Devices, systems, and methods for conducting assays with improved sensitivity using sedimentation
Abstract
Embodiments of the present invention are directed toward devices, systems, and method for conducting assays using sedimentation. In one example, a method includes layering a mixture on a density medium, subjecting sedimentation particles in the mixture to sedimentation forces to cause the sedimentation particles to move to a detection area through a density medium, and detecting a target analyte in a detection region of the sedimentation channel. In some examples, the sedimentation particles and labeling agent may have like charges to reduce non-specific binding of labeling agent and sedimentation particles. In some examples, the density medium is provided with a separation layer for stabilizing the assay during storage and operation. In some examples, the sedimentation channel may be provided with a generally flat sedimentation chamber for dispersing the particle pellet over a larger surface area.
- Inventors:
- Issue Date:
- Research Org.:
- Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1171088
- Patent Number(s):
- 8962346
- Application Number:
- 13/423,050
- Assignee:
- Sandia Corporation (Albuquerque, NM)
- Patent Classifications (CPCs):
-
G - PHYSICS G01 - MEASURING G01N - INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
B - PERFORMING OPERATIONS B01 - PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL B01L - CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- DOE Contract Number:
- AC04-94AL85000
- Resource Type:
- Patent
- Resource Relation:
- Patent File Date: 2012 Mar 16
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 42 ENGINEERING
Citation Formats
Schaff, Ulrich Y, Koh, Chung-Yan, and Sommer, Gregory J. Devices, systems, and methods for conducting assays with improved sensitivity using sedimentation. United States: N. p., 2015.
Web.
Schaff, Ulrich Y, Koh, Chung-Yan, & Sommer, Gregory J. Devices, systems, and methods for conducting assays with improved sensitivity using sedimentation. United States.
Schaff, Ulrich Y, Koh, Chung-Yan, and Sommer, Gregory J. Tue .
"Devices, systems, and methods for conducting assays with improved sensitivity using sedimentation". United States. https://www.osti.gov/servlets/purl/1171088.
@article{osti_1171088,
title = {Devices, systems, and methods for conducting assays with improved sensitivity using sedimentation},
author = {Schaff, Ulrich Y and Koh, Chung-Yan and Sommer, Gregory J},
abstractNote = {Embodiments of the present invention are directed toward devices, systems, and method for conducting assays using sedimentation. In one example, a method includes layering a mixture on a density medium, subjecting sedimentation particles in the mixture to sedimentation forces to cause the sedimentation particles to move to a detection area through a density medium, and detecting a target analyte in a detection region of the sedimentation channel. In some examples, the sedimentation particles and labeling agent may have like charges to reduce non-specific binding of labeling agent and sedimentation particles. In some examples, the density medium is provided with a separation layer for stabilizing the assay during storage and operation. In some examples, the sedimentation channel may be provided with a generally flat sedimentation chamber for dispersing the particle pellet over a larger surface area.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2015},
month = {2}
}
Works referenced in this record:
A molecular approach to bioseparations: Protein–protein and protein–salt interactions
journal, February 2006
- Curtis, R. A.; Lue, L.
- Chemical Engineering Science, Vol. 61, Issue 3, p. 907-923
Infrared controlled waxes for liquid handling and storage on a CD-microfluidic platform
journal, January 2011
- Abi-Samra, Kameel; Hanson, Ryan; Madou, Marc
- Lab on a Chip, Vol. 11, Issue 4, p. 723-726
How Hofmeister ion interactions affect protein stability
journal, October 1996
- Baldwin, R. L.
- Biophysical Journal, Vol. 71, Issue 4, p. 2056-2063
Cell-Free DNA—A Marker to Predict Ischemic Brain Damage in a Rat Stroke Experimental Model
journal, January 2011
- Boyko, Matthew; Ohayon, Sharon; Goldsmith, Tomer
- Journal of Neurosurgical Anesthesiology, Vol. 23, Issue 3, p. 222-228
Measurement of Circulating Cell-Free DNA Levels by a New Simple Fluorescent Test in Patients With Primary Colorectal Cancer
journal, February 2011
- Czeiger, David; Shaked, Gad; Eini, Hadar
- American Journal of Clinical Pathology, Vol. 135, Issue 2, p. 264-270
A rapid direct fluorescent assay for cell-free DNA quantification in biological fluids
journal, September 2009
- Goldshtein, H.; Hausmann, M. J; Douvdevani, A.
