skip to main content
DOE Patents title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Methods, compounds and systems for detecting a microorganism in a sample

Abstract

Methods to identify a set of probe polynucleotides suitable for detecting a set of targets and in particular methods for identification of primers suitable for detection of target microorganisms related polynucleotides, set of polynucleotides and compositions, and related methods and systems for detection and/or identification of microorganisms in a sample.

Inventors:
; ; ; ;
Issue Date:
Research Org.:
Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1321910
Patent Number(s):
9434997
Application Number:
12/196,238
Assignee:
Lawrence Livermore National Security, LLC (Livermore, CA)
Patent Classifications (CPCs):
C - CHEMISTRY C12 - BIOCHEMISTRY C12Q - MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
DOE Contract Number:  
AC52-07NA27344
Resource Type:
Patent
Resource Relation:
Patent File Date: 2008 Aug 21
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Colston, Jr, Bill W., Fitch, J. Patrick, Gardner, Shea N., Williams, Peter L., and Wagner, Mark C. Methods, compounds and systems for detecting a microorganism in a sample. United States: N. p., 2016. Web.
Colston, Jr, Bill W., Fitch, J. Patrick, Gardner, Shea N., Williams, Peter L., & Wagner, Mark C. Methods, compounds and systems for detecting a microorganism in a sample. United States.
Colston, Jr, Bill W., Fitch, J. Patrick, Gardner, Shea N., Williams, Peter L., and Wagner, Mark C. Tue . "Methods, compounds and systems for detecting a microorganism in a sample". United States. https://www.osti.gov/servlets/purl/1321910.
@article{osti_1321910,
title = {Methods, compounds and systems for detecting a microorganism in a sample},
author = {Colston, Jr, Bill W. and Fitch, J. Patrick and Gardner, Shea N. and Williams, Peter L. and Wagner, Mark C.},
abstractNote = {Methods to identify a set of probe polynucleotides suitable for detecting a set of targets and in particular methods for identification of primers suitable for detection of target microorganisms related polynucleotides, set of polynucleotides and compositions, and related methods and systems for detection and/or identification of microorganisms in a sample.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2016},
month = {9}
}

Patent:

Save / Share:

Works referenced in this record:

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
journal, September 1997


The elimination of primer-dimer accumulation in PCR
journal, August 1997


Fast and sensitive quantitative detection of HIV DNA in whole blood leucocytes by SYBR green I real-time PCR assay
journal, October 2007


Multiple sequence alignment with the Clustal series of programs
journal, July 2003


The Ibis T5000 Universal Biosensor: An Automated Platform for Pathogen Identification and Strain Typing
journal, December 2006


Profile hidden Markov models
journal, October 1998


MUSCLE: multiple sequence alignment with high accuracy and high throughput
journal, March 2004


Viral metagenomics
journal, May 2005


SYBR Green real-time reverse transcription-polymerase chain reaction assay for the generic detection of coronaviruses
journal, August 2006


Primaclade--a flexible tool to find conserved PCR primers across multiple species
journal, November 2004


Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments
journal, November 2006


Pan‐Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity
journal, September 2007


Using a Resequencing Microarray as a Multiple Respiratory Pathogen Detection Assay
journal, November 2006


The degenerate primer design problem
journal, July 2002


Genome sequencing in microfabricated high-density picolitre reactors
journal, July 2005


DINAMelt web server for nucleic acid melting prediction
journal, July 2005


Universal virus detection by degenerate-oligonucleotide primed polymerase chain reaction of purified viral nucleic acids
journal, September 2008


Quantitative multiplex degenerate PCR for human endogenous retrovirus expression profiling
journal, December 2006


Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray
journal, June 2007


MuPlex: multi-objective multiplex PCR assay design
journal, July 2005


Rapid Identification of Emerging Infectious Agents Using PCR and Electrospray Ionization Mass Spectrometry
journal, April 2007


A simplified procedure for developing multiplex PCRs.
journal, December 1995


Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens
journal, May 2007


Microarray-based detection and genotyping of viral pathogens
journal, November 2002


Viral Discovery and Sequence Recovery Using DNA Microarrays
journal, November 2003


Real-Time PCR Assay for Detection and Quantification of Hepatitis B Virus Genotypes A to G
journal, September 2006