Array for detecting microbes

Andersen, Gary L.; DeSantis, Todd D.

Advanced Search OptionsAdvanced Search queries use a traditional Term Search. For more info, see our FAQ.

All Fields:

Patent Title:

Abstract:

Assignee:

Inventor(s):

Patent Number:

Patent Classification (CPC):

All Classifications
A - human necessities
A01 - agriculture
A21 - baking
A22 - butchering
A23 - foods or foodstuffs
A24 - tobacco
A41 - wearing apparel
A42 - headwear
A43 - footwear
A44 - haberdashery
A45 - hand or travelling articles
A46 - brushware
A47 - furniture
A61 - medical or veterinary science
A62 - life-saving
A63 - sports
A99 - subject matter not otherwise provided for in this section
B - performing operations
B01 - physical or chemical processes or apparatus in general
B02 - crushing, pulverising, or disintegrating
B03 - separation of solid materials using liquids or using pneumatic tables or jigs
B04 - centrifugal apparatus or machines for carrying-out physical or chemical processes
B05 - spraying or atomising in general
B06 - generating or transmitting mechanical vibrations in general
B07 - separating solids from solids
B08 - cleaning
B09 - disposal of solid waste
B21 - mechanical metal-working without essentially removing material
B22 - casting
B23 - machine tools
B24 - grinding
B25 - hand tools
B26 - hand cutting tools
B27 - working or preserving wood or similar material
B28 - working cement, clay, or stone
B29 - working of plastics
B30 - presses
B31 - making articles of paper, cardboard or material worked in a manner analogous to paper
B32 - layered products
B33 - additive manufacturing technology
B41 - printing
B42 - bookbinding
B43 - writing or drawing implements
B44 - decorative arts
B60 - vehicles in general
B61 - railways
B62 - land vehicles for travelling otherwise than on rails
B63 - ships or other waterborne vessels
B64 - aircraft
B65 - conveying
B66 - hoisting
B67 - opening, closing {or cleaning} bottles, jars or similar containers
B68 - saddlery
B81 - microstructural technology
B82 - nanotechnology
B99 - subject matter not otherwise provided for in this section
C - chemistry
C01 - inorganic chemistry
C02 - treatment of water, waste water, sewage, or sludge
C03 - glass
C04 - cements
C05 - fertilisers
C06 - explosives
C07 - organic chemistry
C08 - organic macromolecular compounds
C09 - dyes
C10 - petroleum, gas or coke industries
C11 - animal or vegetable oils, fats, fatty substances or waxes
C12 - biochemistry
C13 - sugar industry
C14 - skins
C21 - metallurgy of iron
C22 - metallurgy
C23 - coating metallic material
C25 - electrolytic or electrophoretic processes
C30 - crystal growth
C40 - combinatorial technology
C99 - subject matter not otherwise provided for in this section
D - textiles
D01 - natural or man-made threads or fibres
D02 - yarns
D03 - weaving
D04 - braiding
D05 - sewing
D06 - treatment of textiles or the like
D07 - ropes
D10 - indexing scheme associated with sublasses of section d, relating to textiles
D21 - paper-making
D99 - subject matter not otherwise provided for in this section
E - fixed constructions
E01 - construction of roads, railways, or bridges
E02 - hydraulic engineering
E03 - water supply
E04 - building
E05 - locks
E06 - doors, windows, shutters, or roller blinds in general
E21 - earth drilling
E99 - subject matter not otherwise provided for in this section
F - mechanical engineering
F01 - machines or engines in general
F02 - combustion engines
F03 - machines or engines for liquids
F04 - positive - displacement machines for liquids
F05 - indexing schemes relating to engines or pumps in various subclasses of classes f01-f04
F15 - fluid-pressure actuators
F16 - engineering elements and units
F17 - storing or distributing gases or liquids
F21 - lighting
F22 - steam generation
F23 - combustion apparatus
F24 - heating
F25 - refrigeration or cooling
F26 - drying
F27 - furnaces
F28 - heat exchange in general
F41 - weapons
F42 - ammunition
F99 - subject matter not otherwise provided for in this section
G - physics
G01 - measuring
G02 - optics
G03 - photography
G04 - horology
G05 - controlling
G06 - computing
G07 - checking-devices
G08 - signalling
G09 - education
G10 - musical instruments
G11 - information storage
G12 - instrument details
G16 - information and communication technology [ict] specially adapted for specific application fields
G21 - nuclear physics
G99 - subject matter not otherwise provided for in this section
H - electricity
H01 - basic electric elements
H02 - generation
H03 - basic electronic circuitry
H04 - electric communication technique
H05 - electric techniques not otherwise provided for
H99 - subject matter not otherwise provided for in this section
Y - new / cross sectional technologies
Y02 - technologies or applications for mitigation or adaptation against climate change
Y04 - information or communication technologies having an impact on other technology areas
Y10 - technical subjects covered by former uspc

More Options ...

