Compositions of orthogonal lysyl-tRNA and aminoacyl-tRNA synthetase pairs and uses thereof
Abstract
Compositions and methods of producing components of protein biosynthetic machinery that include orthogonal lysyl-tRNAs, orthogonal lysyl-aminoacyl-tRNA synthetases, and orthogonal pairs of lysyl-tRNAs/synthetases, which incorporate homoglutamines into proteins are provided in response to a four base codon. Methods for identifying these orthogonal pairs are also provided along with methods of producing proteins with homoglutamines using these orthogonal pairs.
- Inventors:
-
- San Francisco, CA
- Brookline, MA
- Cambridge, MA
- La Jolla, CA
- Issue Date:
- Research Org.:
- The Scripps Research Inst., La Jolla, CA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1013813
- Patent Number(s):
- 7638297
- Application Number:
- US Patent Application 10/563,686
- Assignee:
- The Scripps Research Institute (La Jolla, CA)
- Patent Classifications (CPCs):
-
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
C - CHEMISTRY C12 - BIOCHEMISTRY C12P - FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE {
- DOE Contract Number:
- FG03-00ER45812
- Resource Type:
- Patent
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Anderson, J Christopher, Wu, Ning, Santoro, Stephen, and Schultz, Peter G. Compositions of orthogonal lysyl-tRNA and aminoacyl-tRNA synthetase pairs and uses thereof. United States: N. p., 2009.
Web.
Anderson, J Christopher, Wu, Ning, Santoro, Stephen, & Schultz, Peter G. Compositions of orthogonal lysyl-tRNA and aminoacyl-tRNA synthetase pairs and uses thereof. United States.
Anderson, J Christopher, Wu, Ning, Santoro, Stephen, and Schultz, Peter G. Tue .
"Compositions of orthogonal lysyl-tRNA and aminoacyl-tRNA synthetase pairs and uses thereof". United States. https://www.osti.gov/servlets/purl/1013813.
@article{osti_1013813,
title = {Compositions of orthogonal lysyl-tRNA and aminoacyl-tRNA synthetase pairs and uses thereof},
author = {Anderson, J Christopher and Wu, Ning and Santoro, Stephen and Schultz, Peter G},
abstractNote = {Compositions and methods of producing components of protein biosynthetic machinery that include orthogonal lysyl-tRNAs, orthogonal lysyl-aminoacyl-tRNA synthetases, and orthogonal pairs of lysyl-tRNAs/synthetases, which incorporate homoglutamines into proteins are provided in response to a four base codon. Methods for identifying these orthogonal pairs are also provided along with methods of producing proteins with homoglutamines using these orthogonal pairs.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2009},
month = {12}
}
Works referenced in this record:
Four-base codons ACCA, ACCU and ACCC are recognized by frameshift suppressor sufJ
journal, August 1981
- Bossi, Lionello; Roth, John R.
- Cell, Vol. 25, Issue 2, p. 489-496
Exploring the Limits of Codon and Anticodon Size
journal, February 2002
- Anderson, J. Christopher; Magliery, Thomas J.; Schultz, Peter G.
- Chemistry & Biology, Vol. 9, Issue 2, p. 237-244
Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion
journal, May 2003
- Kobayashi, Takatsugu; Nureki, Osamu; Ishitani, Ryuichiro
- Nature Structural & Molecular Biology, Vol. 10, Issue 6
Insertions in the anticodon loop of tRNA1Gln(sufG) and tRNALys promote quadruplet decoding of CAAA
journal, May 2002
- O'Connor, M.
- Nucleic Acids Research, Vol. 30, Issue 9
Substrate recognition by class I lysyl-tRNA synthetases: A molecular basis for gene displacement
journal, January 1999
- Ibba, M.; Losey, H. C.; Kawarabayasi, Y.
- Proceedings of the National Academy of Sciences, Vol. 96, Issue 2
Actions of the anticodon arm in translation on the phenotypes of RNA mutants
journal, November 1986
- Yarus, M.; Cline, S. W.; Wier, P.
- Journal of Molecular Biology, Vol. 192, Issue 2, p. 235-255
An expanded genetic code with a functional quadruplet codon
journal, May 2004
- Anderson, J. C.; Wu, N.; Santoro, S. W.
- Proceedings of the National Academy of Sciences, Vol. 101, Issue 20, p. 7566-7571
Generation of a Bacterium with a 21 Amino Acid Genetic Code
journal, January 2003
- Mehl, Ryan A.; Anderson, J. Christopher; Santoro, Stephen W.
- Journal of the American Chemical Society, Vol. 125, Issue 4, p. 935-939
An archaebacteria-derived glutamyl-tRNA synthetase and tRNA pair for unnatural amino acid mutagenesis of proteins in Escherichia coli
journal, December 2003
- Santoro, S. W.
