Modulating the level of components within plants

Bobzin, Steven Craig; Apuya, Nestor; Chiang, Karen; Doukhanina, Elena; Feldmann, Kenneth; Jankowski, Boris; Margolles-Clark, Emilio; Mumenthaler, Daniel; Okamuro, Jack; Park, Joon-Hyun; Van Fleet, Jennifer E.; Zhang, Ke

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Title: Modulating the level of components within plants

Abstract

Materials and Methods for identifying lignin regulatory region-regulatory protein associations are disclosed. Materials and methods for modulating lignin accumulation are also disclosed. In addition, methods and materials for modulating (e.g., increasing or decreasing) the level of a component (e.g., protein, oil, lignin, carbon, a carotenoid, or a triterpenoid) in plants are disclosed.

Inventors:: Bobzin, Steven Craig; Apuya, Nestor; Chiang, Karen; Doukhanina, Elena; Feldmann, Kenneth; Jankowski, Boris; Margolles-Clark, Emilio; Mumenthaler, Daniel; Okamuro, Jack; Park, Joon-Hyun; Van Fleet, Jennifer E.; Zhang, Ke

Issue Date:: Tue Sep 12 00:00:00 EDT 2017

Research Org.:: Ceres, Inc. Thousand Oaks, CA (United States)

Sponsoring Org.:: USDOE

OSTI Identifier:: 1390176

Patent Number(s):: 9758790

Application Number:: 13/584,421

Assignee:: Ceres, Inc.

Patent Classifications (CPCs):: C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES

C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES

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C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES
C07K14/415 - from plants

C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
C12N15/8241 - {Phenotypically and genetically modified plants via recombinant DNA technology}
C12N15/8247 - {involving modified lipid metabolism, e.g. seed oil composition}
C12N15/8255 - {involving lignin biosynthesis}

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DOE Contract Number:: FG02-05ER64111

Resource Type:: Patent

Resource Relation:: Patent File Date: 2012 Aug 13

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES

Citation Formats


                    Bobzin, Steven Craig, Apuya, Nestor, Chiang, Karen, Doukhanina, Elena, Feldmann, Kenneth, Jankowski, Boris, Margolles-Clark, Emilio, Mumenthaler, Daniel, Okamuro, Jack, Park, Joon-Hyun, Van Fleet, Jennifer E., and Zhang, Ke. Modulating the level of components within plants.  United States: N. p., 2017. 
        Web.

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                    Bobzin, Steven Craig, Apuya, Nestor, Chiang, Karen, Doukhanina, Elena, Feldmann, Kenneth, Jankowski, Boris, Margolles-Clark, Emilio, Mumenthaler, Daniel, Okamuro, Jack, Park, Joon-Hyun, Van Fleet, Jennifer E., & Zhang, Ke. Modulating the level of components within plants.  United States.

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                    Bobzin, Steven Craig, Apuya, Nestor, Chiang, Karen, Doukhanina, Elena, Feldmann, Kenneth, Jankowski, Boris, Margolles-Clark, Emilio, Mumenthaler, Daniel, Okamuro, Jack, Park, Joon-Hyun, Van Fleet, Jennifer E., and Zhang, Ke. Tue .  
        "Modulating the level of components within plants".  United States.  https://www.osti.gov/servlets/purl/1390176.

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@article{osti_1390176,

  title        = {Modulating the level of components within plants},

  author       = {Bobzin, Steven Craig and Apuya, Nestor and Chiang, Karen and Doukhanina, Elena and Feldmann, Kenneth and Jankowski, Boris and Margolles-Clark, Emilio and Mumenthaler, Daniel and Okamuro, Jack and Park, Joon-Hyun and Van Fleet, Jennifer E. and Zhang, Ke},

  abstractNote = {Materials and Methods for identifying lignin regulatory region-regulatory protein associations are disclosed. Materials and methods for modulating lignin accumulation are also disclosed. In addition, methods and materials for modulating (e.g., increasing or decreasing) the level of a component (e.g., protein, oil, lignin, carbon, a carotenoid, or a triterpenoid) in plants are disclosed.},

  doi          = {},

  journal      = {},
number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Sep 12 00:00:00 EDT 2017},

  month        = {Tue Sep 12 00:00:00 EDT 2017}

}

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A monolithically interconnected photovoltaic module having cells which are electrically connected which comprises a substrate, a plurality of cells formed over the substrate, each cell including a primary absorber layer having a light receiving surface and a p-region, formed with a p-type dopant, and an n-region formed with an n-type dopant adjacent the p-region to form a single pn-junction, and a cell isolation diode layer having a p-region, formed with a p-type dopant, and an n-region formed with an n-type dopant adjacent the p-region to form a single pn-junction, the diode layer intervening the substrate and the absorber layer whereinmore » « less
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Printing transferable components using microstructured elastomeric surfaces with pressure modulated reversible adhesion

Patent Menard, Etienne; Rogers, John A.; Kim, Seok; ...

