DOE Patents title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Thermophilic and thermoacidophilic sugar transporter genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods

Abstract

Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius are provided. Further provided are methods for transporting sugars across cell membranes using isolated and/or purified polypeptides and nucleic acid sequences from Alicyclobacillus acidocaldarius.

Inventors:
; ; ; ;
Issue Date:
Research Org.:
Idaho National Laboratory (INL), Idaho Falls, ID (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1107807
Patent Number(s):
8575323
Application Number:
13/721,172
Assignee:
Battelle Energy Alliance, LLC (Idaho Falls, ID)
Patent Classifications (CPCs):
C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES
DOE Contract Number:  
AC07-99ID13727; AC07-05ID14517
Resource Type:
Patent
Country of Publication:
United States
Language:
English
Subject:
60 APPLIED LIFE SCIENCES

Citation Formats

Thompson, David N, Apel, William A, Thompson, Vicki S, Reed, David W, and Lacey, Jeffrey A. Thermophilic and thermoacidophilic sugar transporter genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods. United States: N. p., 2013. Web.
Thompson, David N, Apel, William A, Thompson, Vicki S, Reed, David W, & Lacey, Jeffrey A. Thermophilic and thermoacidophilic sugar transporter genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods. United States.
Thompson, David N, Apel, William A, Thompson, Vicki S, Reed, David W, and Lacey, Jeffrey A. Tue . "Thermophilic and thermoacidophilic sugar transporter genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods". United States. https://www.osti.gov/servlets/purl/1107807.
@article{osti_1107807,
title = {Thermophilic and thermoacidophilic sugar transporter genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods},
author = {Thompson, David N and Apel, William A and Thompson, Vicki S and Reed, David W and Lacey, Jeffrey A},
abstractNote = {Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius are provided. Further provided are methods for transporting sugars across cell membranes using isolated and/or purified polypeptides and nucleic acid sequences from Alicyclobacillus acidocaldarius.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Tue Nov 05 00:00:00 EST 2013},
month = {Tue Nov 05 00:00:00 EST 2013}
}

Works referenced in this record:

The first description of an archaeal hemicellulase: the xylanase from Thermococcus zilligii strain AN1
journal, November 1999


Expression of microbial proteins in plants for production of plants with improved properties
patent-application, December 2003


Process for hydrolyzing starch without pH adjustment
patent-application, July 2003


Glycosyl hydrolases from hyperthermophiles
journal, February 1997


The nature of lignocellulosics and their pretreatments for enzymatic hydrolysis
book, January 1982


Conversion of a β-Ketoacyl Synthase to a Malonyl Decarboxylase by Replacement of the Active-Site Cysteine with Glutamine
journal, September 1999


Production of a cellulase-free xylanase from agricultural waste materials by a thermotolerant Streptomyces sp.
journal, October 2001


Microbial Pretreatment of Biomass: Potential for Reducing Severity of Thermochemical Biomass Pretreatment
journal, January 2003


Glycosylation Engineering: Controlling personalities tame wild sugars on proteins and natural products
journal, September 2006


Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods
patent-application, September 2009


Thermophilic Organisms For Conversion Of Lignocellulosic Biomass To Ethanol
patent-application, September 2009


Purification and Properties of Acid Stable Xylanases from Aspergillus kawachii
journal, January 1992


Temple, W. J., et al. Childhood melanoma
journal, January 1992


Xylanases in bleaching: From an idea to the industry
journal, March 1994


Synthesis of oligosaccharides, glycolipds, and glycoproteins using bacterial glycosyltransferases
patent-application, June 2007


Isolation and characterization of a new family 42 β-galactosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius: Identification of the active site residues
journal, February 2008



journal, October 2003


Xylanase obtained from an anaerobic fungus
patent, September 1999


Strand displacement amplification—an isothermal, in vitro DNA amplification technique
journal, January 1992


Molecular and biotechnological aspects of xylanases
journal, July 1999


Comparison of the economics of acid and enzymatic hydrolysis of newsprint
journal, April 1978


Baculovirus systems for the expression of human gene products
journal, October 1993


Multiple Chromosomes in Bacteria: The Yin and Yang of trp Gene Localization in Rhodobacter sphaeroides 2.4.1
journal, October 1999


Characterization of a β-glycosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius
journal, April 2006


