Type II restriction-modification system methylation subunit of Alicyclobacillus acidocaldarius

Lee, Brady D; Newby, Deborah T; Lacey, Jeffrey A; Thompson, David N; Thompson, Vicki S; Apel, William A; Roberto, Francisco F; Reed, David W

Title: Type II restriction-modification system methylation subunit of Alicyclobacillus acidocaldarius

Abstract

Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius are provided. Further provided are methods for modulating or altering recombination inside or outside of a cell using isolated and/or purified polypeptides and/or nucleic acid sequences from Alicyclobacillus acidocaldarius.

Inventors:: Lee, Brady D; Newby, Deborah T; Lacey, Jeffrey A; Thompson, David N; Thompson, Vicki S; Apel, William A; Roberto, Francisco F; Reed, David W

Issue Date:: 2013-10-29

Research Org.:: Idaho National Laboratory (INL), Idaho Falls, ID (United States)

Sponsoring Org.:: USDOE

OSTI Identifier:: 1107782

Patent Number(s):: 8569030

Application Number:: 13/604,979

Assignee:: Battelle Energy Alliance, LLC (Idaho Falls, ID)

Patent Classifications (CPCs):: C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES

C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES

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C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES
C07K14/195 - from bacteria

C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
C12N15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
C12N15/87 - Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
C12N9/00 - Enzymes
C12N9/1007 - {Methyltransferases
C12N9/52 - derived from bacteria {or Archaea}

C - CHEMISTRY C12 - BIOCHEMISTRY C12Y - ENZYMES
C12Y201/01072 - Site-specific DNA-methyltransferase

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DOE Contract Number:: AC07-99ID13727; AC07-05ID14517

Resource Type:: Patent

Country of Publication:: United States

Language:: English

Subject:: 60 APPLIED LIFE SCIENCES

Citation Formats


                    Lee, Brady D, Newby, Deborah T, Lacey, Jeffrey A, Thompson, David N, Thompson, Vicki S, Apel, William A, Roberto, Francisco F, and Reed, David W. Type II restriction-modification system methylation subunit of Alicyclobacillus acidocaldarius.  United States: N. p., 2013. 
        Web.

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                    Lee, Brady D, Newby, Deborah T, Lacey, Jeffrey A, Thompson, David N, Thompson, Vicki S, Apel, William A, Roberto, Francisco F, & Reed, David W. Type II restriction-modification system methylation subunit of Alicyclobacillus acidocaldarius.  United States.

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                    Lee, Brady D, Newby, Deborah T, Lacey, Jeffrey A, Thompson, David N, Thompson, Vicki S, Apel, William A, Roberto, Francisco F, and Reed, David W. Tue .  
        "Type II restriction-modification system methylation subunit of Alicyclobacillus acidocaldarius".  United States.  https://www.osti.gov/servlets/purl/1107782.

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@article{osti_1107782,

  title        = {Type II restriction-modification system methylation subunit of Alicyclobacillus acidocaldarius},

  author       = {Lee, Brady D and Newby, Deborah T and Lacey, Jeffrey A and Thompson, David N and Thompson, Vicki S and Apel, William A and Roberto, Francisco F and Reed, David W},

  abstractNote = {Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius are provided. Further provided are methods for modulating or altering recombination inside or outside of a cell using isolated and/or purified polypeptides and/or nucleic acid sequences from Alicyclobacillus acidocaldarius.},

  doi          = {},

  journal      = {},
number       = ,

  volume       = ,

  place        = {United States},

  year         = {2013},

  month        = {10}

}

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Title: Type II restriction-modification system methylation subunit of Alicyclobacillus acidocaldarius

Abstract

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PCR ligation mutagenesis in transformable streptococci: application and efficiency
journal, April 2002

Thermophilic and thermoacidophilic sugar transporter genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods
patent, December 2011

Conversion of a β-Ketoacyl Synthase to a Malonyl Decarboxylase by Replacement of the Active-Site Cysteine with Glutamine
journal, September 1999

Production of a cellulase-free xylanase from agricultural waste materials by a thermotolerant Streptomyces sp.
journal, October 2001

Glycosylation Engineering: Controlling personalities tame wild sugars on proteins and natural products
journal, September 2006

Microbial Pretreatment of Biomass: Potential for Reducing Severity of Thermochemical Biomass Pretreatment
journal, January 2003

Probe containing a modified nucleic acid recognizable by specific antibodies and use of this probe to detect and characterize a homologous dna sequence
patent, March 1992

Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods
patent-application, September 2009

Thermophilic Organisms For Conversion Of Lignocellulosic Biomass To Ethanol
patent-application, September 2009

Purification and Properties of Acid Stable Xylanases from Aspergillus kawachii
journal, January 1992

Temple, W. J., et al. Childhood melanoma
journal, January 1992

Xylanases in bleaching: From an idea to the industry
journal, March 1994

Synthesis of oligosaccharides, glycolipds, and glycoproteins using bacterial glycosyltransferases
patent-application, June 2007

Isolation and characterization of a new family 42 β-galactosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius: Identification of the active site residues
journal, February 2008

Maltose and Maltodextrin Transport in the Thermoacidophilic Gram-Positive Bacterium Alicyclobacillus acidocaldarius Is Mediated by a High-Affinity Transport System That Includes a Maltose Binding Protein Tolerant to Low pH
journal, November 2000

Xylanase obtained from an anaerobic fungus
patent, September 1999

Strand displacement amplification—an isothermal, in vitro DNA amplification technique
journal, January 1992

Molecular and biotechnological aspects of xylanases
journal, July 1999

Comparison of the economics of acid and enzymatic hydrolysis of newsprint
journal, April 1978

