Cellulolytic enzymes, nucleic acids encoding them and methods for making and using them
Abstract
The invention provides polypeptides having any cellulolytic activity, e.g., a cellulase activity, a endoglucanase, a cellobiohydrolase, a beta-glucosidase, a xylanase, a mannanse, a .beta.-xylosidase, an arabinofuranosidase, and/or an oligomerase activity, polynucleotides encoding these polypeptides, and methods of making and using these polynucleotides and polypeptides. In one aspect, the invention is directed to polypeptides having any cellulolytic activity, e.g., a cellulase activity, e.g., endoglucanase, cellobiohydrolase, beta-glucosidase, xylanase, mannanse, .beta.-xylosidase, arabinofuranosidase, and/or oligomerase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. In one aspect, the invention provides polypeptides having an oligomerase activity, e.g., enzymes that convert recalcitrant soluble oligomers to fermentable sugars in the saccharification of biomass. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts. The invention also provides compositions or products of manufacture comprising mixtures of enzymes comprising at least one enzyme of this invention.
- Inventors:
-
- San Diego, CA
- Emeryville, CA
- Issue Date:
- Research Org.:
- EI DUPORN NEMOURS & CO
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1034636
- Patent Number(s):
- 8101393
- Application Number:
- 12/278,958
- Assignee:
- BP Corporation North America Inc. (Houston, TX)
- Patent Classifications (CPCs):
-
A - HUMAN NECESSITIES A61 - MEDICAL OR VETERINARY SCIENCE A61P - SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
- DOE Contract Number:
- FC36-03GO13146
- Resource Type:
- Patent
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES
Citation Formats
Gray, Kevin A, Zhao, Lishan, and Cayouette, Michelle H. Cellulolytic enzymes, nucleic acids encoding them and methods for making and using them. United States: N. p., 2012.
Web.
Gray, Kevin A, Zhao, Lishan, & Cayouette, Michelle H. Cellulolytic enzymes, nucleic acids encoding them and methods for making and using them. United States.
Gray, Kevin A, Zhao, Lishan, and Cayouette, Michelle H. Tue .
"Cellulolytic enzymes, nucleic acids encoding them and methods for making and using them". United States. https://www.osti.gov/servlets/purl/1034636.
@article{osti_1034636,
title = {Cellulolytic enzymes, nucleic acids encoding them and methods for making and using them},
author = {Gray, Kevin A and Zhao, Lishan and Cayouette, Michelle H},
abstractNote = {The invention provides polypeptides having any cellulolytic activity, e.g., a cellulase activity, a endoglucanase, a cellobiohydrolase, a beta-glucosidase, a xylanase, a mannanse, a .beta.-xylosidase, an arabinofuranosidase, and/or an oligomerase activity, polynucleotides encoding these polypeptides, and methods of making and using these polynucleotides and polypeptides. In one aspect, the invention is directed to polypeptides having any cellulolytic activity, e.g., a cellulase activity, e.g., endoglucanase, cellobiohydrolase, beta-glucosidase, xylanase, mannanse, .beta.-xylosidase, arabinofuranosidase, and/or oligomerase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. In one aspect, the invention provides polypeptides having an oligomerase activity, e.g., enzymes that convert recalcitrant soluble oligomers to fermentable sugars in the saccharification of biomass. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts. The invention also provides compositions or products of manufacture comprising mixtures of enzymes comprising at least one enzyme of this invention.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Tue Jan 24 00:00:00 EST 2012},
month = {Tue Jan 24 00:00:00 EST 2012}
}
Works referenced in this record:
Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design
journal, August 2005
- Chica, Roberto A.; Doucet, Nicolas; Pelletier, Joelle N.
- Current Opinion in Biotechnology, Vol. 16, Issue 4, p. 378-384
Conversion of a β-Ketoacyl Synthase to a Malonyl Decarboxylase by Replacement of the Active-Site Cysteine with Glutamine
journal, September 1999
- Witkowski, Andrzej; Joshi, Anil K.; Lindqvist, Ylva
- Biochemistry, Vol. 38, Issue 36, p. 11643-11650
FUNCTIONAL GENOMICS: Expression Cloning in the Test Tube
journal, August 1997
- King, R. W.
- Science, Vol. 277, Issue 5328
Activity studies of eight purified cellulases: Specificity, synergism, and binding domain effects
journal, October 1993
- Irwin, Diana C.; Spezio, Michael; Walker, Larry P.
- Biotechnology and Bioengineering, Vol. 42, Issue 8
Trends in biochemistry and enzymology of cellulose degradation
journal, November 1990
- Klyosov, A. A.
