KS4A-Omics1.0_FspDS682

Anderson, Lindsey N; Bhattacharjee, Arunima; Richardson, Jocelyn R; Bramer, Lisa M; Qafoku, Odeta; Zhu, Zihua; Bowden, Mark E; Engelhard, Mark H; Nelson, William C; Hofmockel, Kirsten S; Jansson, Janet K; Anderton, Christopher R; McDermott, Jason; Smith, Ian; Hofmockel, Michael

doi:10.25584/KSOmicsFspDS682/1766303

Title: KS4A-Omics1.0_FspDS682 (in EN)

Abstract

Soil fungi facilitate the translocation of inorganic nutrients from soil minerals to other microorganisms and plants. This ability is particularly advantageous in impoverished soils, because fungal mycelial networks can bridge otherwise spatially disconnected and inaccessible nutrient hotspots. However, the molecular mechanisms underlying fungal mineral weathering and transport through soil remains poorly understood. Here, we addressed this knowledge gap by directly visualizing nutrient acquisition and transport through fungal hyphae in a mineral doped soil micromodel using a multimodal imaging approach. Here, we observed how a representative of common saprotrophic soil fungi, Fusarium sp. DS 682, exhibited a mechanosensory response (thigmotropism) around obstacles and through pore spaces (~12 μm) in the presence of minerals.This study establishes the significance of fungal biology and nutrient translocation mechanisms in maintaining fungal growth under water and nutrient limitations in a soil-like microenvironment, using a high-throughput multi-omic analysis approach. Data package KS4A-Omics.1.0_FspDS682 (Publication: Fungal Mineral Weathering Mechanisms Revealed Through Direct Molecular Visualization) contents reported here are the first version (1.0) and contain pre- and post-processed data using high throughput data capture technologies for multi-omic analysis and integration, this data package contains raw and post-processed experimental data for X-Ray Absorption Near Edge Structure Spectroscopy (XANES/XRF), Optical Microscopy, Proteomics,more »« less

Authors:

;

; McDermott, Jason; Smith, Ian; Hofmockel, Michael

Pacific Northwest National Laboratory, Biological Sciences Division (EBSD), PNNL Soil Microbiome SFA Project
SLAC National Accelerator Laboratory
Pacific Northwest National Laboratory, EMSL

Contributors:

Other:

;

Pacific Northwest National Laboratory, Biological Sciences Division (EBSD), PNNL Soil Microbiome SFA Project
Pacific Northwest National Laboratory DataHub (https://data.pnnl.gov/), pnnl2

Publication Date:: 2021-04-20

Other Number(s):: 13432

DOE Contract Number:: AC05-76RLO1830; AC02-76SF00515

Research Org.:: Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

Sponsoring Org.:: SC-23

Subject:: 54 ENVIRONMENTAL SCIENCES; 59 BASIC BIOLOGICAL SCIENCES; 47 OTHER INSTRUMENTATION

Keywords:: Fusarium sp. DS 682; Microscopy; Spectroscopy; Mass Spectrometry; Multi-Omics; Data Package DOI

Geolocation:: 39.08, 96.61

OSTI Identifier:: 1766303

DOI:: https://doi.org/10.25584/KSOmicsFspDS682/1766303

Project Location:

Citation Formats


                    Anderson, Lindsey N, Bhattacharjee, Arunima, Richardson, Jocelyn R, Bramer, Lisa M, Qafoku, Odeta, Zhu, Zihua, Bowden, Mark E, Engelhard, Mark H, Nelson, William C, Hofmockel, Kirsten S, Jansson, Janet K, Anderton, Christopher R, McDermott, Jason, Smith, Ian, and Hofmockel, Michael. KS4A-Omics1.0_FspDS682.  United States: N. p., 2021. 
        Web.  doi:10.25584/KSOmicsFspDS682/1766303.

