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Title: Coherent X-ray Imaging Data Bank (CXIDB)

The Coherent X-ray Imaging Data Bank (CXIDB) is a new database which offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. The main goal of the Coherent X-ray Imaging Data Bank is to create an open repository for CXI experimental data. CXIDB is dedicated to further the goal of making data from Coherent X-ray Imaging (CXI) experiments available to all, as well as archiving it. The website also serves as the reference for the CXI file format, in which most of the experimental data on the database is stored in.
Product Type:
Project
Project Lead:
 [1]
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Research Org(s):
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); National Energy Research Scientific Computing Center (NERSC), Berkeley, CA (United States); Scientific Discovery through Advanced Computing (SciDAC), Oak Ridge, TN (United States)
Sponsoring Org:
USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
Geolocation:
Subject:
43 PARTICLE ACCELERATORS; 47 OTHER INSTRUMENTATION; Coherent X-ray Imaging; CXI; Single Particle X-ray Diffraction Imaging; X-ray Free-electron Lasers; CXIDB
OSTI Identifier:
1374167
No associated Collections found.
  1. These are the files used to reconstruct the images in the paper "Single Mimivirus particles intercepted and imaged with an X-ray laser". Besides the diffracted intensities, the Hawk configuration files used for the reconstructions are also provided. The files from CXIDB ID 1 are the pattern and configuration files for the pattern showed in Figure 2a in the paper.
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    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Uppsala University; CFEL DESY; University of Hamburg; CNRS Aix-Marseille University; SLAC National Accelerator Lab., Menlo Park, CA (United States); Swedish University of Agricultural Sciences; Arizona State Univ., Tempe, AZ (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Max-Planck-Institut fur medizinische Forschung; Max-Planck-Institut fur Kernphysik; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; PNSensor GmbH; Universitat Siegen; Forschungszentrum Julich; TU Berlin
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  2. These are the files used to reconstruct the images in the paper "Single Mimivirus particles intercepted and imaged with an X-ray laser". Besides the diffracted intensities, the Hawk configuration files used for the reconstructions are also provided. The files from CXIDB ID 2 are the pattern and configuration files for the pattern showed in Figure 2b in the paper.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Uppsala University
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  3. The diffraction pattern of this entry corresponds to the one shown in **figure 2a** of the corresponding citation.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Univ. of California, Davis, CA (United States); DESY; Uppsala University; Spiller X-ray Optics; TU Berlin; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  4. This is the first of five exposures of the same sample at different tilts. This one is at +0 degrees tilt. Check CXI IDs 4 to 8 for the complete set.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Stony Brook University; Northwestern University; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  5. This is the second of five exposures of the same sample at different tilts. This one is at +15 degrees tilt. Check CXI IDs 4 to 8 for the complete set.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Stony Brook University; Northwestern University; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  6. This is the third of five exposures of the same sample at different tilts. This one is at +30 degrees tilt. Check CXI IDs 4 to 8 for the complete set.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Stony Brook University; Northwestern University; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  7. This is the fourth of five exposures of the same sample at different tilts. This one is at -15 degrees tilt. Check CXI IDs 4 to 8 for the complete set.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Stony Brook University; Northwestern University; Argonne National Lab. (ANL), Argonne, IL (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  8. This is the fifth of five exposures of the same sample at different tilts. This one is at -30 degrees tilt. Check CXI IDs 4 to 8 for the complete set.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Stony Brook University; Northwestern University; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  9. These 2000 single-shot diffraction patterns include were either background-scattering only or hits (background-scattering plus diffraction signal from sub-micron ellipsoidal particles at random, undetermined orientations). Candidate hits were identified by eye, and the remainder were presumed as background. 54 usable, background-subtracted hits in this set (procedure in referenced article) were used to reconstruct the 3D diffraction intensities of the average ellipsoidal particle.
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    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Cornell University; DESY; Uppsala University; Lawrence Berkeley National Laboratory (LLNL); Max Planck Institute for Medical Research; University of Hamburg; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  10. View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Max-Planck-Institut fur medizinische Forschung; DESY; Arizona State Univ., Tempe, AZ (United States); Max-Planck-Institut fur Kernphysik; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; Uppsala University; University of Hamburg; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  11. View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Max-Planck-Institut fur medizinische Forschung; DESY; Arizona State Univ., Tempe, AZ (United States); Max-Planck-Institut fur Kernphysik; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; Uppsala University; University of Hamburg; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  12. View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Max-Planck-Institut fur medizinische Forschung; DESY; Arizona State Univ., Tempe, AZ (United States); Max-Planck-Institut fur Kernphysik; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; Uppsala University; University of Hamburg; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  13. View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Max-Planck-Institut fur medizinische Forschung; DESY; Arizona State Univ., Tempe, AZ (United States); Max-Planck-Institut fur Kernphysik; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; Uppsala University; University of Hamburg; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  14. View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Max-Planck-Institut fur medizinische Forschung; DESY; Arizona State Univ., Tempe, AZ (United States); Max-Planck-Institut fur Kernphysik; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; Uppsala University; University of Hamburg; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  15. The file contains 125 images corresponding to different tilts of the sample around the y axis at 1 degree intervals. Each image is the result of 4 exposures merged together. For more details see the citation.
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Arizona State Univ., Tempe, AZ (United States); Stony Brook University; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  16. This deposition includes the aerosol diffraction images used for phasing, fractal morphology, and time-of-flight mass spectrometry. Files in this deposition are ordered in subdirectories that reflect the specifics.
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    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); DESY; European XFEL; GmbH; Max- Planck-Institut fur medizinische Forschung; Max-Planck-Institut fur Kernphysik; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; Sincrotrone Trieste; Uppsala University; University of Hamburg; Cornell University; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  17. View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); DESY; Max-Planck-Institut fur medizinische Forschung; Arizona State Univ., Tempe, AZ (United States); State University of New York; Nikhef; European Synchrotron Radiation Facility; University of Gothenburg; University of Lubeck; Uppsala University; University of Hamburg; Cornell University; SLAC National Accelerator Lab., Menlo Park, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  18. View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); Cornell University
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  19. This data was collected as part of the same experiment as the data deposited in [ID16](id-16.html). Experiment details are given in [Loh, N.D. et al.](http://dx.doi.org/10.1038/nature11222)
    View Dataset
    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); DESY; European XFEL; GmbH; Max- Planck-Institut fur Kernphysik; Max-Planck-Institut fur medizinische Forschung; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; University of Hamburg; Sincrotrone Trieste; Physikalisch-Technische Bundesanstalt; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
  20. This deposition includes the diffraction images generated by the paired polystyrene spheres in random orientations. These images were used to determine and phase the single particle diffraction volume from their autocorrelation functions.
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    DOE Contract Number:
    AC02-05CH11231
    Publication Date:
    Research Org:
    Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); DESY; European XFEL; GmbH; Arizona State Univ., Tempe, AZ (United States); Max-Planck-Institut fur Kernphysik; Max-Planck-Institut fur medizinische Forschung; PNSensor GmbH; Max-Planck-Institut Halbleiterlabor; Max-Planck-Institut fur extraterrestrische Physik; University of Hamburg; Kansas State University; Physikalisch-Technische Bundesanstalt; SLAC National Accelerator Lab., Menlo Park, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
    Sponsoring Org:
    USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)