- Biochemistry, Vol. 29, Issue 47
Developments in Directed Evolution for Improving Enzyme Functions
journal, August 2007
- Sen, S.; Venkata Dasu, V.; Mandal, B.
- Applied Biochemistry and Biotechnology, Vol. 143, Issue 3, p. 212-223
Structural and sequence-based classification of glycoside hydrolases
journal, October 1997
- Henrissat, Bernard; Davies, Gideon
- Current Opinion in Structural Biology, Vol. 7, Issue 5, p. 637-644
Directed evolution of an aspartate aminotransferase with new substrate specificities
journal, May 1998
- Yano, T.; Oue, S.; Kagamiyama, H.
- Proceedings of the National Academy of Sciences, Vol. 95, Issue 10
Identification of a functionally important carboxyl group in cellobiohydrolase I from Trichoderma reesei: A chemical modification study
journal, January 1989
- Tomme, Peter; Claeyssens, Marc
- FEBS Letters, Vol. 243, Issue 2
Prediction of protein function from protein sequence and structure
journal, January 1999
- Whisstock, James C.; Lesk, Arthur M.
- Quarterly Reviews of Biophysics, Vol. 36, Issue 3, p. 307-340
Site-Directed Mutagenesis and Expression of the Soluble Form of the Family IIIa Cellulose Binding Domain from the Cellulosomal Scaffolding Protein of Clostridium cellulovorans
journal, September 2005
- Murashima, K.; Kosugi, A.; Doi, R. H.
- Journal of Bacteriology, Vol. 187, Issue 20
Toward an aggregated understanding of enzymatic hydrolysis of cellulose: Noncomplexed cellulase systems
journal, November 2004
- Zhang, Yi-Heng Percival; Lynd, Lee R.
- Biotechnology and Bioengineering, Vol. 88, Issue 7, p. 797-824
High-Resolution Capillary Gel Electrophoresis of Reducing Oligosaccharides Labeled with 1-Aminopyrene-3,6,8-trisulfonate
journal, January 1996
- Guttman, András; Chen, Fu-Tai A.; Evangelista, Ramon A.
- Analytical Biochemistry, Vol. 233, Issue 2
Nucleotide sequence of thecelA gene encoding a cellodextrinase ofRuminococcus flavefaciens FD-1
journal, July 1990
- Wang, Wenyen; Thomson, Jennifer A.
- Molecular and General Genetics MGG, Vol. 222, Issue 2-3
Interaction between the endoglucanase CelA and the scaffolding protein CipC of the Clostridium cellulolyticum cellulosome.
journal, January 1996
- Pagès, S.; Belaich, A.; Tardif, C.
- Journal of bacteriology, Vol. 178, Issue 8
Crystal structure of the family 7 endoglucanase I (Cel7B) from Humicola insolens at 2.2 Å resolution and identification of the catalytic nucleophile by trapping of the covalent glycosyl-enzyme intermediate
journal, October 1998
- Mackenzie, Lloyd F.; Sulzenbacher, Gerlind; Divne, Christina
- Biochemical Journal, Vol. 335, Issue 2
Cellulase assay methods: a review
journal, October 1988
- Sharrock, Keith R.
- Journal of Biochemical and Biophysical Methods, Vol. 17, Issue 2
Roles of the Catalytic Domain and Two Cellulose Binding Domains of Thermomonospora fusca E4 in Cellulose Hydrolysis
journal, January 1998
- Irwin, Diana; Shin, Dong-Hoon; Zhang, Sheng
- Journal of Bacteriology, Vol. 180, Issue 7
A Novel, High Performance Enzyme for Starch Liquefaction: DISCOVERY AND OPTIMIZATION OF A LOW pH, THERMOSTABLE α-AMYLASE
journal, May 2002
- Richardson, Toby H.; Tan, Xuqiu; Frey, Gerhard
- Journal of Biological Chemistry, Vol. 277, Issue 29
Hemicellulose bioconversion
journal, May 2003
- Saha, Badal C.
- Journal of Industrial Microbiology and Biotechnology, Vol. 30, Issue 5
Melamine Deaminase and Atrazine Chlorohydrolase: 98 Percent Identical but Functionally Different
journal, April 2001
- Seffernick, J. L.; de Souza, M. L.; Sadowsky, M. J.
- Journal of Bacteriology, Vol. 183, Issue 8, p. 2405-2410
Structure of the beta-glucosidase gene bglA of Clostridium thermocellum. Sequence analysis reveals a superfamily of cellulases and beta-glycosidases including human lactase/phlorizin hydrolase
journal, September 1991
- Grabnitz, Folke; Seiss, Monika; Rucknagel, Karl P.
