An Experimental Metagenome Data Management and AnalysisSystem
Conference
·
OSTI ID:889805
The application of shotgun sequencing to environmental samples has revealed a new universe of microbial community genomes (metagenomes) involving previously uncultured organisms. Metagenome analysis, which is expected to provide a comprehensive picture of the gene functions and metabolic capacity of microbial community, needs to be conducted in the context of a comprehensive data management and analysis system. We present in this paper IMG/M, an experimental metagenome data management and analysis system that is based on the Integrated Microbial Genomes (IMG) system. IMG/M provides tools and viewers for analyzing both metagenomes and isolate genomes individually or in a comparative context.
- Research Organization:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Organization:
- USDOE Director. Office of Science. Office of Biological andEnvironmental Research. Life Sciences Division
- DOE Contract Number:
- DE-AC02-05CH11231
- OSTI ID:
- 889805
- Report Number(s):
- LBNL-60051; R&D Project: KL64EQ; BnR: YN0100000; TRN: US200619%%855
- Resource Relation:
- Conference: ISMB 2006, Fortaleza, Brazil, Aug 6-10,2006
- Country of Publication:
- United States
- Language:
- English
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