Title: Array for detecting microbes

Abstract

The present embodiments relate to an array system for detecting and identifying biomolecules and organisms. More specifically, the present embodiments relate to an array system comprising a microarray configured to simultaneously detect a plurality of organisms in a sample at a high confidence level.

Inventors:: Andersen, Gary L.; DeSantis, Todd D.

Issue Date:: 2014-07-08

Research Org.:: University of California, Oakland, CA (USA).

Sponsoring Org.:: USDOE

OSTI Identifier:: 1140129

Patent Number(s):: 8771940

Application Number:: 12/474,204

Assignee:: The Regents of the University of California (Oakland, CA)

Patent Classifications (CPCs):: C - CHEMISTRY C12 - BIOCHEMISTRY C12Q - MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS

G - PHYSICS G16 - INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS G16B - BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY

Show more

C - CHEMISTRY C12 - BIOCHEMISTRY C12Q - MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
C12Q1/6837 - using probe arrays or probe chips
C12Q1/689 - for bacteria

G - PHYSICS G16 - INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS G16B - BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
G16B25/00 - ICT specially adapted for hybridisation

Show less

DOE Contract Number:: AC03-76SF00098

Resource Type:: Patent

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES

Citation Formats


                    Andersen, Gary L., and DeSantis, Todd D. Array for detecting microbes.  United States: N. p., 2014. 
        Web.

Copy to clipboard


                    Andersen, Gary L., & DeSantis, Todd D. Array for detecting microbes.  United States.

Copy to clipboard


                    Andersen, Gary L., and DeSantis, Todd D. Tue .  
        "Array for detecting microbes".  United States.  https://www.osti.gov/servlets/purl/1140129.

Copy to clipboard


                    
@article{osti_1140129,

  title        = {Array for detecting microbes},

  author       = {Andersen, Gary L. and DeSantis, Todd D.},

  abstractNote = {The present embodiments relate to an array system for detecting and identifying biomolecules and organisms. More specifically, the present embodiments relate to an array system comprising a microarray configured to simultaneously detect a plurality of organisms in a sample at a high confidence level.},

  doi          = {},

  journal      = {},
number       = ,

  volume       = ,

  place        = {United States},

  year         = {2014},

  month        = {7}

}

Copy to clipboard

Patent:

Save / Share:

Export Metadata

Save to My Library

Works referenced in this record:

Degradation of environmental toxins by a filamentous bacterium
patent, February 1999

Bielefeldt, Angela R.; Stensel, H. David; Strand, Stuart E.
US Patent Document 5,874,291
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/5874291

Arrays of modified nucleic acid probes and methods of use
patent, December 2000

McGall, Glenn; Miyada, Charles; Cronin, Maureen T.
US Patent Document 6,156,501
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/6156501

Chip-based species identification and phenotypic characterization of microorganisms
patent, May 2001

Gingeras, Thomas; Mack, David; Chee, Mark S.
US Patent Document 6,228,575
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/6228575

Nucleic acid arrays
patent, July 2001

Pirrung, Michael C.; Read, J. Leighton; Fodor, Stephen P. A.
US Patent Document 6,261,776
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/6261776

Arrays of nucleic acid probes for analyzing biotransformation genes and methods of using the same
patent, October 2001

Cronin, Maureen T.; Miyada, Charles; Hubbell, Earl
US Patent Document 6,309,823
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/6309823

Computer-aided visualization and analysis system for sequence evaluation
patent, August 2003

Chee, Mark S.
US Patent Document 6,607,887
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/6607887

Microarray method of genotyping multiple samples at multiple LOCI
patent, July 2005

Schena, Mark A.
US Patent Document 6,913,879
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/6913879

Mycobacterial rpoB sequences
patent, September 2006

Gingeras, Thomas; Drenkow, Jorg
US Patent Document 7,108,968
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/7108968

Arrays of nucleic acid probes on biological chips
patent, October 2006

Chee, Mark S.; Cronin, Maureen T.; Fodor, Stephen P. A.
US Patent Document 7,115,364
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/7115364

