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PeptideListToXML

RESOURCE

Publicly Accessible Repository
https://github.com/PNNL-Comp-Mass-Spec/PeptideListToXML
https://doi.org/10.11578/dc.20180319.63

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Abstract

The PeptideListToXML application reads a tab-delimited text file created by the Peptide Hit Results Processor (PHRP) and creates a PepXML with the appropriate information. The various _SeqInfo files created by PHRP must be present in the same folder as the text file. If the MASIC Scan Stats file is also present, then elution time information will be extracted and included in the PepXML file. You should ideally also include the name of the parameter file used for the MS/MS search engine.
Developers:
Monroe, Matthew [1]
  1. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Release Date:
2018-02-21
Project Type:
Open Source, Publicly Available Repository
Software Type:
Scientific
Licenses:
Apache License 2.0
Sponsoring Org.:
Code ID:
8613
Research Org.:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Country of Origin:
United States

RESOURCE

Publicly Accessible Repository
https://github.com/PNNL-Comp-Mass-Spec/PeptideListToXML
https://doi.org/10.11578/dc.20180319.63

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PNNL Badge

Citation Formats

Monroe, Matthew. PeptideListToXML. Computer Software. https://github.com/PNNL-Comp-Mass-Spec/PeptideListToXML. USDOE. 21 Feb. 2018. Web. doi:10.11578/dc.20180319.63.
Monroe, Matthew. (2018, February 21). PeptideListToXML. [Computer software]. https://github.com/PNNL-Comp-Mass-Spec/PeptideListToXML. https://doi.org/10.11578/dc.20180319.63.
Monroe, Matthew. "PeptideListToXML." Computer software. February 21, 2018. https://github.com/PNNL-Comp-Mass-Spec/PeptideListToXML. https://doi.org/10.11578/dc.20180319.63.
@misc{ doecode_8613,
title = {PeptideListToXML},
author = {Monroe, Matthew},
abstractNote = {The PeptideListToXML application reads a tab-delimited text file created by the Peptide Hit Results Processor (PHRP) and creates a PepXML with the appropriate information. The various _SeqInfo files created by PHRP must be present in the same folder as the text file. If the MASIC Scan Stats file is also present, then elution time information will be extracted and included in the PepXML file. You should ideally also include the name of the parameter file used for the MS/MS search engine.},
doi = {10.11578/dc.20180319.63},
url = {https://doi.org/10.11578/dc.20180319.63},
howpublished = {[Computer Software] \url{https://doi.org/10.11578/dc.20180319.63}},
year = {2018},
month = {feb}
}