biochemistry, Vol. 186, Issue 2
Effect of heat denaturation of target DNA on the PCR amplification
journal, January 1993
- Gustafson, Corinne E.; Alm, Richard A.; Trust, Trevor J.
- Gene, Vol. 123, Issue 2
Real-Time Monitoring of DNA Manipulations Using Biosensor Technology
journal, January 1995
- Nilsson, P.; Persson, B.; Uhlen, M.
- Analytical Biochemistry, Vol. 224, Issue 1
The LightCycler TM : A Microvolume Multisample Fluorimeter with Rapid Temperature Control
journal, January 1997
- Wittwer, C. T.; Ririe, K. M.; Andrew, R. V.
- BioTechniques, Vol. 22, Issue 1
A Personal Technology Transfer Effort in DNA Diagnostics
journal, November 1994
- Barinaga, M.
- Science, Vol. 266, Issue 5189
Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase.
journal, August 1991
- Holland, P. M.; Abramson, R. D.; Watson, R.
- Proceedings of the National Academy of Sciences, Vol. 88, Issue 16, p. 7276-7280
Kinetic PCR Analysis: Real-time Monitoring of DNA Amplification Reactions
journal, September 1993
- Higuchi, Russell; Fockler, Carita; Dollinger, Gavin
- Nature Biotechnology, Vol. 11, Issue 9
Digoxigenin-Labeled Probes Amplified from Genomic DNA Detect T-Cell Gene Rearrangements
journal, May 1992
- Hopfenbeck, James A.; Holden, Joseph A.; Wittwer, Carl T.
- American Journal of Clinical Pathology, Vol. 97, Issue 5
Cyanine dye labeling reagents containing isothiocyanate groups
journal, January 1989
- Mujumdar, Ratnakar B.; Ernst, Lauren A.; Mujumdar, Swati R.
- Cytometry, Vol. 10, Issue 1
Exact Quantification of DNA–RNA Copy Numbers by PCR–TGGE
book, January 1995
- Kang, Jie; Schäfer, Peter; Kühn, Joachim E.
- PCR Strategies
Automated closed-vessel system for in vitro diagnostics based on polymerase chain reaction
journal, September 1993
- Findlay, J. B.; Atwood, S. M.; Bergmeyer, L.
- Clinical Chemistry, Vol. 39, Issue 9
Fluorescence Monitoring of Rapid Cycle PCR for Quantification
book, January 1998
- Wittwer, Carl; Ririe, Kirk; Rasmussen, Randy
- Gene Quantification
Association of idiopathic venous thromboembolism with single point-mutation at Arg506 of factor V
journal, June 1994
- Voorberg, J.; Roelse, J.; Mertens, K.
- The Lancet, Vol. 343, Issue 8912
Mutation in blood coagulation factor V associated with resistance to activated protein C
journal, May 1994
- Bertina, Rogier M.; Koeleman, Bobby P. C.; Koster, Ted
- Nature, Vol. 369, Issue 6475
High resolution experimental and theoretical thermal denaturation studies on small overlapping restriction fragments containing the Escherichia coli lactose genetic control region.
journal, March 1981
- Hillen, W.; Goodman, T. C.; Benight, A. S.
- Journal of Biological Chemistry, Vol. 256, Issue 6
Product Differentiation by Analysis of DNA Melting Curves during the Polymerase Chain Reaction
journal, February 1997
- Ririe, Kirk M.; Rasmussen, Randy P.; Wittwer, Carl T.
- Analytical Biochemistry, Vol. 245, Issue 2
Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer.
journal, December 1988
- Cardullo, R. A.; Agrawal, S.; Flores, C.
- Proceedings of the National Academy of Sciences, Vol. 85, Issue 23
Fully Automated DNA Reaction and Analysis in a Fluidic Capillary Instrument
journal, March 1997
- Swerdlow, Harold; Jones, Barbara J.; Wittwer, Carl T.
- Analytical Chemistry, Vol. 69, Issue 5
Real time kinetics of restriction endonuclease cleavage monitored by fluorescence resonance energy transfer
journal, January 1994
- Ghosh, Soumitra S.; Eis, Peggy S.; Blumeyer, Kirsten
- Nucleic Acids Research, Vol. 22, Issue 15