Isolated polypeptide having arabinofuranosidase activity
Abstract
Described herein are novel gene sequences isolated from Trichoderma reesei. Two genes encoding proteins comprising a cellulose binding domain, one encoding an arabionfuranosidase and one encoding an acetylxylanesterase are described. The sequences, CIP1 and CIP2, contain a cellulose binding domain. These proteins are especially useful in the textile and detergent industry and in pulp and paper industry. TABLE-US-00001 cip1 cDNA sequence (SEQ ID NO: 1) GACTAGTTCA TAATACAGTA GTTGAGTTCA TAGCAACTTC 50 ACTCTCTAGC TGAACAAATT ATCTGCGCAA ACATGGTTCG CCGGACTGCT 100 CTGCTGGCCC TTGGGGCTCT CTCAACGCTC TCTATGGCCC AAATCTCAGA 150 CGACTTCGAG TCGGGCTGGG ATCAGACTAA ATGGCCCATT TCGGCACCAG 200 ACTGTAACCA GGGCGGCACC GTCAGCCTCG ACACCACAGT AGCCCACAGC 250 GGCAGCAACT CCATGAAGGT CGTTGGTGGC CCCAATGGCT ACTGTGGACA 300 CATCTTCTTC GGCACTACCC AGGTGCCAAC TGGGGATGTA TATGTCAGAG 350 CTTGGATTCG GCTTCAGACT GCTCTCGGCA GCAACCACGT CACATTCATC 400 ATCATGCCAG ACACCGCTCA GGGAGGGAAG CACCTCCGAA TTGGTGGCCA 450 AAGCCAAGTT CTCGACTACA ACCGCGAGTC CGACGATGCC ACTCTTCCGG 500 ACCTGTCTCC CAACGGCATT GCCTCCACCG TCACTCTGCC TACCGGCGCG 550 TTCCAGTGCT TCGAGTACCA CCTGGGCACT GACGGAACCA TCGAGACGTG 600 GCTCAACGGC AGCCTCATCC CGGGCATGAC CGTGGGCCCT GGCGTCGACA 650 ATCCAAACGA CGCTGGCTGG ACGAGGGCCA GCTATATTCC GGAGATCACC 700 GGTGTCAACT TTGGCTGGGA GGCCTACAGC GGAGACGTCA ACACCGTCTG 750 GTTCGACGAC ATCTCGATTG CGTCGACCCG CGTGGGATGC GGCCCCGGCA 800 GCCCCGGCGG TCCTGGAAGC TCGACGACTG GGCGTAGCAG CACCTCGGGC 850 CCGACGAGCA CTTCGAGGCC AAGCACCACC ATTCCGCCAC CGACTTCCAG 900 GACAACGACC GCCACGGGTC CGACTCAGAC ACACTATGGC CAGTGCGGAG 1000 GGATTGGTTA CAGCGGGCCT ACGGTCTGCG CGAGCGGCAC GACCTGCCAG 1050 GTCCTGAACC CATACTACTC CCAGTGCTTA TAAGGGGATG AGCATGGAGT 1100 GAAGTGAAGT GAAGTGGAGA GAGTTGAAGT GGCATTGCGC TCGGCTGGGT 1150 AGATAAAAGT CAGCAGCTAT GAATACTCTA TGTGATGCTCmore »
- Inventors:
-
- Palo Alto, CA
- Naaldwijk, NL
- Vlaardingen, NL
- Issue Date:
- Research Org.:
- Danisco US Inc. (Palo Alto, CA)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1014180
- Patent Number(s):
- 7666648
- Application Number:
- US Patent Application 10/555,358
- Assignee:
- Danisco US Inc. (Palo Alto, CA)
- Patent Classifications (CPCs):
-
C - CHEMISTRY C07 - ORGANIC CHEMISTRY C07K - PEPTIDES
C - CHEMISTRY C11 - ANIMAL OR VEGETABLE OILS, FATS, FATTY SUBSTANCES OR WAXES C11D - DETERGENT COMPOSITIONS
- DOE Contract Number:
- AC36-99GO10337
- Resource Type:
- Patent
- Country of Publication:
- United States
- Language:
- English
Citation Formats
Foreman, Pamela, Van Solingen, Pieter, Goedegebuur, Frits, and Ward, Michael. Isolated polypeptide having arabinofuranosidase activity. United States: N. p., 2010.
