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Title: Reagent to label proteins via lysine isopeptide bonds

Abstract

Covalently cross-linked pilus polymers displayed on the cell surface of Gram-positive bacteria are assembled by class C sortase enzymes. These pilus-specific transpeptidases located on the bacterial membrane catalyze a two-step protein ligation reaction—first, cleaving the LPXTG motif of one pilin protomer to form an acyl-enzyme intermediate, and second, joining the terminal threonine to the nucleophilic lysine residue residing within the pilin motif of another pilin protomer. Informed by the high-resolution crystal structures of corynebacterial pilus-specific sortase (SrtA) and by developing structural variants of the sortase enzyme whose catalytic pocket has been unmasked by activating mutations, we have developed new reagents capable of forming isopeptide bonds in vitro. The reagents disclosed herein can catalyze ligation of isolated SpaA domains in vitro provide a facile and versatile new platform for protein engineering and bio-conjugation that has major implications for biotechnology.

Inventors:
; ; ; ; ;
Issue Date:
Research Org.:
Univ. of California, Los Angeles, CA (United States); Univ. of Texas, Austin, TX (United States)
Sponsoring Org.:
USDOE; National Institutes of Health (NIH)
OSTI Identifier:
1998327
Patent Number(s):
11634699
Application Number:
17/052,116
Assignee:
The Regents of the University of California (Oakland, CA); The Board of Regents of The University of Texas System (Austin, TX)
DOE Contract Number:  
FC02-02ER63421; DE017382; DE025015
Resource Type:
Patent
Resource Relation:
Patent File Date: 05/01/2019
Country of Publication:
United States
Language:
English

Citation Formats

Clubb, Robert T., Amer, Brendan Rayhan, Fu, Janine Y., McConnell, Scott, Ton-That, Hung, and Chang, Chungyu. Reagent to label proteins via lysine isopeptide bonds. United States: N. p., 2023. Web.
Clubb, Robert T., Amer, Brendan Rayhan, Fu, Janine Y., McConnell, Scott, Ton-That, Hung, & Chang, Chungyu. Reagent to label proteins via lysine isopeptide bonds. United States.
Clubb, Robert T., Amer, Brendan Rayhan, Fu, Janine Y., McConnell, Scott, Ton-That, Hung, and Chang, Chungyu. Tue . "Reagent to label proteins via lysine isopeptide bonds". United States. https://www.osti.gov/servlets/purl/1998327.
@article{osti_1998327,
title = {Reagent to label proteins via lysine isopeptide bonds},
author = {Clubb, Robert T. and Amer, Brendan Rayhan and Fu, Janine Y. and McConnell, Scott and Ton-That, Hung and Chang, Chungyu},
abstractNote = {Covalently cross-linked pilus polymers displayed on the cell surface of Gram-positive bacteria are assembled by class C sortase enzymes. These pilus-specific transpeptidases located on the bacterial membrane catalyze a two-step protein ligation reaction—first, cleaving the LPXTG motif of one pilin protomer to form an acyl-enzyme intermediate, and second, joining the terminal threonine to the nucleophilic lysine residue residing within the pilin motif of another pilin protomer. Informed by the high-resolution crystal structures of corynebacterial pilus-specific sortase (SrtA) and by developing structural variants of the sortase enzyme whose catalytic pocket has been unmasked by activating mutations, we have developed new reagents capable of forming isopeptide bonds in vitro. The reagents disclosed herein can catalyze ligation of isolated SpaA domains in vitro provide a facile and versatile new platform for protein engineering and bio-conjugation that has major implications for biotechnology.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2023},
month = {4}
}

Works referenced in this record:

Sortase enzymes in Gram-positive bacteria: Sortase enzymes in Gram-positive bacteria
journal, November 2011


Protein Labeling via a Specific Lysine-Isopeptide Bond Using the Pilin Polymerizing Sortase from Corynebacterium diphtheriae
journal, June 2018


Identification of Sortase Gene
patent-application, January 2003


Acyl Enzyme Intermediates in Sortase-Catalyzed Pilus Morphogenesis in Gram-Positive Bacteria
journal, July 2009


The “Lid” in the Streptococcus pneumoniae SrtC1 Sortase Adopts a Rigid Structure that Regulates Substrate Access to the Active Site
journal, May 2016


Assembly of pili on the surface of Corynebacterium diphtheriae: Corynebacterium diphtheriae pili
journal, November 2003


The Corynebacterium diphtheriae shaft pilin SpaA is built of tandem Ig-like modules with stabilizing isopeptide and disulfide bonds
journal, September 2009


Sortase Molecules and Uses Thereof
patent-application, August 2017


Effects of Tonicity-Adjusting and Surfactant Agents on the Antimicrobial Activity of Alexidine
journal, March 2011


A Noncanonical Function of Sortase Enables Site‐Specific Conjugation of Small Molecules to Lysine Residues in Proteins
journal, October 2014


In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking
journal, May 2018


Identification of essential genes in microorganisms
patent-application, February 2004