Nucleic acid arrays to monitor water and other ecosystems
patent, May 2007

Rublee, Parke A.; Henrich, III, Vincent C.
US Patent Document 7,214,492
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/7214492

System and method for detecting a biological entity in a water sample
patent, November 2008

Schaudies, R. Paul; Robinson, Doreen A.
US Patent Document 7,455,966
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/7455966

Oligonucleotides
patent-application, December 2001

Fodor, Stephen P. A.; Solas, Dennis W.; Dower, William J.
US Patent Application 09/519090; 20010053519
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20010053519

Genomic Profiling: A Rapid Method for Testing a Complex Biological Sample for the Presence of Many Types of Organisms
patent-application, July 2002

Straus, Don
US Patent Application 09/333110; 20020086289
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20020086289

Microbial identification chip based on DNA-DNA hybridization
patent-application, December 2002

Tiedje, James; Cho, Jae-Chang
US Patent Application 10/073464; 20020187490
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20020187490

Methods for the survey and genetic analysis of populations
patent-application, June 2004

Ashby, Matthew
US Patent Application 10/607077; 20040110183
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20040110183

Method of preparing reaction regions for biochips
patent-application, August 2005

Ho, Chih-Wei; Liao, Wen-Yeh; Wu, Chien-Tsung
US Patent Application 10/769960; 20050170361
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20050170361

Enhanced sequencing by hybridization using pools of probes
patent-application, September 2005

Drmanac, Radoje; Drmanac, Snezana; Kita, David
US Patent Application 10/987549; 20050191656
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20050191656

Genus, group, species and/or strain specific 16S rDNA sequences
patent-application, March 2006

Zeng, Qiandong; Chatellier, Sonia; Moir, Donald T.
US Patent Application 10/831286; 20060046246
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20060046246

Method of designing probe set, microarray having substrate on which probe designed by the method is immobilized, and computer readable medium on which program for executing the method is recorded
patent-application, March 2006

Kwon, Tae-joon
US Patent Application 11/226082; 20060058967
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20060058967

Probe design methods and microarrays for comparative genomic hybridization and location analysis
patent-application, May 2006

Sampas, Nicolas M.; Curry, Bo; Tsang, Peter
US Patent Application 10/996323; 20060110744
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20060110744

Methods and Arrays for Identifying Human Microflora
patent-application, November 2007

Dewhirst, Floyd E.; Paster, Bruce Jay; Boches, Susan K.
US Patent Application 11/556296; 20070269813
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20070269813

Method of Designing Probes for Detecting Target Sequence and Method of Detecting Target Sequence Using the Probes
patent-application, June 2008

Ahn, Tae-jin; Oh, Ji-young; Lee, Jung-nam
US Patent Application 11/739354; 20080139398
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20080139398

Microfluidic Analysis System
patent-application, November 2008

Davies, Mark; Dalton, Tara
US Patent Application 12/093132; 20080280331
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20080280331

Clustering Phylogenetic Variation Patterns
patent-application, January 2009

Ozer, Stuart
US Patent Application 11/781920; 20090030925
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20090030925

DNA Fragments Array from Biomining Microorganisms and Method for Detection of Them
patent-application, February 2009

Badillaohlbaum, Ricardo; Maass Sepulveda, Alejandro; Parada Valdecantos, Pilar
US Patent Application 11/601516; 20090054249
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20090054249

Identification of Pathogens
patent-application, November 2009

Wiesinger-Mayr, Herbert; Pichler, Rudolf; Bodrossy, Levente
US Patent Application 12/307524; 20090291854
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20090291854

Molecular Diagnosis of Bacteremia
patent-application, January 2011

Rothman, Richard E.; Majmudar, Maulik D.
US Patent Application 12/849474; 20110008791
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20110008791

Probes and Methods for Detection of Pathogens and Antibiotic Resistance
patent-application, February 2001

Haake, David A.; Churchil, Bernard M.; Liao, Jospeh C.
US Patent Application 12/788101: 20110027782
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20110027782

Categorization of Microbial Communities
patent-application, March 2011

Forney, Larry J.; Foster, James; Brown, Celeste
US Patent Application 12/793266; 20110053802
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/20110053802

Bacterial Species Determination from DNA-DNA Hybridization by Using Genome Fragments and DNA Microarrays
journal, August 2001

Cho, J. -C.; Tiedje, J. M.
Applied and Environmental Microbiology, Vol. 67, Issue 8
https://doi.org/10.1128/AEM.67.8.3677-3682.2001

Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays
journal, May 1998

Gingeras, Thomas R.; Ghandour, Ghassan; Wang, Eugene
Genome Research, Vol. 8, Issue 5
https://doi.org/10.1101/gr.8.5.435

Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging: 16S rRNA hybridization using SPRi
journal, November 2002

Nelson, Bryce P.; Liles, Mark R.; Frederick, Kendra B.
Environmental Microbiology, Vol. 4, Issue 11
https://doi.org/10.1046/j.1462-2920.2002.00350.x

Prokaryotic Diversity--Magnitude, Dynamics, and Controlling Factors
journal, May 2002

Torsvik, V.
Science, Vol. 296, Issue 5570
https://doi.org/10.1126/science.1071698

Real time quantitative PCR.
journal, October 1996

Heid, C. A.; Stevens, J.; Livak, K. J.
Genome Research, Vol. 6, Issue 10, p. 986-994
https://doi.org/10.1101/gr.6.10.986

Group testing with DNA chips: generating designs and decoding experiments
conference, January 2003

Schliep, A.; Torney, D. C.; Rahmann, S.
Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003
https://doi.org/10.1109/CSB.2003.1227307

A fast and flexible approach to oligonucleotide probe design for genomes and gene families
journal, March 2007

Feng, S.; Tillier, E. R. M.
Bioinformatics, Vol. 23, Issue 10
https://doi.org/10.1093/bioinformatics/btm114

Accurate method for fast design of diagnostic oligonucleotide probe sets for DNA microarrays
conference, January 2003

Krause, A.; Krautner, M.; Meier, H.
International Parallel and Distributed Processing Symposium (IPDPS 2003), Proceedings International Parallel and Distributed Processing Symposium
https://doi.org/10.1109/IPDPS.2003.1213289

Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree
journal, July 2006

Schliep, A.; Rahmann, S.
Bioinformatics, Vol. 22, Issue 14
https://doi.org/10.1093/bioinformatics/btl254

A DNA Microarray Platform Based on Direct Detection of rRNA for Characterization of Freshwater Sediment-Related Prokaryotic Communities
journal, July 2006

Peplies, J.; Lachmund, C.; Glockner, F. O.
Applied and Environmental Microbiology, Vol. 72, Issue 7
https://doi.org/10.1128/AEM.02949-05

The Isotope Array, a New Tool That Employs Substrate-Mediated Labeling of rRNA for Determination of Microbial Community Structure and Function
journal, November 2003

Adamczyk, J.; Hesselsoe, M.; Iversen, N.
Applied and Environmental Microbiology, Vol. 69, Issue 11
https://doi.org/10.1128/AEM.69.11.6875-6887.2003

Microarray-Based Identification of a Novel Streptococcus pneumoniae Regulon Controlled by an Autoinduced Peptide
journal, September 2000

de Saizieu, A.; Gardes, C.; Flint, N.
Journal of Bacteriology, Vol. 182, Issue 17
https://doi.org/10.1128/JB.182.17.4696-4703.2000

A(r)Ray of Hope in Analysis of the Function and Diversity of Microbial Communities
journal, April 2003

Polz, Martin F.; Bertilsson, Stefan; Acinas, Silvia G.
The Biological Bulletin, Vol. 204, Issue 2
https://doi.org/10.2307/1543558

Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation
journal, September 2006

Brodie, E. L.; DeSantis, T. Z.; Joyner, D. C.
Applied and Environmental Microbiology, Vol. 72, Issue 9
https://doi.org/10.1128/AEM.00246-06

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
journal, August 2003

DeSantis, T. Z.; Dubosarskiy, I.; Murray, S. R.
Bioinformatics, Vol. 19, Issue 12
https://doi.org/10.1093/bioinformatics/btg200

Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray
journal, April 2005

DeSantis, Todd Z.; Stone, Carol E.; Murray, Sonya R.
FEMS Microbiology Letters, Vol. 245, Issue 2, p. 271-278
https://doi.org/10.1016/j.femsle.2005.03.016

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
journal, July 2006

DeSantis, T. Z.; Hugenholtz, P.; Larsen, N.
Applied and Environmental Microbiology, Vol. 72, Issue 7, p. 5069-5072
https://doi.org/10.1128/AEM.03006-05

High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment
journal, March 2007

DeSantis, Todd Z.; Brodie, Eoin L.; Moberg, Jordan P.
Microbial Ecology, Vol. 53, Issue 3
https://doi.org/10.1007/s00248-006-9134-9