Web.
Foreman, Pamela, Van Solingen, Pieter, Goedegebuur, Frits, & Ward, Michael. Isolated polypeptide having arabinofuranosidase activity. United States.
Foreman, Pamela, Van Solingen, Pieter, Goedegebuur, Frits, and Ward, Michael. Tue .
"Isolated polypeptide having arabinofuranosidase activity". United States. https://www.osti.gov/servlets/purl/1014180.
@article{osti_1014180,
title = {Isolated polypeptide having arabinofuranosidase activity},
author = {Foreman, Pamela and Van Solingen, Pieter and Goedegebuur, Frits and Ward, Michael},
abstractNote = {Described herein are novel gene sequences isolated from Trichoderma reesei. Two genes encoding proteins comprising a cellulose binding domain, one encoding an arabionfuranosidase and one encoding an acetylxylanesterase are described. The sequences, CIP1 and CIP2, contain a cellulose binding domain. These proteins are especially useful in the textile and detergent industry and in pulp and paper industry. TABLE-US-00001 cip1 cDNA sequence (SEQ ID NO: 1) GACTAGTTCA TAATACAGTA GTTGAGTTCA TAGCAACTTC 50 ACTCTCTAGC TGAACAAATT ATCTGCGCAA ACATGGTTCG CCGGACTGCT 100 CTGCTGGCCC TTGGGGCTCT CTCAACGCTC TCTATGGCCC AAATCTCAGA 150 CGACTTCGAG TCGGGCTGGG ATCAGACTAA ATGGCCCATT TCGGCACCAG 200 ACTGTAACCA GGGCGGCACC GTCAGCCTCG ACACCACAGT AGCCCACAGC 250 GGCAGCAACT CCATGAAGGT CGTTGGTGGC CCCAATGGCT ACTGTGGACA 300 CATCTTCTTC GGCACTACCC AGGTGCCAAC TGGGGATGTA TATGTCAGAG 350 CTTGGATTCG GCTTCAGACT GCTCTCGGCA GCAACCACGT CACATTCATC 400 ATCATGCCAG ACACCGCTCA GGGAGGGAAG CACCTCCGAA TTGGTGGCCA 450 AAGCCAAGTT CTCGACTACA ACCGCGAGTC CGACGATGCC ACTCTTCCGG 500 ACCTGTCTCC CAACGGCATT GCCTCCACCG TCACTCTGCC TACCGGCGCG 550 TTCCAGTGCT TCGAGTACCA CCTGGGCACT GACGGAACCA TCGAGACGTG 600 GCTCAACGGC AGCCTCATCC CGGGCATGAC CGTGGGCCCT GGCGTCGACA 650 ATCCAAACGA CGCTGGCTGG ACGAGGGCCA GCTATATTCC GGAGATCACC 700 GGTGTCAACT TTGGCTGGGA GGCCTACAGC GGAGACGTCA ACACCGTCTG 750 GTTCGACGAC ATCTCGATTG CGTCGACCCG CGTGGGATGC GGCCCCGGCA 800 GCCCCGGCGG TCCTGGAAGC TCGACGACTG GGCGTAGCAG CACCTCGGGC 850 CCGACGAGCA CTTCGAGGCC AAGCACCACC ATTCCGCCAC CGACTTCCAG 900 GACAACGACC GCCACGGGTC CGACTCAGAC ACACTATGGC CAGTGCGGAG 1000 GGATTGGTTA CAGCGGGCCT ACGGTCTGCG CGAGCGGCAC GACCTGCCAG 1050 GTCCTGAACC CATACTACTC CCAGTGCTTA TAAGGGGATG AGCATGGAGT 1100 GAAGTGAAGT GAAGTGGAGA GAGTTGAAGT GGCATTGCGC TCGGCTGGGT 1150 AGATAAAAGT CAGCAGCTAT GAATACTCTA TGTGATGCTC ATTGGCGTGT 1200 ACGTTTTAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 1250 AAAAAAAAAA AAAAAAAAAG GGGGCGGCCG C 1271},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2010},
month = {2}
}
Works referenced in this record:
Ion-exchange chromatographic purification and quantitative analysis of Trichoderma reesei cellulases cellobiohydrolase I, II and endoglucanase II by fast protein liquid chromatography
journal, May 1998
- Medve, József; Lee, Dora; Tjerneld, Folke
- Journal of Chromatography A, Vol. 808, Issue 1-2, p. 153-165
Acetyl Xylan Esterase from Trichoderma reesei Contains an Active-Site Serine Residue and a Cellulose-Binding Domain
journal, May 1996
- Margolles-Clark, Emilio; Tenkanen, Maija; Soderlund, Hans
- European Journal of Biochemistry, Vol. 237, Issue 3
Characteristics of fungal cellulases
journal, January 1991
- Goyal, Anil; Ghosh, Bijan; Eveleigh, Douglas
- Bioresource Technology, Vol. 36, Issue 1, p. 37-50
α-l-Arabinofuranosidases
journal, August 2000
- Saha, Badal C.