Baculovirus systems for the expression of human gene products
journal, October 1993

Multiple Chromosomes in Bacteria: The Yin and Yang of trp Gene Localization in Rhodobacter sphaeroides 2.4.1
journal, October 1999

Characterization of a β-glycosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius
journal, April 2006

Continuous cultures of fused cells secreting antibody of predefined specificity
journal, August 1975

Lignocellulosic Biomass to Ethanol Process Design and Economics Utilizing Co-Current Dilute Acid Prehydrolysis and Enzymatic Hydrolysis for Corn Stover
report, June 2002

Genetic disease detection and DNA amplification using cloned thermostable ligase.
journal, January 1991

Tomato plants that exhibit resistance to botrytis cinerea
patent-application, December 2003

Thermophilic and thermoacidophilic sugar transporter genes and enzymes from alicyclobacillus acidocaldarius and related organisms, methods
patent-application, October 2009

Thermophilic and thermoacidophilic biopolymer-degrading genes and enzymes from alicyclobacillus acidocaldarius and related organisms, methods
patent, December 2010

Manufacture of Xylose-Based Fermentation Media from Corncobs by Posthydrolysis of Autohydrolysis Liquors
journal, January 2001

Microbial process for producing L-ascorbic acid, D-erythorbic acid, and salts thereof
patent, August 2004

A thermoacidophilic endoglucanase (CelB) from Alicyclobacillus acidocaldarius displays high sequence similarity to arabinofuranosidases belonging to family 51 of glycoside hydrolases
journal, August 2003

Biochemistry and genetics of microbial xylanases
journal, June 1996

Analytical strategies for the use of DNA probes
journal, February 1988

Plasmid, method for construction of the same, microorganism carrying the plasmid and method for cultivation of the microorganism
patent, November 1986

Process for pretreating cellulosic substrates and for producing sugar therefrom
patent, December 1980

Thermophilic and thermoacidophilic glycosylation genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods
patent-application, October 2009

High temperature and alkaline stable catalase
patent-application, May 2005

Identification of essential genes in microorganisms
patent-application, February 2004

Preliminary Investigation of Fungal Bioprocessing of Wheat Straw for Production of Straw-Thermoplastic Composites
book, January 2003

Biotransformation of Toxic Organic and Inorganic Contaminants by Halophilic Bacteria
book, January 2004

Cellulase-free xylanases from Bacillus and other microorganisms
journal, February 2000

Functional reconstitution of a maltose ATP-binding cassette transporter from the thermoacidophilic gram-positive bacterium Alicyclobacillus acidocaldarius
journal, May 2004

Single molecule detection of RNA reporter probes by amplification with Qβ replicase
journal, August 1996

Bacterial glycoproteins: Functions, biosynthesis and applications
journal, April 2003

Overview and Evaluation of Fuel Ethanol from Cellulosic Biomass: Technology, Economics, the Environment, and Policy
journal, November 1996

Rapid production of thermostable cellulase-free xylanase by a strain of Bacillus subtilis and its properties
journal, June 2002

Microbial β-Glucosidases: Cloning, Properties, and Applications
journal, January 2002

Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH
journal, December 1998

Synthesis of an amplifiable reporter RNA for bioassays
journal, January 1986

Characterization of a new bacteriophage which infects bacteria of the genus Acidiphilium
journal, November 1993

Genetic elements, proteins, and associated methods including application of additional genetic information to gram (+) thermoacidophiles
patent-application, November 2011

Oxygen effects on thermophilic microbial populations in biofilters treating nitric oxide containing off-gas streams
journal, October 2001

‘Pseudomonas stutzeri’ strain and process for preparation of xylanase
patent, December 2004

Fungal Upgrading of Wheat Straw for Straw-Thermoplastics Production
book, January 2004

Transcriptional control in alicyclobacillus acidocaldarius and associated genes, proteins, and methods
patent-application, August 2009

The Synthesis of Bovine Insulin by the Solid Phase Method
journal, November 1966

Thermostable .alpha.-L-arabinofuranosidase from Aureobasidium pullulans
patent, March 1999

Current applications of COS cell based transient expression systems
journal, October 1993

Cloning and transcriptional analysis of the Thermoanaerobacter ethanolicus strain 39E maltose ABC transport system
journal, March 2002

Quantitative Saccharification of Wood and Cellulose
journal, January 1945

Autocatalytic replication of a recombinant RNA
journal, December 1983

Lignocellulose biodegradation: Fundamentals and applications
journal, June 2002

Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability
journal, March 2001

Polypeptides of Alicyclobacillus sp.
patent-application, April 2007

Polymerase chain reaction
journal, November 1989

Transformation of Acidiphilium by electroporation and conjugation
journal, May 1992

Thermal and acid tolerant beta xylosidases, arabinofuranosidases, genes encoding, related organisms, and methods
patent-application, December 2010

An extremely thermostable xylanase from the thermophilic eubacterium Thermotoga
journal, July 1991

Thermoacidophilic Microorganisms and their Novel Biocatalysts
journal, December 2004

Method of detecting and characterizing a nucleic acid or reactant for the application of this method
patent, April 1986

Products and processes for in vitro synthesis of biomolecules
patent-application, September 2006

Powers and Pitfalls in Sequence Analysis: The 70% Hurdle
journal, April 2000

Chemical Makers Try Biotech Paths: Vitamins and a new DuPont polyester are paving the way for biocatalysis use
journal, June 1998

Purification, characterization, and gene cloning of thermopsin, a thermostable acid protease from Sulfolobus acidocaldarius.
journal, January 1990

Polypeptides having haloperoxidase activity
patent, January 2003