Sequence-specific identification of 18 pathogenic microorganisms using microarray technology
journal, April 2002

Wilson, W. J.; Strout, C. L.; DeSantis, T. Z.
Molecular and Cellular Probes, Vol. 16, Issue 2
https://doi.org/10.1006/mcpr.2001.0397

High-Density Microarray of Small-Subunit Ribosomal DNA Probes
journal, May 2002

Wilson, K. H.; Wilson, W. J.; Radosevich, J. L.
Applied and Environmental Microbiology, Vol. 68, Issue 5
https://doi.org/10.1128/AEM.68.5.2535-2541.2002

Urban aerosols harbor diverse and dynamic bacterial populations
journal, December 2006

Brodie, E. L.; DeSantis, T. Z.; Parker, J. P. M.
Proceedings of the National Academy of Sciences, Vol. 104, Issue 1, p. 299-304
https://doi.org/10.1073/pnas.0608255104

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
journal, January 2007

Cole, J. R.; Chai, B.; Farris, R. J.
Nucleic Acids Research, Vol. 35, Issue Database
https://doi.org/10.1093/nar/gkl889

Estimating prokaryotic diversity and its limits
journal, July 2002

Curtis, T. P.; Sloan, W. T.; Scannell, J. W.
Proceedings of the National Academy of Sciences, Vol. 99, Issue 16, p. 10494-10499
https://doi.org/10.1073/pnas.142680199

Open source clustering software
journal, February 2004

de Hoon, M. J. L.; Imoto, S.; Nolan, J.
Bioinformatics, Vol. 20, Issue 9
https://doi.org/10.1093/bioinformatics/bth078

Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
journal, August 2005

Gans, J.
Science, Vol. 309, Issue 5739
https://doi.org/10.1126/science.1112665

Using ecological diversity measures with bacterial communities
journal, February 2003

Hill, Tom C. J.; Walsh, Kerry A.; Harris, James A.
FEMS Microbiology Ecology, Vol. 43, Issue 1
https://doi.org/10.1111/j.1574-6941.2003.tb01040.x

Long-Term Sustainability of a High-Energy, Low-Diversity Crustal Biome
journal, October 2006

Lin, L. -H.; Wang, P. -L.; Rumble, D.
Science, Vol. 314, Issue 5798
https://doi.org/10.1126/science.1127376

Phylogenetic structure of the prokaryotic domain: The primary kingdoms
journal, November 1977

Woese, C. R.; Fox, G. E.
Proceedings of the National Academy of Sciences, Vol. 74, Issue 11
https://doi.org/10.1073/pnas.74.11.5088

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
journal, August 2007

Frank, D. N.; St. Amand, A. L.; Feldman, R. A.
Proceedings of the National Academy of Sciences, Vol. 104, Issue 34, p. 13780-13785
https://doi.org/10.1073/pnas.0706625104

Microarray Applications in Microbial Ecology Research
journal, August 2006

Gentry, T. J.; Wickham, G. S.; Schadt, C. W.
Microbial Ecology, Vol. 52, Issue 2
https://doi.org/10.1007/s00248-006-9072-6

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria
journal, August 2010

Hazen, Terry C.; Dubinsky, Eric A.; DeSantis, Todd Z.
Science, Vol. 330, Issue 6001
https://doi.org/10.1126/science.1195979

Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays
journal, February 2005

Karaman, M. W.
Nucleic Acids Research, Vol. 33, Issue 3
https://doi.org/10.1093/nar/gni034

Optimal robust non-unique probe selection using Integer Linear Programming
journal, July 2004

Klau, G. W.; Rahmann, S.; Schliep, A.
Bioinformatics, Vol. 20, Issue Suppl 1
https://doi.org/10.1093/bioinformatics/bth936

Probe selection for high-density oligonucleotide arrays
journal, September 2003

Mei, R.; Hubbell, E.; Bekiranov, S.
Proceedings of the National Academy of Sciences, Vol. 100, Issue 20, p. 11237-11242
https://doi.org/10.1073/pnas.1534744100

Rapid quantitative profiling of complex microbial populations
journal, January 2006

Palmer, C.
Nucleic Acids Research, Vol. 34, Issue 1
https://doi.org/10.1093/nar/gnj007

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
journal, July 2009

Rajilić-Stojanović, Mirjana; Heilig, Hans G. H. J.; Molenaar, Douwe
Environmental Microbiology, Vol. 11, Issue 7
https://doi.org/10.1111/j.1462-2920.2009.01900.x