In a method of printing a transferable component, a stamp including an elastomeric post having three-dimensional relief features protruding from a surface thereof is pressed against a component on a donor substrate with a first pressure that is sufficient to mechanically deform the relief features and a region of the post between the relief features to contact the component over a first contact area. The stamp is retracted from the donor substrate such that the component is adhered to the stamp. The stamp including the component adhered thereto is pressed against a receiving substrate with a second pressure that ismore » « less
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Increasing plant growth by modulating omega-amidase expression in plants

Patent Unkefer, Pat J.; Anderson, Penelope S.; Knight, Thomas J.

The present disclosure relates to compositions and methods for increasing the leaf-to-root ratio of the signal metabolite 2-oxoglutaramate and related proline molecules in plants by modulating levels of .omega.-amidase to increase nitrogen use efficiency, resulting in enhanced growth, faster growth rates, greater seed and fruit/pod yields, earlier and more productive flowering, increased tolerance to high salt conditions, and increased biomass yields.
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Title: Modulating the level of components within plants

Abstract

Citation Formats

Single polypeptide chain binding molecules patent, August 1990

RNA ribozyme polymerases, dephosphorylases, restriction endoribonucleases and methods patent, January 1991

Genetic engineering of novel plant phenotypes patent, July 1991

Method and apparatus for introducing biological substances into living cells patent, April 1993

Genetic engineering of novel plant phenotypes patent, July 1993

Ribozymes patent, October 1993

Method for preparing fertile transgenic corn plants patent, July 1996

Caffeoyl-CoA 3-O-methyltransferase genes patent, March 1998

Modified green fluorescent proteins patent, July 1998

Phytase-protein-pigmenting concentrate derived from green plant juice patent, October 1998

Genetically engineered modification of potato to obtain amylopectin-type starch patent, October 1998

Animal feed compositions containing phytase derived from transgenic alfalfa and methods of use thereof patent, May 1999

Methods of optimizing substrate pools and biosynthesis of poly-.beta.-hydroxybutyrate-co-poly-.beta.-hydroxyvalerate in bacteria and plants patent, September 1999

Fertile transgenic corn plants patent, January 2000

Commercial production of proteases in plants patent, July 2000

Corn inbred lines for dairy cattle feed patent, September 2000

Vaccines expressed in plants patent, October 2000

Process for producing transgenic inulin-generating plants patent, July 2001

Anthranilate synthase gene and method of use thereof for conferring tryptophan overproduction patent, August 2001

Method for producing immunoglobulins containing protection proteins in plants and their use patent, October 2001

Method for altering the nutritional content of plant seed patent, December 2001

Method for transforming indica rice patent, December 2001

Transgenic plants expressing assembled secretory antibodies patent, July 2002

Methods for obtaining modified phenotypes in plant cells patent, July 2002

Modification of lignin content and composition in plants patent, August 2002

Methods to assay for post-transcriptional suppression of gene expression patent, September 2002

Genetic constructs for delaying or repressing the expression of a target gene patent, June 2003

Manipulation of lignin composition in plants using a tissue-specific promoter patent, August 2003

Gene silencing patent, June 2004

Methods and means for producing barley yellow dwarf virus resistant cereal plants patent, August 2004

4-coumarate co-enzyme a ligase promoter patent, December 2004

Compositions and methods for modulating plant development patent, June 2005

Biochemistry-related polynucleotides and polypeptides in plants patent, November 2006

Promoter, promoter control elements, and combinations, and uses thereof patent, February 2007

Promoter, promoter control elements, and combinations, and uses thereof patent, February 2007

Promoter, promoter control elements, and combinations, and uses thereof patent, May 2007

Regulatory regions from Papaveraceae patent, December 2007

Modulating plant carbon levels patent, February 2008

Promoter, promoter control elements, and combinations, and uses thereof patent, May 2008

Root active promoters and uses thereof patent, June 2008

Promoter, promoter control elements, and combinations, and uses thereof patent, July 2008

Sucrose synthase 3 promoter from rice and uses thereof patent, September 2008

Early light-induced protein promoters patent, October 2009

Promoter, promoter control elements, and combinations, and uses thereof patent, November 2010