- Biotechnology Advances, Vol. 18, Issue 5
Separation of endo- and exo-type cellulases using a new affinity chromatography method
journal, April 1984
- van Tilbeurgh, Herman; Bhikhabhai, Ramagauri; Göran Pettersson, L.
- FEBS Letters, Vol. 169, Issue 2, p. 215-218
Characterization of cellulases by HPLC separation
journal, January 1983
- Fliess, A.; Schügerl, K.
- European Journal of Applied Microbiology and Biotechnology, Vol. 17, Issue 5, p. 314-318
Developments in Directed Evolution for Improving Enzyme Functions
journal, August 2007
- Sen, S.; Venkata Dasu, V.; Mandal, B.
- Applied Biochemistry and Biotechnology, Vol. 143, Issue 3, p. 212-223
Acetyl xylan esterase II from Penicillium purpurogenum is similar to an esterase from Trichoderma reesei but lacks a cellulose binding domain
journal, February 1998
- Gutiérrez, Rodrigo; Cederlund, Ella; Hjelmqvist, Lars
- FEBS Letters, Vol. 423, Issue 1
Cloning and relational analysis of 15 novel fungal endoglucanases from family 12 glycosyl hydrolase
journal, May 2002
- Goedegebuur, Frits; Fowler, Timothy; Phillips, Jay
- Current Genetics, Vol. 41, Issue 2, p. 89-98
Antibodies specific for the human retinoblastoma protein identify a family of related polypeptides.
journal, November 1991
- Hu, Q. J.; Bautista, C.; Edwards, G. M.
- Molecular and Cellular Biology, Vol. 11, Issue 11, p. 5792-5799
Codon optimization of xylanase gene xynB from the thermophilic bacterium Dictyoglomus thermophilum for expression in the filamentous fungus Trichoderma reesei
journal, September 2000
- Te'o, Valentino S.J.; Cziferszky, Angela E.; Bergquist, Peter L.
- FEMS Microbiology Letters, Vol. 190, Issue 1, p. 13-19
Acetyl xylan esterases in fungal cellulolytic systems
journal, July 1985
- Biely, Peter; Puls, Jürgen; Schneider, Henry
- FEBS Letters, Vol. 186, Issue 1
Use of Aspergillus overproducing mutants, cured for intergrated plasmid, to overproduce heterologous proteins
journal, August 1993
- Ward, Michael; Wilson, Lori J.; Kodama, Katherine H.