- European Journal of Biochemistry, Vol. 200, Issue 2
Carbohydrate-binding modules: fine-tuning polysaccharide recognition
journal, September 2004
- Boraston, Alisdair B.; Bolam, David N.; Gilbert, Harry J.
- Biochemical Journal, Vol. 382, Issue 3
Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Lipids
journal, November 1998
- Broun, Pierre; Shanklin, John; Whittle, Ed
- Science, Vol. 282, Issue 5392, p. 1315-1317
An easy colorimetric assay for screening and qualitative assessment of deiodination and dehalogenation by bacterial cultures
journal, June 1999
- Kuritz, T.
- Letters in Applied Microbiology, Vol. 28, Issue 6
Synergistic Effects of Cellulosomal Xylanase and Cellulases from Clostridium cellulovorans on Plant Cell Wall Degradation
journal, March 2003
- Murashima, K.; Kosugi, A.; Doi, R. H.
- Journal of Bacteriology, Vol. 185, Issue 5
The Topology of the Substrate Binding Clefts of Glycosyl Hydrolase Family 10 Xylanases Are Not Conserved
journal, November 1998
- Charnock, Simon J.; Spurway, Tracey D.; Xie, Hefang
- Journal of Biological Chemistry, Vol. 273, Issue 48
Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca
journal, October 1997
- Sakon, Joshua; Irwin, Diana; Wilson, David B.
- Nature Structural Biology, Vol. 4, Issue 10
Basic local alignment search tool
journal, October 1990
- Altschul, Stephen F.; Gish, Warren; Miller, Webb
- Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
A carbohydrate binding module as a diversity-carrying scaffold
journal, February 2004
- Cicortas Gunnarsson, L.; Nordberg Karlsson, E.; Albrekt, A. -S.
- Protein Engineering Design and Selection, Vol. 17, Issue 3
The use of selection in recovery of transgenic targets for mutation analysis
journal, February 1993
- Lundberg, Kelly S.; Kretz, Patricia L.; Scott Provost, G.
- Mutation Research Letters, Vol. 301, Issue 2, p. 99-105
Nucleotide sequence of the Ruminococcus albus SY3 endoglucanase genes ce1A and ce1B
journal, September 1990
- Poole, Debbie M.; Hazlewood, Geoffrey P.; Laurie, Judith I.
- Molecular and General Genetics MGG, Vol. 223, Issue 2
Methods for measuring cellulase activities
journal, January 1988
- Wood, Thomas M.; Bhat, K. Mahalingeshwara
- Methods in Enzymology, Vol. 160, p. 87-112
Comparison of modular and non-modular xylanases as carrier proteins for the efficient secretion of heterologous proteins from Penicillium funiculosum
journal, December 2002
- Alcocer, M. J. C.; Furniss, C. S. M.; Kroon, P. A.
- Applied Microbiology and Biotechnology, Vol. 60, Issue 6
Enzymatic Degradation of Insoluble Carbohydrates. ACS Symposium Series 618. Edited by J. N. Saddler and M. H. Penner. IX and 374 pages, numerous figures and tables. American Chemical Society, Washington, DC, 1995. Price 91.95 $.
journal, January 1997
- Täufel, A.
- Food / Nahrung, Vol. 41, Issue 4
Comparative amino acid sequence analysis of Thermotoga maritima β-glucosidase (BglA) deduced from the nucleotide sequence of the gene indicates distant relationship between β-glucosidases of the BGA family and other families of β-1,4-glycosyl hydrolases
journal, January 1994
- Liebl, Wolfgang; Gabelsberger, Josef; Schleifer, Karl-Heinz
- Molecular and General Genetics MGG, Vol. 242, Issue 1
GEOLOGY:The Next Oil Crisis Looms Large--and Perhaps Close
journal, August 1998
- Kerr, R. A.
- Science, Vol. 281, Issue 5380
Engineered xyloglucan specificity in a carbohydrate-binding module
journal, July 2006
- Gunnarsson, L. C.; Zhou, Q.; Montanier, C.
- Glycobiology, Vol. 16, Issue 12
Cloning and DNA Sequencing of the Genes EncodingClostridium josui Scaffolding Protein CipA and Cellulase CelD and Identification of Their Gene Products as Major Components of the Cellulosome
journal, January 1998
- Kakiuchi, Motohide; Isui, Ayako; Suzuki, Katsuhisa
- Journal of Bacteriology, Vol. 180, Issue 16
Kinetic Measurements of Cellulase Activity on Insoluble Substrates Using Disodium 2,2' Bicinchoninate
journal, September 1998
- Johnston, D. B.; Shoemaker, S. P.; Smith, G. M.