Promoter, promoter control elements, and combinations, and uses thereof patent, December 2010

Phenylpropanoid related regulatory protein-regulatory region associations patent, January 2012

Modulating plant oil levels patent, July 2012

Shade regulatory regions patent, July 2012

Promoter, promoter control elements, and combinations, and uses thereof patent, October 2012

Modulating plant carbon levels patent, October 2012

Modulating lignin in plants patent, January 2013

Promoter, promoter control elements, and combinations, and uses thereof patent, March 2013

Methods and means for monitoring and modulating gene silencing patent-application, September 2003

Gene silencing patent-application, September 2003

Modified gene-silencing RNA and uses thereof patent-application, September 2003

Methods and means for obtaining modified phenotypes patent-application, October 2004

Cell cycle genes and related methods patent-application, January 2006

Promoter, promoter control elements, and combinations, and uses thereof patent-application, January 2006

P450 polynucleotides, polypeptides, and uses thereof patent-application, February 2006

Par-related protein promoters patent-application, November 2006

Promoter, promoter control elements, and combinations, and uses thereof patent-application, January 2007

Modulating Lignin in Plants patent-application, March 2010

Efficiency of Lignin Biosynthesis: a Quantitative Analysis journal, March 2003

Trends in lignin modification: a comprehensive analysis of the effects of genetic manipulations/mutations on lignification and vascular integrity journal, October 2002

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins journal, January 1999

Global Carbon Sinks and Their Variability Inferred from Atmospheric O2 and δ13C journal, March 2000

Lignin: Genetic Engineering and Impact on Pulping journal, January 2003

Adsorption of Clostridium thermocellum cellulases onto pretreated mixed hardwood, avicel, and lignin journal, September 1993

A Katanin-like Protein Regulates Normal Cell Wall gBiosynthesis and Cell Elongation journal, April 2001

Regulation of [beta]-Glucuronidase Expression in Transgenic Tobacco Plants by an A/T-Rich, cis-Acting Sequence Found Upstream of a French Bean [beta]-Phaseolin Gene journal, September 1989

Multiple sequence alignment with the Clustal series of programs journal, July 2003

Adsorption of high-purity endo-1,4-β-glucanases from Trichoderma reesei on components of lignocellulosic materials: Cellulose, lignin, and xylan journal, August 1988

Screening for Gene Regulation Mutants by Bioluminescence Imaging journal, July 2002

A cotyledon regulatory region is responsible for the different spatial expression patterns of Arabidopsis 2S albumin genes journal, April 1994

Isolation of Transcriptionally Regulated Root-Specific Genes from Tobacco journal, July 1990

RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease journal, January 2004

ProbCons: Probabilistic consistency-based multiple sequence alignment journal, January 2005

Single polypeptide chain binding molecules
patent, August 1990

RNA ribozyme polymerases, dephosphorylases, restriction endoribonucleases and methods
patent, January 1991

Genetic engineering of novel plant phenotypes
patent, July 1991

Method and apparatus for introducing biological substances into living cells
patent, April 1993

Genetic engineering of novel plant phenotypes
patent, July 1993

Ribozymes
patent, October 1993

Method for preparing fertile transgenic corn plants
patent, July 1996

Caffeoyl-CoA 3-O-methyltransferase genes
patent, March 1998

Modified green fluorescent proteins
patent, July 1998

Phytase-protein-pigmenting concentrate derived from green plant juice
patent, October 1998

Genetically engineered modification of potato to obtain amylopectin-type starch
patent, October 1998

Animal feed compositions containing phytase derived from transgenic alfalfa and methods of use thereof
patent, May 1999

Methods of optimizing substrate pools and biosynthesis of poly-.beta.-hydroxybutyrate-co-poly-.beta.-hydroxyvalerate in bacteria and plants
patent, September 1999

Fertile transgenic corn plants
patent, January 2000

Commercial production of proteases in plants
patent, July 2000

Corn inbred lines for dairy cattle feed
patent, September 2000

Vaccines expressed in plants
patent, October 2000

Process for producing transgenic inulin-generating plants
patent, July 2001

Anthranilate synthase gene and method of use thereof for conferring tryptophan overproduction
patent, August 2001

Method for producing immunoglobulins containing protection proteins in plants and their use
patent, October 2001

Method for altering the nutritional content of plant seed
patent, December 2001

Method for transforming indica rice
patent, December 2001

Transgenic plants expressing assembled secretory antibodies
patent, July 2002

Methods for obtaining modified phenotypes in plant cells
patent, July 2002

Modification of lignin content and composition in plants
patent, August 2002

Methods to assay for post-transcriptional suppression of gene expression
patent, September 2002

