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Discovery and Characterization of a Chemical Probe Targeting the Zinc-Finger Ubiquitin-Binding Domain of HDAC6

Journal Article · · Journal of Medicinal Chemistry
 [1];  [2];  [3];  [3];  [4];  [3];  [3];  [3];  [4];  [4];  [4];  [4];  [4];  [3];  [1];  [3];  [1];  [4];  [5]
  1. Structural Genomics Consortium, University of Toronto, Toronto, Ontario M5G 1L7, Canada; Department of Pharmacology & Toxicology, University of Toronto, Toronto, Ontario M5S 1A8, Canada
  2. Davenport Research Laboratories, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada; Valence Discovery Inc., 6666 Rue St-Urbain, Suite 200, Montreal, Quebec H2S 3H1, Canada
  3. Structural Genomics Consortium, University of Toronto, Toronto, Ontario M5G 1L7, Canada
  4. Davenport Research Laboratories, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
  5. Structural Genomics Consortium, University of Toronto, Toronto, Ontario M5G 1L7, Canada; Princess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 1L7, Canada
Not provided.
Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
USDOE
DOE Contract Number:
AC02-06CH11357
OSTI ID:
2423383
Journal Information:
Journal of Medicinal Chemistry, Journal Name: Journal of Medicinal Chemistry Journal Issue: 15 Vol. 66; ISSN 0022-2623
Publisher:
American Chemical Society (ACS)
Country of Publication:
United States
Language:
English

References (35)

HDAC6 at Crossroads of Infection and Innate Immunity journal August 2018
Features and development of Coot journal March 2010
HDAC6 as a target for neurodegenerative diseases: what makes it different from the other HDACs? journal January 2013
Small-molecule inhibition of proteasome and aggresome function induces synergistic antitumor activity in multiple myeloma journal June 2005
Interplay Between HDAC6 and Its Interacting Partners: Essential Roles in the Aggresome-Autophagy Pathway and Neurodegenerative Diseases journal September 2014
Protein Aggregates Are Recruited to Aggresome by Histone Deacetylase 6 via Unanchored Ubiquitin C Termini journal January 2012
Histone deacetylase 6 structure and molecular basis of catalysis and inhibition journal July 2016
HDAC6–p97/VCP controlled polyubiquitin chain turnover journal June 2006
HDAC6 is a microtubule-associated deacetylase journal May 2002
A potent nuclear export mechanism imposes USP16 cytoplasmic localization during interphase journal February 2020
Old but Gold: Tracking the New Guise of Histone Deacetylase 6 (HDAC6) Enzyme as a Biomarker and Therapeutic Target in Rare Diseases journal August 2019
Influenza A virus uses the aggresome processing machinery for host cell entry journal October 2014
Results of an abbreviated Phase Ib study of the HDAC6 inhibitor ricolinostat and paclitaxel in recurrent ovarian, fallopian tube, or primary peritoneal cancer journal August 2019
How good are my data and what is the resolution? journal June 2013
Non-hydroxamate Histone Deacetylase Inhibitors journal November 2005
Ricolinostat, the First Selective Histone Deacetylase 6 Inhibitor, in Combination with Bortezomib and Dexamethasone for Relapsed or Refractory Multiple Myeloma journal January 2017
Structural insights into HDAC6 tubulin deacetylation and its selective inhibition journal July 2016
Disrupting the HDAC6-ubiquitin interaction impairs infection by influenza and Zika virus and cellular stress pathways journal April 2022
Identification of Components of the Murine Histone Deacetylase 6 Complex: Link between Acetylation and Ubiquitination Signaling Pathways journal December 2001
Quantitative, Real-Time Measurements of Intracellular Target Engagement Using Energy Transfer book December 2018
Small Molecule Antagonists of the Interaction between the Histone Deacetylase 6 Zinc-Finger Domain and Ubiquitin journal October 2017
REFMAC 5 for the refinement of macromolecular crystal structures journal March 2011
Interferon-stimulated Gene 15 (ISG15) and ISG15-linked Proteins Can Associate with Members of the Selective Autophagic Process, Histone Deacetylase 6 (HDAC6) and SQSTM1/p62 journal January 2015
Ricolinostat plus lenalidomide, and dexamethasone in relapsed or refractory multiple myeloma: a multicentre phase 1b trial journal November 2016
Proteome-wide identification of ubiquitin interactions using UbIA-MS journal February 2018
Identification and Structure–Activity Relationship of HDAC6 Zinc-Finger Ubiquitin Binding Domain Inhibitors journal May 2018
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer journal December 2022
ISG15: a ubiquitin-like enigma journal January 2005
The Deacetylase HDAC6 Regulates Aggresome Formation and Cell Viability in Response to Misfolded Protein Stress journal December 2003
Histone deacetylases (HDACs): characterization of the classical HDAC family journal March 2003
Attenuation of NLRP3 Inflammasome Activation by Indirubin-Derived PROTAC Targeting HDAC6 journal December 2021
MolProbity: More and better reference data for improved all-atom structure validation: PROTEIN SCIENCE.ORG journal November 2017
HDAC6 mediates an aggresome-like mechanism for NLRP3 and pyrin inflammasome activation journal September 2020
Histone deacetylase 6 binds polyubiquitin through its zinc finger (PAZ domain) and copurifies with deubiquitinating enzymes journal September 2002
Histone deacetylase 6 in cancer journal September 2018

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