Continuous cultures of fused cells secreting antibody of predefined specificity
journal, August 1975


Genetic disease detection and DNA amplification using cloned thermostable ligase.
journal, January 1991


Tomato plants that exhibit resistance to botrytis cinerea
patent-application, December 2003


Thermophilic and thermoacidophilic sugar transporter genes and enzymes from alicyclobacillus acidocaldarius and related organisms, methods
patent-application, October 2009


Manufacture of Xylose-Based Fermentation Media from Corncobs by Posthydrolysis of Autohydrolysis Liquors
journal, January 2001


Microbial process for producing L-ascorbic acid, D-erythorbic acid, and salts thereof
patent, August 2004


Biochemistry and genetics of microbial xylanases
journal, June 1996


Analytical strategies for the use of DNA probes
journal, February 1988


High temperature and alkaline stable catalase
patent-application, May 2005


Thermophilic and thermoacidophilic glycosylation genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods
patent-application, October 2009


Identification of essential genes in microorganisms
patent-application, February 2004


Preliminary Investigation of Fungal Bioprocessing of Wheat Straw for Production of Straw-Thermoplastic Composites
book, January 2003


Biotransformation of Toxic Organic and Inorganic Contaminants by Halophilic Bacteria
book, January 2004


Cellulase-free xylanases from Bacillus and other microorganisms
journal, February 2000


Functional reconstitution of a maltose ATP-binding cassette transporter from the thermoacidophilic gram-positive bacterium Alicyclobacillus acidocaldarius
journal, May 2004


Single molecule detection of RNA reporter probes by amplification with Qβ replicase
journal, August 1996


Bacterial glycoproteins: Functions, biosynthesis and applications
journal, April 2003


Overview and Evaluation of Fuel Ethanol from Cellulosic Biomass: Technology, Economics, the Environment, and Policy
journal, November 1996


Rapid production of thermostable cellulase-free xylanase by a strain of Bacillus subtilis and its properties
journal, June 2002


Microbial β-Glucosidases: Cloning, Properties, and Applications
journal, January 2002


Synthesis of an amplifiable reporter RNA for bioassays
journal, January 1986


Characterization of a new bacteriophage which infects bacteria of the genus Acidiphilium
journal, November 1993


Oxygen effects on thermophilic microbial populations in biofilters treating nitric oxide containing off-gas streams
journal, October 2001


‘Pseudomonas stutzeri’ strain and process for preparation of xylanase
patent, December 2004


Fungal Upgrading of Wheat Straw for Straw-Thermoplastics Production
book, January 2004


Transcriptional control in alicyclobacillus acidocaldarius and associated genes, proteins, and methods
patent-application, August 2009


The Synthesis of Bovine Insulin by the Solid Phase Method
journal, November 1966


Cloning and transcriptional analysis of the Thermoanaerobacter ethanolicus strain 39E maltose ABC transport system
journal, March 2002


Current applications of COS cell based transient expression systems
journal, October 1993


Quantitative Saccharification of Wood and Cellulose
journal, January 1945


Autocatalytic replication of a recombinant RNA
journal, December 1983


Lignocellulose biodegradation: Fundamentals and applications
journal, June 2002


Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability
journal, March 2001


Polypeptides of Alicyclobacillus sp.
patent-application, April 2007


Polymerase chain reaction
journal, November 1989


Transformation of Acidiphilium by electroporation and conjugation
journal, May 1992


Thermal and acid tolerant beta xylosidases, arabinofuranosidases, genes encoding, related organisms, and methods
patent-application, December 2010


An extremely thermostable xylanase from the thermophilic eubacterium Thermotoga
journal, July 1991


Thermoacidophilic Microorganisms and their Novel Biocatalysts
journal, December 2004


Method of detecting and characterizing a nucleic acid or reactant for the application of this method
patent, April 1986


Products and processes for in vitro synthesis of biomolecules
patent-application, September 2006


Powers and Pitfalls in Sequence Analysis: The 70% Hurdle
journal, April 2000


Polypeptides having haloperoxidase activity
patent, January 2003


Recent advances in heterologous gene expression in Escherichia coli
journal, October 1993


Dilute-Sulfuric Acid Pretreatment of Corn Stover in Pilot-Scale Reactor
book, January 2003


Compositions and methods for the synthesis and subsequent modification of uridine-5'-diphosphosulfoquinovose (UDP-SQ)
patent-application, June 2007