Genetic constructs for delaying or repressing the expression of a target gene
patent, June 2003

Manipulation of lignin composition in plants using a tissue-specific promoter
patent, August 2003

Gene silencing
patent, June 2004

Methods and means for producing barley yellow dwarf virus resistant cereal plants
patent, August 2004

4-coumarate co-enzyme a ligase promoter
patent, December 2004

Compositions and methods for modulating plant development
patent, June 2005

Biochemistry-related polynucleotides and polypeptides in plants
patent, November 2006

Promoter, promoter control elements, and combinations, and uses thereof
patent, February 2007

Promoter, promoter control elements, and combinations, and uses thereof
patent, February 2007

Promoter, promoter control elements, and combinations, and uses thereof
patent, May 2007

Regulatory regions from Papaveraceae
patent, December 2007

Modulating plant carbon levels
patent, February 2008

Promoter, promoter control elements, and combinations, and uses thereof
patent, May 2008

Root active promoters and uses thereof
patent, June 2008

Promoter, promoter control elements, and combinations, and uses thereof
patent, July 2008

Sucrose synthase 3 promoter from rice and uses thereof
patent, September 2008

Early light-induced protein promoters
patent, October 2009

Promoter, promoter control elements, and combinations, and uses thereof
patent, November 2010

Promoter, promoter control elements, and combinations, and uses thereof
patent, December 2010

Phenylpropanoid related regulatory protein-regulatory region associations
patent, January 2012

Modulating plant oil levels
patent, July 2012

Shade regulatory regions
patent, July 2012

Promoter, promoter control elements, and combinations, and uses thereof
patent, October 2012

Modulating plant carbon levels
patent, October 2012

Modulating lignin in plants
patent, January 2013

Promoter, promoter control elements, and combinations, and uses thereof
patent, March 2013

Methods and means for monitoring and modulating gene silencing
patent-application, September 2003

Gene silencing
patent-application, September 2003

Modified gene-silencing RNA and uses thereof
patent-application, September 2003

Methods and means for obtaining modified phenotypes
patent-application, October 2004

Cell cycle genes and related methods
patent-application, January 2006

Promoter, promoter control elements, and combinations, and uses thereof
patent-application, January 2006

P450 polynucleotides, polypeptides, and uses thereof
patent-application, February 2006

Par-related protein promoters
patent-application, November 2006

Promoter, promoter control elements, and combinations, and uses thereof
patent-application, January 2007

Modulating Lignin in Plants
patent-application, March 2010

Efficiency of Lignin Biosynthesis: a Quantitative Analysis
journal, March 2003

Trends in lignin modification: a comprehensive analysis of the effects of genetic manipulations/mutations on lignification and vascular integrity
journal, October 2002

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
journal, January 1999

Global Carbon Sinks and Their Variability Inferred from Atmospheric O₂ and δ¹³C
journal, March 2000

Lignin: Genetic Engineering and Impact on Pulping
journal, January 2003

Adsorption of Clostridium thermocellum cellulases onto pretreated mixed hardwood, avicel, and lignin
journal, September 1993

A Katanin-like Protein Regulates Normal Cell Wall gBiosynthesis and Cell Elongation
journal, April 2001

Regulation of [beta]-Glucuronidase Expression in Transgenic Tobacco Plants by an A/T-Rich, cis-Acting Sequence Found Upstream of a French Bean [beta]-Phaseolin Gene
journal, September 1989

Multiple sequence alignment with the Clustal series of programs
journal, July 2003

Adsorption of high-purity endo-1,4-β-glucanases from Trichoderma reesei on components of lignocellulosic materials: Cellulose, lignin, and xylan
journal, August 1988

Screening for Gene Regulation Mutants by Bioluminescence Imaging
journal, July 2002

A cotyledon regulatory region is responsible for the different spatial expression patterns of Arabidopsis 2S albumin genes
journal, April 1994

Isolation of Transcriptionally Regulated Root-Specific Genes from Tobacco
journal, July 1990

RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease
journal, January 2004

ProbCons: Probabilistic consistency-based multiple sequence alignment
journal, January 2005

Changes in secondary metabolism and deposition of an unusual lignin in the ref8 mutant of Arabidopsis
journal, April 2002

Modified lignin in tobacco and poplar plants over-expressing the Arabidopsis gene encoding ferulate 5-hydroxylase
journal, May 2000

The Arabidopsis REF8 gene encodes the 3-hydroxylase of phenylpropanoid metabolism
journal, April 2002