Unravelling Microbial Communities with DNA-Microarrays: Challenges and Future Directions
journal, March 2007

Wagner, Michael; Smidt, Hauke; Loy, Alexander
Microbial Ecology, Vol. 53, Issue 3
https://doi.org/10.1007/s00248-006-9197-7

Works referencing / citing this record:

System and method for the detection and treatment of infection by a microbial agent associated with HIV infection
patent, February 2017

Montagnier, Luc
US Patent Document 9,580,758
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/9580758

Methods for detecting and quantifying viable bacterial endo-spores
patent, January 2016

Venkateswaran, Kasthuri; Stam, Christina N.; Smiley, Ronald D.
US Patent Document 9,228,240
URL: https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/9228240

Similar Records in DOE Patents and OSTI.GOV collections:

Methods for selecting microbes from a diverse genetically modified library to detect and optimize the production of metabolites

Patent Church, George M.; Raman, Srivatsan; Taylor, Noah D.; ...

The present invention relates to genetically modified bacteria and methods of optimizing genetically modified bacteria for the production of a metabolite.
Full Text Available
Methods for selecting microbes from a diverse genetically modified library to detect and optimize the production of metabolites

Patent Church, George M.; Raman, Srivatsan; Taylor, Noah D.; ...

The present invention relates to genetically modified bacteria and methods of optimizing genetically modified bacteria for the production of a metabolite.
Full Text Available
Imaging, object detection, and change detection with a polarized multistatic GPR array

Patent Beer, N. Reginald; Paglieroni, David W.

A polarized detection system performs imaging, object detection, and change detection factoring in the orientation of an object relative to the orientation of transceivers. The polarized detection system may operate on one of several modes of operation based on whether the imaging, object detection, or change detection is performed separately for each transceiver orientation. In combined change mode, the polarized detection system performs imaging, object detection, and change detection separately for each transceiver orientation, and then combines changes across polarizations. In combined object mode, the polarized detection system performs imaging and object detection separately for each transceiver orientation, and thenmore » « less
Full Text Available
High-resolution parallel-detection sensor array using piezo-phototronics effect

Patent Wang, Zhong L.; Pan, Caofeng

A pressure sensor element includes a substrate, a first type of semiconductor material layer and an array of elongated light-emitting piezoelectric nanostructures extending upwardly from the first type of semiconductor material layer. A p-n junction is formed between each nanostructure and the first type semiconductor layer. An insulative resilient medium layer is infused around each of the elongated light-emitting piezoelectric nanostructures. A transparent planar electrode, disposed on the resilient medium layer, is electrically coupled to the top of each nanostructure. A voltage source is coupled to the first type of semiconductor material layer and the transparent planar electrode and appliesmore » « less
Full Text Available
Precise annealing of focal plane arrays for optical detection

Patent Bender, Daniel A.

Precise annealing of identified defective regions of a Focal Plane Array ("FPA") (e.g., exclusive of non-defective regions of the FPA) facilitates removal of defects from an FPA that has been hybridized and/or packaged with readout electronics. Radiation is optionally applied under operating conditions, such as under cryogenic temperatures, such that performance of an FPA can be evaluated before, during, and after annealing without requiring thermal cycling.
Full Text Available

Similar Records

Title: Array for detecting microbes

Abstract

Citation Formats

Degradation of environmental toxins by a filamentous bacterium patent, February 1999

Arrays of modified nucleic acid probes and methods of use patent, December 2000

Chip-based species identification and phenotypic characterization of microorganisms patent, May 2001

Nucleic acid arrays patent, July 2001

Arrays of nucleic acid probes for analyzing biotransformation genes and methods of using the same patent, October 2001

Computer-aided visualization and analysis system for sequence evaluation patent, August 2003

Microarray method of genotyping multiple samples at multiple LOCI patent, July 2005

Mycobacterial rpoB sequences patent, September 2006

Arrays of nucleic acid probes on biological chips patent, October 2006

Nucleic acid arrays to monitor water and other ecosystems patent, May 2007

System and method for detecting a biological entity in a water sample patent, November 2008

Oligonucleotides patent-application, December 2001

Genomic Profiling: A Rapid Method for Testing a Complex Biological Sample for the Presence of Many Types of Organisms patent-application, July 2002

Microbial identification chip based on DNA-DNA hybridization patent-application, December 2002

Methods for the survey and genetic analysis of populations patent-application, June 2004