Pretreatment for enhanced hydrolysis of cellulosic biomass
journal, January 1984


Promoters and proteins from Clostridium thermocellum and uses thereof
patent-application, May 2006


Xylanases, xylanase families and extremophilic xylanases
journal, January 2005


Measurement of fumonisins in corn with a fiber optic fluoroimmunosensor
conference, May 1997


Purification and Characterization of a Novel Thermo-Alkali-Stable Catalase from Thermus brockianus
journal, January 2003


Genes encoding two different beta-glucosidases of Thermoanaerobacter brockii are clustered in a common operon.
journal, January 1997


Improved tools for biological sequence comparison.
journal, April 1988


Dilute Acid Pretreatment, Enzymatic Saccharification, and Fermentation of Rice Hulls to Ethanol
journal, January 2005


Development of gas phase bioreactors for the removal of nitrogen oxides from synthetic flue gas streams
journal, October 2002


The Path Forward for Biofuels and Biomaterials
journal, January 2006


Alteration and modulation of protein activity by varying post-translational modification
patent-application, August 2010


Partial acid hydrolysis of cellulosic materials as a pretreatment for enzymatic hydrolysis
journal, July 1980


Microbial Cellulose Utilization: Fundamentals and Biotechnology
journal, September 2002


Ethanol from lignocellulosic biomass techno-economic performance in short-, middle- and long-term
journal, April 2005


Thermostable xylanases
patent, July 2000


Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods
patent, April 2011


Melamine Deaminase and Atrazine Chlorohydrolase: 98 Percent Identical but Functionally Different
journal, April 2001


Immunogenicity and protective efficacy of a tuberculosis DNA vaccine
journal, August 1996


Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Lipids
journal, November 1998


A general method applicable to the search for similarities in the amino acid sequence of two proteins
journal, March 1970


The Effect of Flow Rate of Compressed Hot Water on Xylan, Lignin, and Total Mass Removal from Corn Stover
journal, September 2003


Electrotransformation of Acidophilic, Heterotrophic, Gram-negative Bacteria
book, January 2000


Yeast systems for the expression of heterologous gene products
journal, October 1993


Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format.
journal, February 1989


Comparison of pretreatment methods on the basis of available surface area
journal, January 1992


Lignochemicals
journal, February 1982


The acid hydrolysis of sugarcane bagasse hemicellulose to produce xylose, arabinose, glucose and other products
journal, November 2002


Xyloglucan-specific alkaline xyloglucanase from bacillus
patent, July 2001


A new class of biodegradable materials: Poly-3-hydroxy-butyrate/steam exploded straw fiber composites. I. Thermal and impact behavior
journal, September 1993


Biomechanical and Biochemical Pulping of Sugarcane Bagasse with Ceriporiopsis subvermispora Fungal and Xylanase Pretreatments
journal, March 2001


Molecular diversity of thermophilic cellulolytic and hemicellulolytic bacteria
journal, February 1999


Potential and utilization of thermophiles and thermostable enzymes in biorefining
journal, January 2007


Interlaboratory testing of methods for assay of xylanase activity
journal, May 1992


Glycosidases and glycosyl transferases in glycoside and oligosaccharide synthesis
journal, February 1998


Microbial hemicellulases
journal, June 2003


Enzyme and methodology for the treatment of a biomass
patent, June 2010


Purification, Properties and Structural Aspects of a Thermoacidophilic alpha-Amylase from Alicyclobacillus Acidocaldarius Atcc 27009
journal, December 1994


Purification and characterization of an acidophilic xylanase from Aureobasidium pullulans var. melanigenum and sequence analysis of the encoding gene
journal, January 2001


Industrial Scale-Up of pH-Controlled Liquid Hot Water Pretreatment of Corn Fiber for Fuel Ethanol Production
journal, January 2005


A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemiluminescent and enzyme labeled synthetic oligodeoxyribonucleotide probes
journal, January 1988


Purification and Properties of Two Thermostable Alkaline Xylanases from an Alkaliphilic Bacillussp
journal, September 1998


Deciphering the message in protein sequences: tolerance to amino acid substitutions
journal, March 1990


Cloning and characterization of two glycosidases from the acidothermophile Alicyclobacillus acidocaldarius ATCC27009
text, January 2004


Thermostable xylanase
patent, June 1999