Modulating lignin in plants
Abstract
Materials and methods for modulating (e.g., increasing or decreasing) lignin content in plants are disclosed. For example, nucleic acids encoding lignin-modulating polypeptides are disclosed as well as methods for using such nucleic acids to generate transgenic plants having a modulated lignin content.
- Inventors:
- Issue Date:
- Research Org.:
- Ceres, Inc., Thousand Oaks, CA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1082674
- Patent Number(s):
- 8362322
- Application Number:
- 12/446,929
- Assignee:
- Ceres, Inc. (Thousand Oaks, CA)
- Patent Classifications (CPCs):
-
C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
- DOE Contract Number:
- FG02-05ER64111
- Resource Type:
- Patent
- Resource Relation:
- Patent File Date: 2007 Oct 26
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES
Citation Formats
Apuya, Nestor, Bobzin, Steven Craig, Okamuro, Jack, and Zhang, Ke. Modulating lignin in plants. United States: N. p., 2013.
Web.
Apuya, Nestor, Bobzin, Steven Craig, Okamuro, Jack, & Zhang, Ke. Modulating lignin in plants. United States.
Apuya, Nestor, Bobzin, Steven Craig, Okamuro, Jack, and Zhang, Ke. Tue .
"Modulating lignin in plants". United States. https://www.osti.gov/servlets/purl/1082674.
@article{osti_1082674,
title = {Modulating lignin in plants},
author = {Apuya, Nestor and Bobzin, Steven Craig and Okamuro, Jack and Zhang, Ke},
abstractNote = {Materials and methods for modulating (e.g., increasing or decreasing) lignin content in plants are disclosed. For example, nucleic acids encoding lignin-modulating polypeptides are disclosed as well as methods for using such nucleic acids to generate transgenic plants having a modulated lignin content.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Tue Jan 29 00:00:00 EST 2013},
month = {Tue Jan 29 00:00:00 EST 2013}
}
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
A rice cab gene promoter contains separate cis-acting elements that regulate expression in dicot and monocot plants.
journal, August 1992
- Luan, S.; Bogorad, L.
- The Plant Cell, Vol. 4, Issue 8
Methods for simultaneous control of lignin content and composition, and cellulose content in plants
patent-application, September 2002
- C. Chiang, Vincent Lee; Li, Laigeng
- US Patent Application 09/947027; 20020124281
Methods and means for monitoring and modulating gene silencing
patent-application, September 2003
- Waterhouse, Peter; Wesley, Susan; Helliwell, Chris
- US Patent Application 10/385546; 20030175783
Adsorption of high-purity endo-1,4-β-glucanases from Trichoderma reesei on components of lignocellulosic materials: Cellulose, lignin, and xylan
journal, August 1988
- Chernoglazov, Vladimir M.; Ermolova, Olga V.; Klyosov, Anatole A.
- Enzyme and Microbial Technology, Vol. 10, Issue 8, p. 503-507
Tissue-specific light-regulated expression directed by the promoter of a C4 gene, maize pyruvate,orthophosphate dikinase, in a C3 plant, rice.
journal, October 1993
- Matsuoka, M.; Tada, Y.; Fujimura, T.
- Proceedings of the National Academy of Sciences, Vol. 90, Issue 20
Expressing Ribozymes in Plants
book, January 1997
- de Feyter, Rob; Gaudron, Judith
- Ribozyme Protocols
Morpholino Antisense Oligomers: Design, Preparation, and Properties
journal, June 1997
- Summerton, James; Weller, Dwight
- Antisense and Nucleic Acid Drug Development, Vol. 7, Issue 3
Ribozymes
patent, October 1993
- Haseloff, James; Gerlach, Wayne; Jennings, Philip Anthony
- US Patent Document 5,254,678
Promoter, promoter control elements, and combinations, and uses thereof
patent, July 2008
- Cook, Zhihong; Fang, Yiwen; Feldmann, Ken
- US Patent Document 7,402,667
Vascular-specific expression of the bean GRP 1.8 gene is negatively regulated.
journal, October 1991
- Keller, B.; Baumgartner, C.
- The Plant Cell, Vol. 3, Issue 10
Multiple sequence alignment with the Clustal series of programs
journal, July 2003
- Chenna, R.