Method of preparing reaction regions for biochips patent-application, August 2005

Enhanced sequencing by hybridization using pools of probes patent-application, September 2005

Genus, group, species and/or strain specific 16S rDNA sequences patent-application, March 2006

Method of designing probe set, microarray having substrate on which probe designed by the method is immobilized, and computer readable medium on which program for executing the method is recorded patent-application, March 2006

Probe design methods and microarrays for comparative genomic hybridization and location analysis patent-application, May 2006

Methods and Arrays for Identifying Human Microflora patent-application, November 2007

Method of Designing Probes for Detecting Target Sequence and Method of Detecting Target Sequence Using the Probes patent-application, June 2008

Microfluidic Analysis System patent-application, November 2008

Clustering Phylogenetic Variation Patterns patent-application, January 2009

DNA Fragments Array from Biomining Microorganisms and Method for Detection of Them patent-application, February 2009

Identification of Pathogens patent-application, November 2009

Molecular Diagnosis of Bacteremia patent-application, January 2011

Probes and Methods for Detection of Pathogens and Antibiotic Resistance patent-application, February 2001

Categorization of Microbial Communities patent-application, March 2011

Bacterial Species Determination from DNA-DNA Hybridization by Using Genome Fragments and DNA Microarrays journal, August 2001

Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays journal, May 1998

Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging: 16S rRNA hybridization using SPRi journal, November 2002

Prokaryotic Diversity--Magnitude, Dynamics, and Controlling Factors journal, May 2002

Real time quantitative PCR. journal, October 1996

Group testing with DNA chips: generating designs and decoding experiments conference, January 2003

A fast and flexible approach to oligonucleotide probe design for genomes and gene families journal, March 2007

Accurate method for fast design of diagnostic oligonucleotide probe sets for DNA microarrays conference, January 2003

Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree journal, July 2006

A DNA Microarray Platform Based on Direct Detection of rRNA for Characterization of Freshwater Sediment-Related Prokaryotic Communities journal, July 2006

The Isotope Array, a New Tool That Employs Substrate-Mediated Labeling of rRNA for Determination of Microbial Community Structure and Function journal, November 2003

Microarray-Based Identification of a Novel Streptococcus pneumoniae Regulon Controlled by an Autoinduced Peptide journal, September 2000

A(r)Ray of Hope in Analysis of the Function and Diversity of Microbial Communities journal, April 2003

Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation journal, September 2006

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA journal, August 2003

Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray journal, April 2005

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB journal, July 2006

High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment journal, March 2007

Sequence-specific identification of 18 pathogenic microorganisms using microarray technology journal, April 2002

High-Density Microarray of Small-Subunit Ribosomal DNA Probes journal, May 2002

Urban aerosols harbor diverse and dynamic bacterial populations journal, December 2006

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data journal, January 2007

Estimating prokaryotic diversity and its limits journal, July 2002

Open source clustering software journal, February 2004

Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil journal, August 2005

Using ecological diversity measures with bacterial communities journal, February 2003

Long-Term Sustainability of a High-Energy, Low-Diversity Crustal Biome journal, October 2006

Phylogenetic structure of the prokaryotic domain: The primary kingdoms journal, November 1977

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases journal, August 2007

Microarray Applications in Microbial Ecology Research journal, August 2006

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria journal, August 2010

Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays journal, February 2005

Optimal robust non-unique probe selection using Integer Linear Programming journal, July 2004

Probe selection for high-density oligonucleotide arrays journal, September 2003

Rapid quantitative profiling of complex microbial populations journal, January 2006

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults journal, July 2009

Unravelling Microbial Communities with DNA-Microarrays: Challenges and Future Directions journal, March 2007

System and method for the detection and treatment of infection by a microbial agent associated with HIV infection patent, February 2017

Methods for detecting and quantifying viable bacterial endo-spores patent, January 2016

Degradation of environmental toxins by a filamentous bacterium
patent, February 1999

Arrays of modified nucleic acid probes and methods of use
patent, December 2000

Chip-based species identification and phenotypic characterization of microorganisms
patent, May 2001

Nucleic acid arrays
patent, July 2001

Arrays of nucleic acid probes for analyzing biotransformation genes and methods of using the same
patent, October 2001

Computer-aided visualization and analysis system for sequence evaluation
patent, August 2003

Microarray method of genotyping multiple samples at multiple LOCI
patent, July 2005