- Applied Microbiology and Biotechnology, Vol. 39, Issue 6, p. 738-743
Sequence of the cloned pyr4 gene of Trichoderma reesei and its use as a homologous selectable marker for transformation
journal, January 1991
- Smith, Jeffrey L.; Bayliss, Frank T.; Ward, Michael
- Current Genetics, Vol. 19, Issue 1
Transcriptional Regulation of Biomass-degrading Enzymes in the Filamentous Fungus Trichoderma reesei
journal, June 2003
- Foreman, Pamela K.; Brown, Doug; Dankmeyer, Lydia
- Journal of Biological Chemistry, Vol. 278, Issue 34, p. 31988-31997
An α-l-Arabinofuranosidase fromTrichoderma reesei Containing a Noncatalytic Xylan-Binding Domain
journal, September 1999
- Nogawa, Masahiro; Yatsui, Kenji; Tomioka, Akiko
- Applied and Environmental Microbiology, Vol. 65, Issue 9
Fractionation of cellulase and β-glucosidase in a Trichoderma reesei culture liquid by use of two-phase partitioning
journal, November 1999
- Brumbauer, Anikó; Johansson, Göte; Réczey, Kati
- Bioseparation, Vol. 7, Issue 6, p. 287-295
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
journal, September 1997
- Altschul, Stephen F.; Madden, Thomas L.; Schäffer, Alejandro A.
- Nucleic Acids Research, Vol. 25, Issue 17, p. 3389-3402
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
journal, August 1993
- Henrissat, B.; Bairoch, A.
- Biochemical Journal, Vol. 293, Issue 3, p. 781-788
Analytical separation of Trichoderma reesei cellulases by ion-exchange fast protein liquid chromatography
journal, January 1987
- Ellouz, S.; Durand, H.; Tiraby, G.
- Journal of Chromatography A, Vol. 396, p. 307-317
Cloning of genes encoding alpha-L-arabinofuranosidase and beta-xylosidase from Trichoderma reesei by expression in Saccharomyces cerevisiae.
journal, January 1996
- Margolles-Clark, E.; Tenkanen, M.; Nakari-Setälä, T.
- Applied and environmental microbiology, Vol. 62, Issue 10
A complete protein pattern of cellulase and hemicellulase genes in the filamentous fungusTrichoderma reesei
journal, November 2006
- Ouyang, Jia; Yan, Ming; Kong, Dechong
- Biotechnology Journal, Vol. 1, Issue 11
Structures and mechanisms of glycosyl hydrolases
journal, September 1995
- Davies, Gideon; Henrissat, Bernard
- Structure, Vol. 3, Issue 9
Characterization of the secreted cellulases of Trichoderma reesei wild type and mutants during controlled fermentations
journal, July 1984
- Sheir-Neiss, G.; Montenecourt, B. S.
- Applied Microbiology and Biotechnology, Vol. 20, Issue 1, p. 46-53
Structure of Cellulases and Their Applications
journal, April 1997
- Ohmiya, Kunio; Sakka, Kazuo; Karita, Shuichi
- Biotechnology and Genetic Engineering Reviews, Vol. 14, Issue 1, p. 365-414
Identification of genes encoding microbial glucuronoyl esterases
journal, July 2007
- Li, Xin-Liang; Špániková, Silvia; de Vries, Ronald P.
- FEBS Letters, Vol. 581, Issue 21
Molecular Cloning of Exo–Cellobiohydrolase I Derived from Trichoderma Reesei Strain L27
journal, October 1983
- Shoemaker, S.; Schweickart, V.; Ladner, M.
- Nature Biotechnology, Vol. 1, Issue 8, p. 691-696
[79] Purification of all glycolytic enzymes from one muscle extract
journal, January 1982
- Scopes, Robert K.; Stoter, Ann
- Methods in Enzymology, Vol. 90, p. 479-490
A classification of glycosyl hydrolases based on amino acid sequence similarities
journal, December 1991
- Henrissat, B.
- Biochemical Journal, Vol. 280, Issue 2
[57] Rethinking your purification procedure
book, January 1990
- Deutscher, Murray P.
- Guide to Protein Purification
Studies on the chromatographic fractionation of Trichoderma reesei cellulases by hydrophobic interaction
journal, December 1999
- Tomaz, Cândida T.; Queiroz, João A.
- Journal of Chromatography A, Vol. 865, Issue 1-2, p. 123-128
Simultaneous saccharification and fermentation of lignocellulosic wastes to ethanol using a thermotolerant yeast
journal, April 2001
- Hari Krishna, S.; Janardhan Reddy, T.; Chowdary, G. V.
- Bioresource Technology, Vol. 77, Issue 2, p. 193-196