- Journal of Food Biochemistry, Vol. 22, Issue 4
OIL OUTLOOK:USGS Optimistic on World Oil Prospects
journal, July 2000
- Kerr, R. A.
- Science, Vol. 289, Issue 5477
Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice
journal, July 2003
- Kikuchi, S.
- Science, Vol. 301, Issue 5631
Detection and quantitation of cellulase by Congo red staining of substrates in a cup-plate diffusion assay
journal, February 1986
- Carder, John H.
- Analytical Biochemistry, Vol. 153, Issue 1
Biochemical characterization and mode of action of a thermostable endoglucanase purified from Thermoascus aurantiacus
journal, August 2002
- Parry, N. J.; Beever, D. E.; Owen, E.
- Archives of Biochemistry and Biophysics, Vol. 404, Issue 2
A cellulase assay coupled to cellobiose dehydrogenase
journal, June 1985
- Canevascini, Giorgio
- Analytical Biochemistry, Vol. 147, Issue 2
Estimation of cellulase activity using a glucose-oxidase-Cu(II) reducing assay for glucose
journal, December 1991
- Baker, Warren L.; Panow, Adrian
- Journal of Biochemical and Biophysical Methods, Vol. 23, Issue 4
Microbial hemicellulases
journal, June 2003
- Shallom, Dalia; Shoham, Yuval
- Current Opinion in Microbiology, Vol. 6, Issue 3, p. 219-228
Ethanol fermentation from biomass resources: current state and prospects
journal, December 2005
- Lin, Yan; Tanaka, Shuzo
- Applied Microbiology and Biotechnology, Vol. 69, Issue 6
Biotechnological applications of phage and cell display
journal, February 2001
- Benhar, Itai
- Biotechnology Advances, Vol. 19, Issue 1, p. 1-33
A newly described cellulosomal cellobiohydrolase, CelO, from Clostridium thermocellum: investigation of the exo-mode of hydrolysis, and binding capacity to crystalline cellulose
journal, January 2002
- Schwarz, Wolfgang H.; Velikodvorskaya, Galina A.; Zverlov, Vladimir V.
- Microbiology, Vol. 148, Issue 1
λ ZAP: a bacteriophage λ expression vector with in vivo excision properties
journal, January 1988
- Short, Jay M.; Fernandez, Joseph M.; Sorge, Joseph A.
- Nucleic Acids Research, Vol. 16, Issue 15
Consolidated bioprocessing of cellulosic biomass: an update
journal, October 2005
- Lynd, Lee R.; van Zyl, Willem H.; McBride, John E.
- Current Opinion in Biotechnology, Vol. 16, Issue 5, p. 577-583
Rapid Evolution of Reversible Denaturation and Elevated Melting Temperature in a Microbial Haloalkane Dehalogenase
journal, August 2001
- Gray, Kevin A.; Richardson, Toby H.; Kretz, Keith
- Advanced Synthesis & Catalysis, Vol. 343, Issue 6-7, p. 607-617
Sensitive assay for cellulase and dextranase
journal, June 1976
- Huang, Jung San; Tang, Jordan
- Analytical Biochemistry, Vol. 73, Issue 2
The Cellulosome: The Exocellular Organelle of Clostridium
journal, October 1993
- Felix, C. R.; Ljungdahl, L. G.
- Annual Review of Microbiology, Vol. 47, Issue 1
Protein tolerance to random amino acid change
journal, June 2004
- Guo, H. H.; Choe, J.; Loeb, L. A.
- Proceedings of the National Academy of Sciences, Vol. 101, Issue 25, p. 9205-9210
Characterization and Disruption of A Gene in the Maize Pathogen Cochliobolus carbonum Encoding a Cellulase Lacking a Cellulose Binding Domain and Hinge Region
journal, January 1995
- Sposato, Paola
- Molecular Plant-Microbe Interactions, Vol. 8, Issue 4
Crystal structure of the catalytic core domain of the family 6 cellobiohydrolase II, Cel6A, from Humicola insolens, at 1.92 Å resolution
journal, January 1999
- Varrot, Annabelle; Hastrup, Sven; SchÜLein, Martin
- Biochemical Journal, Vol. 337, Issue 2
Cello-Oligosaccharide Hydrolysis by Cellobiohydrolase II from Trichoderma Reesei. Association and Rate Constants Derived from an Analysis of Progress Curves
journal, September 1996
- Harjunpaa, Vesa; Teleman, Anita; Koivula, Anu
- European Journal of Biochemistry, Vol. 240, Issue 3