Mycobacterial rpoB sequences
patent, September 2006

Arrays of nucleic acid probes on biological chips
patent, October 2006

Nucleic acid arrays to monitor water and other ecosystems
patent, May 2007

System and method for detecting a biological entity in a water sample
patent, November 2008

Oligonucleotides
patent-application, December 2001

Genomic Profiling: A Rapid Method for Testing a Complex Biological Sample for the Presence of Many Types of Organisms
patent-application, July 2002

Microbial identification chip based on DNA-DNA hybridization
patent-application, December 2002

Methods for the survey and genetic analysis of populations
patent-application, June 2004

Method of preparing reaction regions for biochips
patent-application, August 2005

Enhanced sequencing by hybridization using pools of probes
patent-application, September 2005

Genus, group, species and/or strain specific 16S rDNA sequences
patent-application, March 2006

Method of designing probe set, microarray having substrate on which probe designed by the method is immobilized, and computer readable medium on which program for executing the method is recorded
patent-application, March 2006

Probe design methods and microarrays for comparative genomic hybridization and location analysis
patent-application, May 2006

Methods and Arrays for Identifying Human Microflora
patent-application, November 2007

Method of Designing Probes for Detecting Target Sequence and Method of Detecting Target Sequence Using the Probes
patent-application, June 2008

Microfluidic Analysis System
patent-application, November 2008

Clustering Phylogenetic Variation Patterns
patent-application, January 2009

DNA Fragments Array from Biomining Microorganisms and Method for Detection of Them
patent-application, February 2009

Identification of Pathogens
patent-application, November 2009

Molecular Diagnosis of Bacteremia
patent-application, January 2011

Probes and Methods for Detection of Pathogens and Antibiotic Resistance
patent-application, February 2001

Categorization of Microbial Communities
patent-application, March 2011

Bacterial Species Determination from DNA-DNA Hybridization by Using Genome Fragments and DNA Microarrays
journal, August 2001

Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays
journal, May 1998

Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging: 16S rRNA hybridization using SPRi
journal, November 2002

Prokaryotic Diversity--Magnitude, Dynamics, and Controlling Factors
journal, May 2002

Real time quantitative PCR.
journal, October 1996

Group testing with DNA chips: generating designs and decoding experiments
conference, January 2003

A fast and flexible approach to oligonucleotide probe design for genomes and gene families
journal, March 2007

Accurate method for fast design of diagnostic oligonucleotide probe sets for DNA microarrays
conference, January 2003

Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree
journal, July 2006

A DNA Microarray Platform Based on Direct Detection of rRNA for Characterization of Freshwater Sediment-Related Prokaryotic Communities
journal, July 2006

The Isotope Array, a New Tool That Employs Substrate-Mediated Labeling of rRNA for Determination of Microbial Community Structure and Function
journal, November 2003

Microarray-Based Identification of a Novel Streptococcus pneumoniae Regulon Controlled by an Autoinduced Peptide
journal, September 2000

A(r)Ray of Hope in Analysis of the Function and Diversity of Microbial Communities
journal, April 2003

Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation
journal, September 2006

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
journal, August 2003

Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray
journal, April 2005

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
journal, July 2006

High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment
journal, March 2007

Sequence-specific identification of 18 pathogenic microorganisms using microarray technology
journal, April 2002

High-Density Microarray of Small-Subunit Ribosomal DNA Probes
journal, May 2002

Urban aerosols harbor diverse and dynamic bacterial populations
journal, December 2006

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
journal, January 2007

Estimating prokaryotic diversity and its limits
journal, July 2002

Open source clustering software
journal, February 2004

Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
journal, August 2005

Using ecological diversity measures with bacterial communities
journal, February 2003

Long-Term Sustainability of a High-Energy, Low-Diversity Crustal Biome
journal, October 2006

Phylogenetic structure of the prokaryotic domain: The primary kingdoms
journal, November 1977

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
journal, August 2007

Microarray Applications in Microbial Ecology Research
journal, August 2006

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria
journal, August 2010

Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays
journal, February 2005

Optimal robust non-unique probe selection using Integer Linear Programming
journal, July 2004

Probe selection for high-density oligonucleotide arrays
journal, September 2003

Rapid quantitative profiling of complex microbial populations
journal, January 2006

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
journal, July 2009

Unravelling Microbial Communities with DNA-Microarrays: Challenges and Future Directions
journal, March 2007

System and method for the detection and treatment of infection by a microbial agent associated with HIV infection
patent, February 2017

Methods for detecting and quantifying viable bacterial endo-spores
patent, January 2016