IMG/M: A Data Management and Analysis System for Metagenomes

Markowitz, Victor M; Ivanova, Natalie N; Szeto, Ernest; Palaniappan, Krishna; Chu, Ken; Dalevi, Daniel; Chen, I-Min A; Grechkin, Yuri; Dubchak, Inna; Anderson, Iain; Lykidis, Athanasios; Mavromatis, Konstantinos; Hugenholtz, Philip; Kyrpides, Nikos C

doi:10.1093/nar/gkm869

Title: IMG/M: A Data Management and Analysis System for Metagenomes

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Abstract

The research described in this product was performed in part in the Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by the Department of Energy's Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory. IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy’s (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMG’s comparative data analysis tools extended to handle metagenome data, together with metagenome-specific analysis tools. IMG/M is available at http://img.jgi.doe.gov/m

Authors:: Markowitz, Victor M; Ivanova, Natalie N; Szeto, Ernest; Palaniappan, Krishna; Chu, Ken; Dalevi, Daniel; Chen, I-Min A; Grechkin, Yuri; Dubchak, Inna; Anderson, Iain; Lykidis, Athanasios; Mavromatis, Konstantinos; Hugenholtz, Philip; Kyrpides, Nikos C

Publication Date:: Tue Jan 01 00:00:00 EST 2008

Research Org.:: Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab. (EMSL)

Sponsoring Org.:: USDOE

OSTI Identifier:: 926927

DOE Contract Number:: AC05-76RL01830

Resource Type:: Journal Article

Journal Name:: Nucleic Acids Research, 36(1):D534-D538

Additional Journal Information:: Journal Name: Nucleic Acids Research, 36(1):D534-D538

Country of Publication:: United States

Language:: English

Subject:: Environmental Molecular Sciences Laboratory

Citation Formats


                    Markowitz, Victor M, Ivanova, Natalie N, Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A, Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip, and Kyrpides, Nikos C. IMG/M: A Data Management and Analysis System for Metagenomes.  United States: N. p., 2008. 
        Web.  doi:10.1093/nar/gkm869.

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                    Markowitz, Victor M, Ivanova, Natalie N, Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A, Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip, & Kyrpides, Nikos C. IMG/M: A Data Management and Analysis System for Metagenomes.  United States.  https://doi.org/10.1093/nar/gkm869

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                    Markowitz, Victor M, Ivanova, Natalie N, Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A, Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip, and Kyrpides, Nikos C. 2008.  
        "IMG/M: A Data Management and Analysis System for Metagenomes".  United States.  https://doi.org/10.1093/nar/gkm869.

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@article{osti_926927,

  title        = {IMG/M: A Data Management and Analysis System for Metagenomes},

  author       = {Markowitz, Victor M and Ivanova, Natalie N and Szeto, Ernest and Palaniappan, Krishna and Chu, Ken and Dalevi, Daniel and Chen, I-Min A and Grechkin, Yuri and Dubchak, Inna and Anderson, Iain and Lykidis, Athanasios and Mavromatis, Konstantinos and Hugenholtz, Philip and Kyrpides, Nikos C},

  abstractNote = {The research described in this product was performed in part in the Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by the Department of Energy's Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory. IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy’s (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMG’s comparative data analysis tools extended to handle metagenome data, together with metagenome-specific analysis tools. IMG/M is available at http://img.jgi.doe.gov/m},

  doi          = {10.1093/nar/gkm869},

  url          = {https://www.osti.gov/biblio/926927},
  journal      = {Nucleic Acids Research, 36(1):D534-D538},
number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Jan 01 00:00:00 EST 2008},

  month        = {Tue Jan 01 00:00:00 EST 2008}

}

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