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Title: Pathway integration and expression in host cells

Abstract

Provided herein are methods for integrating a gene of interest into a chromosome of a host cell. In some embodiments, the methods include introducing into a host cell a first plasmid comprising a transposase coding sequence and a donor sequence, which includes a selectable marker coding sequence flanked by a first and a second lox site and is itself flanked by inverted repeats recognized by the transposase. Following transposase-mediated chromosomal integration of the donor sequence into the host cell, a second plasmid is introduced, which comprises the gene of interest and a second selectable marker coding sequence, both flanked by a first and a second lox site. The gene of interest is chromosomally integrated into the host cell by recombinase-mediated cassette exchange (RMCE) between the donor sequence and the second plasmid via Cre-/cuc recombination. Further provided herein are host cells, vectors, and methods of producing a product related thereto.

Inventors:
; ; ; ; ;
Issue Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1998473
Patent Number(s):
11674145
Application Number:
16/072,174
Assignee:
The Regents of the University of California (Oakland, CA)
DOE Contract Number:  
AC02-05CH11231
Resource Type:
Patent
Resource Relation:
Patent File Date: 01/24/2017
Country of Publication:
United States
Language:
English

Citation Formats

Yoshikuni, Yasuo, Wang, Gaoyan, Zhao, Zhiying, Coates, Robert Cameron, Cheng, Jan-Fang, and Robinson, David. Pathway integration and expression in host cells. United States: N. p., 2023. Web.
Yoshikuni, Yasuo, Wang, Gaoyan, Zhao, Zhiying, Coates, Robert Cameron, Cheng, Jan-Fang, & Robinson, David. Pathway integration and expression in host cells. United States.
Yoshikuni, Yasuo, Wang, Gaoyan, Zhao, Zhiying, Coates, Robert Cameron, Cheng, Jan-Fang, and Robinson, David. Tue . "Pathway integration and expression in host cells". United States. https://www.osti.gov/servlets/purl/1998473.
@article{osti_1998473,
title = {Pathway integration and expression in host cells},
author = {Yoshikuni, Yasuo and Wang, Gaoyan and Zhao, Zhiying and Coates, Robert Cameron and Cheng, Jan-Fang and Robinson, David},
abstractNote = {Provided herein are methods for integrating a gene of interest into a chromosome of a host cell. In some embodiments, the methods include introducing into a host cell a first plasmid comprising a transposase coding sequence and a donor sequence, which includes a selectable marker coding sequence flanked by a first and a second lox site and is itself flanked by inverted repeats recognized by the transposase. Following transposase-mediated chromosomal integration of the donor sequence into the host cell, a second plasmid is introduced, which comprises the gene of interest and a second selectable marker coding sequence, both flanked by a first and a second lox site. The gene of interest is chromosomally integrated into the host cell by recombinase-mediated cassette exchange (RMCE) between the donor sequence and the second plasmid via Cre-/cuc recombination. Further provided herein are host cells, vectors, and methods of producing a product related thereto.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2023},
month = {6}
}

Works referenced in this record:

Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system
journal, September 2002


Engineering complex biological systems in bacteria through recombinase-assisted genome engineering
journal, May 2014


Implementation of stable and complex biological systems through recombinase-assisted genome engineering
journal, September 2013


Methods, Cells & Organisms
patent-application, March 2015


Chromosomal DNA Integration Method
patent-application, December 2012


TG1 integrase-based system for site-specific gene integration into bacterial genomes
journal, October 2012


Site-specific recombinases as tools for heterologous gene integration
journal, August 2011


Genome Engineering Using Site-Specific Recombinases
journal, March 2002


Modified Transposon Vector and its Use
patent-application, November 2010