- Annals of Clinical Biochemistry, Vol. 46, Issue 6, p. 488-494
Leukocyte analysis and differentiation using high speed microfluidic single cell impedance cytometry
journal, January 2009
- Holmes, David; Pettigrew, David; Reccius, Christian H.
- Lab on a Chip, Vol. 9, Issue 20, p. 2881-2889
A fully automated immunoassay from whole blood on a disc
journal, January 2009
- Lee, Beom Seok; Lee, Jung-Nam; Park, Jong-Myeon
- Lab on a Chip, Vol. 9, Issue 11, p. 1548-1555
Bead-based microfluidic immunoassays: The next generation
journal, February 2007
- Lim, C. T.; Zhang, Y.
- Biosensors and Bioelectronics, Vol. 22, Issue 7, p. 1197-1204
Lab On A CD
journal, August 2006
- Madou, Marc; Zoval, Jim; Jia, Guangyao
- Annual Review of Biomedical Engineering, Vol. 8, Issue 1, p. 601-628
Comparison of sample fixation and the use of LDS-751 or anti-CD45 for leukocyte identification in mouse whole blood for flow cytometry
journal, January 2007
- Maes, Melissa L.; Davidson, Lisa B.; McDonagh, Paul F.
- Journal of Immunological Methods, Vol. 319, Issue 1-2, p. 79-86
Functional integration of DNA purification and concentration into a real time micro-PCR chip
journal, January 2011
- Min, Junhong; Kim, Joon-Ho; Lee, Youngsun
- Lab on a Chip, Vol. 11, Issue 2, p. 259-265
Plasma DNA concentration as a predictor of mortality and sepsis in critically ill patients
journal, April 2006
- Rhodes, Andrew; Wort, Stephen J.; Thomas, Helen
- Critical Care, Vol. 10, Issue 2, Article No. R60
A B Cell-Based Sensor for Rapid Identification of Pathogens
journal, July 2003
- Rider, Todd H.; Petrovick, Martha S.; Nargi, Frances E.
- Science, Vol. 301, Issue 5630, p. 213-215
Read-out concepts for multiplexed bead-based fluorescence immunoassays on centrifugal microfluidic platforms
journal, February 2006
- Riegger, L.; Grumann, M.; Nann, T.
- Sensors and Actuators A: Physical, Vol. 126, Issue 2, p. 455-462
Whole Blood Immunoassay Based on Centrifugal Bead Sedimentation
journal, March 2011
- Schaff, U. Y.; Sommer, G. J.
- Clinical Chemistry, Vol. 57, Issue 5, p. 753-761
A new biodosimetric method: branched DNA-based quantitative detection of B1 DNA in mouse plasma
journal, August 2010
- Zhang, L.; Zhang, M.; Yang, S.
- The British Journal of Radiology, Vol. 83, Issue 992, p. 694-701
Circulating DNA: a new diagnostic gold mine?
journal, October 2002
- Ziegler, Annemarie; Zangemeister-Wittke, Uwe; Stahel, Rolf A.
- Cancer Treatment Reviews, Vol. 28, Issue 5, p. 255-271
Staphylococcal Enterotoxin B as a Biological Weapon: Recognition, Management, and Surveillance of Staphylococcal Enterotoxin
journal, September 2006
- Ahanotu, Ejem; Alvelo-Ceron, Damaris; Ravita, Timothy
- Applied Biosafety, Vol. 11, Issue 3, p. 120-126
Ricin A-Chain Activity on Stem−Loop and Unstructured DNA Substrates
journal, March 2005
- Amukele, Tim K.; Roday, Setu; Schramm, Vern L.
- Biochemistry, Vol. 44, Issue 11, p. 4416-4425
Parallel Nanoliter Microfluidic Analysis System
journal, June 2007
- Andersson, Per; Jesson, Gerald; Kylberg, Gunnar
- Analytical Chemistry, Vol. 79, Issue 11, p. 4022-4030
One-step purification of nucleic acid for gene expression analysis via Immiscible Filtration Assisted by Surface Tension (IFAST)
journal, January 2011
- Berry, Scott M.; Alarid, Elaine T.; Beebe, David J.