- Nucleic Acids Research, Vol. 31, Issue 13
4-coumarate co-enzyme a ligase promoter
patent, December 2004
- Chiang, Vincent; Tsai, Chung-Jui; Hu, Wen-Jing
- US Patent Document 6,831,208
An octopine synthase enhancer element directs tissue-specific expression and binds ASF-1, a factor from tobacco nuclear extracts.
journal, October 1989
- Fromm, H.; Katagiri, F.; Chua, N. H.
- The Plant Cell, Vol. 1, Issue 10
Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom
journal, January 2009
- Xu, Zhanyou; Zhang, Dandan; Hu, Jun
- BMC Bioinformatics, Vol. 10, Issue Suppl 11
Can Lignin Be Accurately Measured?
journal, January 2005
- Hatfield, Ronald; Fukushima, Romualdo S.
- Crop Science, Vol. 45, Issue 3
Sequence-determined DNA fragments and corresponding polypeptides encoded thereby
patent-application,
- Alexandrov, Nickolai; Brover, Vyacheslav
- US Patent Application 11/056355; 20060150283
The Commelina yellow mottle virus promoter is a strong promoter in vascular and reproductive tissues.
journal, February 1992
- Medberry, S. L.; Lockhart, B. E.; Olszewski, N. E.
- The Plant Cell, Vol. 4, Issue 2
Promoter, promoter control elements, and combinations, and uses thereof
patent, February 2007
- Fang, Yiwen
- US Patent Document 7,173,121
DNA Sequences That Activate Isocitrate Lyase Gene Expression during Late Embryogenesis and during Postgerminative Growth
journal, April 1996
- Zhang, J. Z.; Santes, C. M.; Engel, M. L.
- Plant Physiology, Vol. 110, Issue 4
Genetic engineering of novel plant phenotypes
patent, July 1991
- Jorgensen, Richard A.; Napoli, Carolyn A.
- US Patent Document 5,034,323
A sunflower helianthinin gene upstream sequence ensemble contains an enhancer and sites of nuclear protein interaction.
journal, September 1989
- Jordano, J.; Almoguera, C.; Thomas, T. L.
- The Plant Cell, Vol. 1, Issue 9
Promoters from Genes for Plastid Proteins Possess Regions with Different Sensitivities toward Red and Blue Light
journal, March 1994
- Lubberstedt, T.; Bolle, Ceh.; Sopory, S.
- Plant Physiology, Vol. 104, Issue 3
Method for preparing fertile transgenic corn plants
patent, July 1996
- Lundquist, Ronald C.; Walters, David A.
- US Patent Document 5,538,880
New Construct Approaches for Efficient Gene Silencing in Plants
journal, June 2006
- Yan, Hua; Chretien, Robert; Ye, Jingsong
- Plant Physiology, Vol. 141, Issue 4
Methods for obtaining modified phenotypes in plant cells
patent, July 2002
- Waterhouse, Peter; Wang, Ming-Bo
- US Patent Document 6,423,885
Methods and means for obtaining modified phenotypes
patent-application, October 2004
- Waterhouse, Peter Michael; Wang, Ming-Bo; Graham, Michael Wayne
- US Patent Application 10/755328; 20040214330
RNA ribozyme polymerases, dephosphorylases, restriction endoribonucleases and methods
patent, January 1991
- Cech, Thomas R.; Zaug, Arthur J.; Been, Michael D.
- US Patent Document 4,987,071
Elicitor-inducible and constitutive in vivo DNA footprints indicate novel cis-acting elements in the promoter of a parsley gene encoding pathogenesis-related protein 1.
journal, March 1991
- Meier, I.; Hahlbrock, K.; Somssich, I. E.
- The Plant Cell, Vol. 3, Issue 3
Method and apparatus for introducing biological substances into living cells
patent, April 1993
- Sanford, John C.; DeVit, Michael J.; Bruner, Ronald F.
- US Patent Document 5,204,253
Gene silencing
patent-application, September 2003
- Lowe, Alexandra Louise; Hamilton, Andrew John; Grierson, Donald
- US Patent Application 10/085418; 20030175965
Cell cycle genes and related methods
patent-application, January 2006
- Forster, Richard I.; Connett, Marie B.; Emerson, Sarah Jane
- US Patent Application 11/024959; 20060010516
Methods to assay for post-transcriptional suppression of gene expression
patent, September 2002
- Bedbrook, John R.; Gutterson, Neal I.; Oeller, Paul
- US Patent Document 6,452,067
Regulatory regions from Papaveraceae
patent, December 2007
- Apuya, Nestor; Lu, Yuping
- US Patent Document 7,312,376
Methods and means for producing barley yellow dwarf virus resistant cereal plants
patent, August 2004
- Waterhouse, Peter; Wang, Ming-Bo; Abbott, David D.