- Nucleic Acids Research, Vol. 31, Issue 23
An Expanded Eukaryotic Genetic Code
journal, August 2003
- Chin, Jason W.; Cropp, T. Ashton; Anderson, J. Christopher
- Science, Vol. 301, Issue 5635, p. 964-967
Introduction of unnatural amino acids into chalcone isomerase
journal, July 1991
- Bednar, Rodney A.; McCaffrey, Catherine; Shan, Kaiyu
- Bioconjugate Chemistry, Vol. 2, Issue 4
Adaptation of an Orthogonal Archaeal Leucyl-tRNA and Synthetase Pair for Four-base, Amber, and Opal Suppression †
journal, August 2003
- Anderson, J. Christopher; Schultz, Peter G.
- Biochemistry, Vol. 42, Issue 32
Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli
journal, August 2002
- Chin, J. W.; Martin, A. B.; King, D. S.
- Proceedings of the National Academy of Sciences, Vol. 99, Issue 17, p. 11020-11024
Expanding the genetic code: selection of efficient suppressors of four-base codons and identification of “shifty” four-base codons with a library approach in Escherichia coli
journal, March 2001
- Magliery, Thomas J.; Anderson, J. Christopher; Schultz, Peter G.
- Journal of Molecular Biology, Vol. 307, Issue 3, p. 755-769
An efficient system for the evolution of aminoacyl-tRNA synthetase specificity
journal, September 2002
- Santoro, Stephen W.; Wang, Lei; Herberich, Brad
- Nature Biotechnology, Vol. 20, Issue 10
Functional Annotation of Class I Lysyl-tRNA Synthetase Phylogeny Indicates a Limited Role for Gene Transfer
journal, August 2002
- Ambrogelly, A.; Korencic, D.; Ibba, M.
- Journal of Bacteriology, Vol. 184, Issue 16
Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3
journal, January 1998
- Kawarabayasi, Y.
- DNA Research, Vol. 5, Issue 2
Incorporation of non-natural amino acids into proteins
journal, December 2002
- Hohsaka, Takahiro; Sisido, Masahiko
- Current Opinion in Chemical Biology, Vol. 6, Issue 6
A New Functional Suppressor tRNA/Aminoacyl−tRNA Synthetase Pair for the in Vivo Incorporation of Unnatural Amino Acids into Proteins
journal, May 2000
- Wang, Lei; Magliery, Thomas J.; Liu, David R.
- Journal of the American Chemical Society, Vol. 122, Issue 20, p. 5010-5011
Incorporation of two nonnatural amino acids into proteins through extension of the genetic code
journal, November 1999
- Hohsaka, T.; Ashizuka, Y.; Sisido, M.
- Nucleic Acids Symposium Series, Vol. 42, Issue 1
Functional convergence of two lysyl-tRNA synthetases with unrelated topologies
journal, March 2002
- Terada, Takaho; Nureki, Osamu; Ishitani, Ryuichiro
- Nature Structural Biology, Vol. 9, Issue 4
An expanding genetic code
journal, December 2004
- Cropp, T. Ashton; Schultz, Peter G.
- Trends in Genetics, Vol. 20, Issue 12, p. 625-630
Adding new meanings to the genetic code
journal, June 2001
- Mejlhede, Nina; Nielsen, Peter E.; Ibba, Michael
- Nature Biotechnology, Vol. 19, Issue 6
Five-base codons for incorporation of nonnatural amino acids into proteins
journal, September 2001
- Hohsaka, Takahiro; Ashizuka, Yuki; Murakami, Hiroshi
- Nucleic Acids Research, Vol. 29, Issue 17, p. 3646-3651
Evolutionary relationship between Halobacterium cutirubrum and eukaryotes determined by use of aminoacyl-tRNA synthetases as phylogenetic probes
journal, March 1980
- Kwok, Yau; Wong, J. Tze-Fei
- Canadian Journal of Biochemistry, Vol. 58, Issue 3
Addition of the keto functional group to the genetic code of Escherichia coli
journal, December 2002
- Wang, L.; Zhang, Z.; Brock, A.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 1, p. 56-61
Expanding the Genetic Code of Escherichia coli
journal, April 2001
- Wang, L.; Brock, A.; Herberich, B.
- Science, Vol. 292, Issue 5516, p. 498-500
Reading frame selection and transfer RNA anticodon loop stacking
journal, December 1987
- Curran, J.; Yarus, M.
- Science, Vol. 238, Issue 4833
Novel transfer RNAs that are active in Escherichia coli
journal, May 1992
- Hou, Ya Ming; Schimmel, Paul
- Biochemistry, Vol. 31, Issue 17
Expansion of the genetic code: Site-directed p-fluoro-phenylalanine incorporation in Escherichia coli
journal, February 1998
- Furter, Rolf
- Protein Science, Vol. 7, Issue 2, p. 419-426