- Lab on a Chip, Vol. 11, Issue 10, p. 1747-1753
Shiga toxin 1 acting on DNA in vitro is a heat-stable enzyme not requiring proteolytic activation
journal, April 2004
- Brigotti, Maurizio; Carnicelli, Domenica; Vara, Antonio González
- Biochimie, Vol. 86, Issue 4-5, p. 305-309
Centrifugal microfluidics for biomedical applications
journal, January 2010
- Gorkin, Robert; Park, Jiwoon; Siegrist, Jonathan
- Lab on a Chip, Vol. 10, Issue 14, p. 1758-1773
Depurination of A4256 in 28 S rRNA by the Ribosome-inactivating Proteins from Barley and Ricin Results in Different Ribosome Conformations
journal, May 1996
- Holmberg, Lovisa; Nygård, Odd
- Journal of Molecular Biology, Vol. 259, Issue 1, p. 81-94
Fully integrated lab-on-a-disc for simultaneous analysis of biochemistry and immunoassay from whole blood
journal, January 2011
- Lee, Beom Seok; Lee, Yang Ui; Kim, Han-Sang
- Lab on a Chip, Vol. 11, Issue 1, p. 70-78
Cell-Free Plasma DNA as a Predictor of Outcome in Severe Sepsis and Septic Shock
journal, April 2008
- Saukkonen, K.; Lakkisto, P.; Pettila, V.
- Clinical Chemistry, Vol. 54, Issue 6, p. 1000-1007
Characterization of EBV-genome negative “null” and “T” cell lines derived from children with acute lymphoblastic leukemia and leukemic transformed non-Hodgkin lymphoma
journal, May 1977
- Schneider, Ulrich; Schwenk, Hans-Ulrich; Bornkamm, Georg
- International Journal of Cancer, Vol. 19, Issue 5, p. 621-626
Bioinformatic processing to identify single nucleotide polymorphism that potentially affect Ape1 function
journal, June 2011
- Yu, Eizadora T.; Hadi, Masood Z.
- Mutation Research/Genetic Toxicology and Environmental Mutagenesis, Vol. 722, Issue 2, p. 140-146
Micro freef-low IEF enhanced by active cooling and functionalized gels
journal, December 2006
- Albrecht, Jacob W.; Jensen, Klavs F.
- ELECTROPHORESIS, Vol. 27, Issue 24, p. 4960-4969
Formation of Natural pH Gradients in a Microfluidic Device under Flow Conditions: Model and Experimental Validation
journal, February 2001
- Cabrera, Catherine R.; Finlayson, Bruce; Yager, Paul
- Analytical Chemistry, Vol. 73, Issue 3, p. 658-666
Multistage Isoelectric Focusing in a Polymeric Microfluidic Chip
journal, December 2005
- Cui, Huanchun; Horiuchi, Keisuke; Dutta, Prashanta
- Analytical Chemistry, Vol. 77, Issue 24, p. 7878-7886
Effects of separation length and voltage on isoelectric focusing in a plastic microfluidic device
journal, September 2006
- Das, Champak; Fan, Z. Hugh
- ELECTROPHORESIS, Vol. 27, Issue 18, p. 3619-3626
Detecting Single Stranded DNA with a Solid State Nanopore
journal, October 2005
- Fologea, Daniel; Gershow, Marc; Ledden, Bradley
- Nano Letters, Vol. 5, Issue 10, p. 1905-1909
Recent developments in two-dimensional gel electrophoresis with immobilized pH gradients: Wide pH gradients up to pH 12, longer separation distances and simplified procedures
journal, January 1999
- Görg, Angelika; Obermaier, Christian; Boguth, Günther
- Electrophoresis, Vol. 20, Issue 4-5, p. 712-717
The current state of two-dimensional electrophoresis with immobilized pH gradients
journal, April 2000
- Görg, Angelika; Obermaier, Christian; Boguth, Günther
- Electrophoresis, Vol. 21, Issue 6, p. 1037-1053
Integrated Preconcentration SDS−PAGE of Proteins in Microchips Using Photopatterned Cross-Linked Polyacrylamide Gels
journal, July 2006
- Hatch, Anson V.; Herr, Amy E.; Throckmorton, Daniel J.