- US Patent Document 6,777,588
Par-related protein promoters
patent-application, November 2006
- Fang, Yiwen; Medrano, Leonard; Theiss, Noah
- US Patent Application 11/414142; 20060260004
Regulation of b-Glucuronidase Expression in Transgenic Tobacco Plants by an A/T-Rich, cis-Acting Sequence Found Upstream of a French Bean b-Phaseolin Gene
journal, September 1989
- Bustos, Mauricio M.; Guiltinan, Mark J.; Jordano, Juan
- The Plant Cell, Vol. 1, Issue 9
RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease
journal, January 2004
- Dai, S.; Zhang, Z.; Chen, S.
- Proceedings of the National Academy of Sciences, Vol. 101, Issue 2, p. 687-692
Method for altering the nutritional content of plant seed
patent, December 2001
- Kirihara, Julie A.; Hibberd, Kenneth A.; Anthony, Janice
- US Patent Document 6,326,527
The Promoter of a Pine Photosynthetic Gene Allows Expression of a β-Glucuronidase Reporter Gene in Transgenic Rice Plants in a Light-Independent but Tissue-Specific Manner
journal, January 1994
- Yamamoto, Naoki; Tada, Yuichi; Fujimura, Tatsuhito
- Plant and Cell Physiology, Vol. 35, Issue 5
Corn inbred lines for dairy cattle feed
patent, September 2000
- Beck, James F.; Storck, Dale H.
- US Patent Document 6,114,609
Sucrose synthase 3 promoter from rice and uses thereof
patent, September 2008
- Dang, David Vandinh
- US Patent Document 7,429,692
Site-specific mutations alter in vitro factor binding and change promoter expression pattern in transgenic plants.
journal, October 1989
- Lam, E.; Benfey, P. N.; Gilmartin, P. M.
- Proceedings of the National Academy of Sciences, Vol. 86, Issue 20
Adsorption of Clostridium thermocellum cellulases onto pretreated mixed hardwood, avicel, and lignin
journal, September 1993
- Bernardez, Timothy D.; Lyford, Kimberly; Hogsett, David A.
- Biotechnology and Bioengineering, Vol. 42, Issue 7, p. 899-907
Promoter, promoter control elements, and combinations, and uses thereof
patent, May 2007
- Pennell, Roger
- US Patent Document 7,214,789
Promoter, promoter control elements, and combinations, and uses thereof
patent, May 2008
- Apuya, Nestor; Kwok, Shing; Alexandrov, Nickolai
- US Patent Document 7,378,571
Modified gene-silencing RNA and uses thereof
patent-application, September 2003
- Wang, Ming-Bo; Waterhouse, Peter
- US Patent Application 10/385521; 20030180945
Promoter, promoter control elements, and combinations, and uses thereof
patent-application, January 2007
- Cook, Zhihong; Fang, Yiwen; Feldmann, Kenneth
- US Patent Application 11/058689; 20070006335
ProbCons: Probabilistic consistency-based multiple sequence alignment
journal, January 2005
- Do, C. B.
- Genome Research, Vol. 15, Issue 2, p. 330-340
Isolation of Transcriptionally Regulated Root-Specific Genes from Tobacco
journal, July 1990
- Conkling, M. A.; Cheng, C.-l.; Yamamoto, Y. T.
- Plant Physiology, Vol. 93, Issue 3, p. 1203-1211
Fertile transgenic corn plants
patent, January 2000
- Lundquist, Ronald C.; Walters, David A.
- US Patent Document 6,013,863
Genomic evidence for two functionally distinct gene classes
journal, May 1998
- Rivera, M. C.; Jain, R.; Moore, J. E.
- Proceedings of the National Academy of Sciences, Vol. 95, Issue 11
P450 polynucleotides, polypeptides, and uses thereof
patent-application, February 2006
- Cook, Zhihong C.
- US Patent Application 11/208308; 20060041952
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
journal, January 1999
- Bateman, A.; Birney, E.; Durbin, R.
- Nucleic Acids Research, Vol. 27, Issue 1
Manipulation of lignin composition in plants using a tissue-specific promoter
patent, August 2003
- Chapple, Clinton C. S.
