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Peptide Hit Results Processor

RESOURCE

Publicly Accessible Repository
https://github.com/PNNL-Comp-Mass-Spec/PHRP
https://doi.org/10.11578/dc.20180319.56

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Abstract

The Peptide Hit Results Processor (PHRP) can be used to convert an X!Tandem results file (XML format), MSGF+ .tsv search result file, Sequest Synopsis/First Hits file, or Inspect search result into a series of tab-delimited text files summarizing the results. It will insert modification symbols into the peptide sequences for modified peptides. Parallel files are created containing sequence information, modification details, and protein information. The user can optionally provide a modification definition file that specifies the symbol to use for each modification mass.
Developers:
Gibbons, Bryson ;  Monroe, Matthew [1]
  1. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Release Date:
2018-02-21
Project Type:
Open Source, Publicly Available Repository
Software Type:
Scientific
Licenses:
Apache License 2.0
Sponsoring Org.:
Code ID:
8586
Research Org.:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Country of Origin:
United States

RESOURCE

Publicly Accessible Repository
https://github.com/PNNL-Comp-Mass-Spec/PHRP
https://doi.org/10.11578/dc.20180319.56

SAVE / SHARE



PNNL Badge

Citation Formats

Gibbons, Bryson, and Monroe, Matthew. Peptide Hit Results Processor. Computer Software. https://github.com/PNNL-Comp-Mass-Spec/PHRP. USDOE. 21 Feb. 2018. Web. doi:10.11578/dc.20180319.56.
Gibbons, Bryson, & Monroe, Matthew. (2018, February 21). Peptide Hit Results Processor. [Computer software]. https://github.com/PNNL-Comp-Mass-Spec/PHRP. https://doi.org/10.11578/dc.20180319.56.
Gibbons, Bryson, and Monroe, Matthew. "Peptide Hit Results Processor." Computer software. February 21, 2018. https://github.com/PNNL-Comp-Mass-Spec/PHRP. https://doi.org/10.11578/dc.20180319.56.
@misc{ doecode_8586,
title = {Peptide Hit Results Processor},
author = {Gibbons, Bryson and Monroe, Matthew},
abstractNote = {The Peptide Hit Results Processor (PHRP) can be used to convert an X!Tandem results file (XML format), MSGF+ .tsv search result file, Sequest Synopsis/First Hits file, or Inspect search result into a series of tab-delimited text files summarizing the results. It will insert modification symbols into the peptide sequences for modified peptides. Parallel files are created containing sequence information, modification details, and protein information. The user can optionally provide a modification definition file that specifies the symbol to use for each modification mass.},
doi = {10.11578/dc.20180319.56},
url = {https://doi.org/10.11578/dc.20180319.56},
howpublished = {[Computer Software] \url{https://doi.org/10.11578/dc.20180319.56}},
year = {2018},
month = {feb}
}