- Analytical Chemistry, Vol. 78, Issue 14, p. 4976-4984
Microfluidic immunoassays as rapid saliva-based clinical diagnostics
journal, March 2007
- Herr, A. E.; Hatch, A. V.; Throckmorton, D. J.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 13, p. 5268-5273
On-Chip Coupling of Isoelectric Focusing and Free Solution Electrophoresis for Multidimensional Separations
journal, March 2003
- Herr, Amy E.; Molho, Joshua I.; Drouvalakis, Katerina A.
- Analytical Chemistry, Vol. 75, Issue 5, p. 1180-1187
Microfabrication of a tapered channel for isoelectric focusing with thermally generated pH gradient
journal, October 2002
- Huang, Tiemin; Pawliszyn, Janusz
- ELECTROPHORESIS, Vol. 23, Issue 20, p. 3504-3510
Rapid isoelectric trapping in a micropreparative-scale multicompartment electrolyzer
journal, June 2007
- Lim, Peniel; North, Robert; Vigh, Gyula
- ELECTROPHORESIS, Vol. 28, Issue 12, p. 1851-1859
Photopolymerized diffusion-defined polyacrylamide gradient gels for on-chip protein sizing
journal, January 2008
- Lo, Catherine T.; Throckmorton, Daniel J.; Singh, Anup K.
- Lab on a Chip, Vol. 8, Issue 8, p. 1273-1279
Integration of nanoporous membranes for sample filtration/preconcentration in microchip electrophoresis
journal, December 2006
- Long, Zhicheng; Liu, Dayu; Ye, Nannan
- ELECTROPHORESIS, Vol. 27, Issue 24, p. 4927-4934
Preparative-scale isoelectric trapping separations using a modified Gradiflow unit
journal, December 2002
- Ogle, David; Ho, Agnes; Gibson, Toby
- Journal of Chromatography A, Vol. 979, Issue 1-2, p. 155-161
The Alpher, Bethe and Gamow of IEF, the alpha-Centaury of electrokinetic methodologies. Part II: Immobilized pH gradients
journal, February 2007
- Righetti, Pier Giorgio
- ELECTROPHORESIS, Vol. 28, Issue 4, p. 545-555
The Alpher, Bethe, Gamow of isoelectric focusing, the alpha-Centaury of electrokinetic methodologies. Part I
journal, March 2006
- Righetti, Pier Giorgio
- ELECTROPHORESIS, Vol. 27, Issue 5-6, p. 923-938
Design Optimization of Spirally Grooved Thrust Air Bearings for Polygon Mirror Laser Scanners
journal, January 1993
- Satomi, Tadaatsu; Lin, Gang
- JSME international journal. Ser. C, Dynamics, control, robotics, design and manufacturing, Vol. 36, Issue 3
On-Chip Isoelectric Focusing Using Photopolymerized Immobilized pH Gradients
journal, May 2008
- Sommer, Greg J.; Singh, Anup K.; Hatch, Anson V.
- Analytical Chemistry, Vol. 80, Issue 9, p. 3327-3333
Miniaturized capillary isoelectric focusing in plastic microfluidic devices
journal, October 2002
- Tan, Woei; Fan, Z. Hugh; Qiu, Charmaine X.
- ELECTROPHORESIS, Vol. 23, Issue 20, p. 3638-3645
Parallel isoelectric focusing chip
journal, September 2004
- Zilberstein, Gleb; Korol, Leonid; Bukshpan, Shmuel
- PROTEOMICS, Vol. 4, Issue 9, p. 2533-2540
Parallel isoelectric focusing II
journal, November 2004
- Zilberstein, Gleb V.; Baskin, Emmanuil M.; Bukshpan, Shmuel
- ELECTROPHORESIS, Vol. 25, Issue 21-22, p. 3643-3651
Parallel processing in the isoelectric focusing chip
journal, November 2003
- Zilberstein, Gleb V.; Baskin, Emmanuil M.; Bukshpan, Shmuel
- ELECTROPHORESIS, Vol. 24, Issue 21, p. 3735-3744
A Method for Global Analysis of Complex Proteomes Using Sample Prefractionation by Solution Isoelectrofocusing Prior to Two-Dimensional Electrophoresis
journal, September 2000
- Zuo, Xun; Speicher, David W.
- Analytical Biochemistry, Vol. 284, Issue 2