- US Patent Document 6,610,908
Caffeoyl-CoA 3-O-methyltransferase genes
patent, March 1998
- Matern, Ulrich; Hain, Rudiger; Reif, Hans-Jorg
- US Patent Document 5,728,570
A 146 bp fragment of the tobacco Lhcb1*2 promoter confers very-low-fluence, low-fluence and high-irradiance responses of phytochrome to a minimal CaMV 35S promoter
journal, January 1997
- Cerdán, Pablo D.; Staneloni, Roberto J.; Casal, Jorge J.
- Plant Molecular Biology, Vol. 33, Issue 2, p. 245-255
Promoter, promoter control elements, and combinations, and uses thereof
patent-application, January 2006
- Cook, Zhihong; Fang, Yiwen; Feldmann, Kenneth A.
- US Patent Application 11/097589; 20060021083
Factors affecting Agrobacterium tumefaciens -mediated transformation of peppermint
journal, January 2000
- Niu, X.; Li, X.; Veronese, P.
- Plant Cell Reports, Vol. 19, Issue 3
The effect of initial pore volume and lignin content on the enzymatic hydrolysis of softwoods
journal, May 1998
- Mooney, Caitriona A.; Mansfield, Shawn D.; Touhy, Maria G.
- Bioresource Technology, Vol. 64, Issue 2, p. 113-119
Effective ribozyme delivery in plant cells.
journal, June 1995
- Perriman, R.; Bruening, G.; Dennis, E. S.
- Proceedings of the National Academy of Sciences, Vol. 92, Issue 13, p. 6175-6179
Early light-induced protein promoters
patent, October 2009
- Cook, Zhihong; Medrano, Leonard
- US Patent Document 7,598,367
Peptide Nucleic Acids (PNA) Synthesis, properties and potential applications
journal, January 1996
- Hyrup, Birgitte; Nielsen, Peter E.
- Bioorganic & Medicinal Chemistry, Vol. 4, Issue 1, p. 5-23
Modification of lignin content and composition in plants
patent, August 2002
- Ye, Zheng
- US Patent Document 6,441,272
Binding site requirements for pea nuclear protein factor GT-1 correlate with sequences required for light-dependent transcriptional activation of the rbcS-3A gene.
journal, December 1988
- Green, P. J.; Yong, M. H.; Cuozzo, M.
- The EMBO Journal, Vol. 7, Issue 13
Genetic engineering of novel plant phenotypes
patent, July 1993
- Jorgensen, Richard A.; Napoli, Carolyn A.
- US Patent Document 5,231,020
Genetic constructs for delaying or repressing the expression of a target gene
patent, June 2003
- Graham, Michael Wayne
- US Patent Document 6,573,099
Global Carbon Sinks and Their Variability Inferred from Atmospheric O2 and δ13C
journal, March 2000
- Battle, M.; Bender, M.L.; Tans, P.P.
- Science, Vol. 287, Issue 5462, p. 2467-2470
Simultaneous saccharification and fermentation of pretreated hardwoods: Effect of Native Lignin Content
journal, January 1997
- Vinzant, Todd B.; Ehrman, Christine I.; Adney, William S.
- Applied Biochemistry and Biotechnology, Vol. 62, Issue 1
Pfam: multiple sequence alignments and HMM-profiles of protein domains
journal, January 1998
- Sonnhammer, E.
- Nucleic Acids Research, Vol. 26, Issue 1
Protein tolerance to random amino acid change
journal, June 2004
- Guo, H. H.; Choe, J.; Loeb, L. A.
- Proceedings of the National Academy of Sciences, Vol. 101, Issue 25, p. 9205-9210
Gene silencing
patent, June 2004
- Baulcombe, David Charles; Hamilton, Andrew John
- US Patent Document 6,753,139
Works referencing / citing this record:
Modulating the level of components within plants
patent, September 2017
- Bobzin, Steven Craig; Apuya, Nestor; Chiang, Karen
- US Patent Document 9,758,790
Hydrolysis of cellulosic fines in primary clarified sludge of paper mills and the addition of a surfactant to increase the yield
patent, December 2017
- Min, Byeong Cheol; Bhayani, Bhavin V.; Ramarao, Bandaru V.
- US Patent Document 9,850,512
Methods and materials for high throughput testing of transgene combinations
patent, August 2015
- Pennell, Roger; Hamilton, Richard; Portereiko, Michael F.
- US Patent Document 9,101,100
Biofuel production methods and compositions
patent, April 2016
- Dixon, Richard A.; Chen, Fang; Wang, Zengyu
- US Patent Document 9,309,528