Copy to clipboard


                    Anderson, Lindsey N, Bhattacharjee, Arunima, Richardson, Jocelyn R, Bramer, Lisa M, Qafoku, Odeta, Zhu, Zihua, Bowden, Mark E, Engelhard, Mark H, Nelson, William C, Hofmockel, Kirsten S, Jansson, Janet K, Anderton, Christopher R, McDermott, Jason, Smith, Ian, & Hofmockel, Michael. KS4A-Omics1.0_FspDS682.  United States.  doi:https://doi.org/10.25584/KSOmicsFspDS682/1766303

Copy to clipboard


                    Anderson, Lindsey N, Bhattacharjee, Arunima, Richardson, Jocelyn R, Bramer, Lisa M, Qafoku, Odeta, Zhu, Zihua, Bowden, Mark E, Engelhard, Mark H, Nelson, William C, Hofmockel, Kirsten S, Jansson, Janet K, Anderton, Christopher R, McDermott, Jason, Smith, Ian, and Hofmockel, Michael. 2021.  
"KS4A-Omics1.0_FspDS682".  United States.  doi:https://doi.org/10.25584/KSOmicsFspDS682/1766303.  https://www.osti.gov/servlets/purl/1766303. Pub date:Tue Apr 20 00:00:00 EDT 2021

Copy to clipboard


                    
@article{osti_1766303,

  title        = {KS4A-Omics1.0_FspDS682},

  author       = {Anderson, Lindsey N and Bhattacharjee, Arunima and Richardson, Jocelyn R and Bramer, Lisa M and Qafoku, Odeta and Zhu, Zihua and Bowden, Mark E and Engelhard, Mark H and Nelson, William C and Hofmockel, Kirsten S and Jansson, Janet K and Anderton, Christopher R and McDermott, Jason and Smith, Ian and Hofmockel, Michael},

  abstractNote = {Soil fungi facilitate the translocation of inorganic nutrients from soil minerals to other microorganisms and plants. This ability is particularly advantageous in impoverished soils, because fungal mycelial networks can bridge otherwise spatially disconnected and inaccessible nutrient hotspots. However, the molecular mechanisms underlying fungal mineral weathering and transport through soil remains poorly understood. Here, we addressed this knowledge gap by directly visualizing nutrient acquisition and transport through fungal hyphae in a mineral doped soil micromodel using a multimodal imaging approach. Here, we observed how a representative of common saprotrophic soil fungi, Fusarium sp. DS 682, exhibited a mechanosensory response (thigmotropism) around obstacles and through pore spaces (~12 μm) in the presence of minerals.This study establishes the significance of fungal biology and nutrient translocation mechanisms in maintaining fungal growth under water and nutrient limitations in a soil-like microenvironment, using a high-throughput multi-omic analysis approach. Data package KS4A-Omics.1.0_FspDS682 (Publication: Fungal Mineral Weathering Mechanisms Revealed Through Direct Molecular Visualization) contents reported here are the first version (1.0) and contain pre- and post-processed data using high throughput data capture technologies for multi-omic analysis and integration, this data package contains raw and post-processed experimental data for X-Ray Absorption Near Edge Structure Spectroscopy (XANES/XRF), Optical Microscopy, Proteomics, Scanning Electron Microscope (SEM), Time-of-Flight Secondary Ion Mass Spectroscopy (ToF-SIMS), X-Ray Diffraction Spectroscopy (XRD) files, and X- Ray Photoelectron Spectroscopy (XPS) using EMSL capabilities. This data package DOI contains a comprehensive collection of high-throughput multi-omics data and process metadata catalog. Support files include additional data download contents “Read Me” with dataset descriptor information and data source method application ontologies (see data dictionary section). Reported data download content is structured for compliance with reported guidelines provided by community standard initiatives and publisher stakeholder policies supporting FAIR data principles.},

  doi          = {10.25584/KSOmicsFspDS682/1766303},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {2021},

  month        = {4}

}

Copy to clipboard

Dataset:

View Dataset

DOI: https://doi.org/10.25584/KSOmicsFspDS682/1766303

Save / Share:

Export Metadata

Save to My Library

Works referenced in this record:

KS4A-IsoG.1.0_FspDS682
dataset, January 2020

Anderson, Lindsey
Pacific Northwest National Laboratory 2; PNNL
https://doi.org/10.25584/KS4AIsoGFspDS682/1635527

Similar records in DOE Data Explorer and OSTI.GOV collections:

Materials Data on LiMg9B20 by Materials Project

Dataset The Materials Project

LiMg9B20 is hexagonal omega structure-derived structured and crystallizes in the triclinic P-1 space group. The structure is three-dimensional. Li is bonded to twelve B atoms to form LiB12 cuboctahedra that share edges with twelve MgB12 cuboctahedra and faces with eight MgB12 cuboctahedra. There are a spread of Li–B bond distances ranging from 2.48–2.50 Å. There are five inequivalent Mg sites. In the first Mg site, Mg is bonded to twelve B atoms to form MgB12 cuboctahedra that share edges with twelve MgB12 cuboctahedra, faces with two equivalent LiB12 cuboctahedra, and faces with six MgB12 cuboctahedra. There are a spread ofmore »« less
Materials Data on Y(CoB)2 by Materials Project

Dataset The Materials Project

YCo2B2 crystallizes in the tetragonal I4/mmm space group. The structure is three-dimensional. Y3+ is bonded in a body-centered cubic geometry to eight equivalent B3- atoms. All Y–B bond lengths are 2.89 Å. Co+1.50+ is bonded to four equivalent B3- atoms to form a mixture of distorted edge and corner-sharing CoB4 tetrahedra. All Co–B bond lengths are 2.00 Å. B3- is bonded in a 4-coordinate geometry to four equivalent Y3+ and four equivalent Co+1.50+ atoms.
Materials Data on Sr2H5Rh by Materials Project

Dataset The Materials Project

Sr2RhH5 crystallizes in the tetragonal I4mm space group. The structure is three-dimensional. Sr is bonded in a distorted q6 geometry to ten H atoms. There are a spread of Sr–H bond distances ranging from 2.68–2.75 Å. Rh is bonded in a square pyramidal geometry to five H atoms. There is four shorter (1.69 Å) and one longer (1.80 Å) Rh–H bond length. There are two inequivalent H sites. In the first H site, H is bonded to four equivalent Sr and one Rh atom to form a mixture of corner, edge, and face-sharing HSr4Rh square pyramids. In the second Hmore »« less
Materials Data on UTeO5 by Materials Project

Dataset The Materials Project

UTeO5 crystallizes in the orthorhombic Pbcm space group. The structure is two-dimensional and consists of one UTeO5 sheet oriented in the (1, 0, 0) direction. U6+ is bonded to seven O2- atoms to form distorted edge-sharing UO7 pentagonal bipyramids. There are a spread of U–O bond distances ranging from 1.81–2.44 Å. Te4+ is bonded in a distorted see-saw-like geometry to four O2- atoms. There are two shorter (1.93 Å) and two longer (2.07 Å) Te–O bond lengths. There are four inequivalent O2- sites. In the first O2- site, O2- is bonded in a single-bond geometry to one U6+ atom. Inmore »« less
Materials Data on MnIn2O4 by Materials Project

Dataset The Materials Project

MnIn2O4 is Spinel structured and crystallizes in the cubic Fd-3m space group. The structure is three-dimensional. Mn2+ is bonded to four equivalent O2- atoms to form MnO4 tetrahedra that share corners with twelve equivalent InO6 octahedra. The corner-sharing octahedral tilt angles are 58°. All Mn–O bond lengths are 2.13 Å. In3+ is bonded to six equivalent O2- atoms to form InO6 octahedra that share corners with six equivalent MnO4 tetrahedra and edges with six equivalent InO6 octahedra. All In–O bond lengths are 2.22 Å. O2- is bonded to one Mn2+ and three equivalent In3+ atoms to form a mixture ofmore »« less

Similar Records

Title: KS4A-Omics1.0_FspDS682 (in EN)

Abstract

Citation Formats

KS4A-IsoG.1.0_FspDS682 dataset, January 2020

KS4A-IsoG.1.0_FspDS682
dataset, January 2020