|
On the Dielectric “Constant” of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi
|
journal
|
March 2013 |
|
Bringing Again Noble Metal Nanoparticles to the Forefront of Cancer Therapy
|
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|
October 2018 |
|
Complexes of HIV-1 integrase with HAT proteins: Multiscale models, dynamics, and hypotheses on allosteric sites of inhibition
|
journal
|
September 2009 |
|
A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model
|
journal
|
October 1993 |
|
Optimization of Analytical Potentials for Coarse-Grained Biopolymer Models
|
journal
|
May 2016 |
|
Protonation-dependent adsorption of polyarginine onto silver nanoparticles
|
journal
|
February 2020 |
|
Engineering the Interface between Inorganic Nanoparticles and Biological Systems through Ligand Design
|
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|
April 2021 |
|
High affinity protein surface binding through co-engineering of nanoparticles and proteins
|
journal
|
January 2022 |
|
Functionalized Gold Nanoparticles: Synthesis, Properties and Applications—A Review
|
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|
March 2015 |
|
A Minimalist Model of Protein Diffusion and Interactions: The Green Fluorescent Protein within the Cytoplasm
|
journal
|
October 2013 |
|
Role of Ionic Strength in the Formation of Stable Supramolecular Nanoparticle–Protein Conjugates for Biosensing
|
journal
|
February 2022 |
|
Multilevel Summation Method for Electrostatic Force Evaluation
|
journal
|
January 2015 |
|
Molecular Dynamics Simulations of a Catalytic Multivalent Peptide–Nanoparticle Complex
|
journal
|
March 2021 |
|
Dynamics and self-assembly of bio-functionalized gold nanoparticles in solution: Reactive molecular dynamics simulations
|
journal
|
March 2018 |
|
Electrostatic interactions between spheroidal dielectric particles
|
journal
|
January 2020 |
|
Competitive Binding of Proteins to Gold Nanoparticles Disclosed by Molecular Dynamics Simulations
|
journal
|
September 2015 |
|
Polymorphic transitions in single crystals: A new molecular dynamics method
|
journal
|
December 1981 |
|
Atomistic Simulations of Functional Au 144 (SR) 60 Gold Nanoparticles in Aqueous Environment
|
journal
|
April 2012 |
|
Arbitrary-Shape Dielectric Particles Interacting in the Linearized Poisson–Boltzmann Framework: An Analytical Treatment
|
journal
|
December 2022 |
|
R.E.D. Server: a web service for deriving RESP and ESP charges and building force field libraries for new molecules and molecular fragments
|
journal
|
May 2011 |
|
Applications of Noble Metal-Based Nanoparticles in Medicine
|
journal
|
December 2018 |
|
Three-body effects in triplets of capped gold nanocrystals
|
journal
|
August 2016 |
|
Coarse-grained model of adsorption of blood plasma proteins onto nanoparticles
|
journal
|
December 2015 |
|
Can small hydrophobic gold nanoparticles inhibit β 2 -microglobulin fibrillation?
|
journal
|
January 2014 |
|
Low-Resolution Models for the Interaction Dynamics of Coated Gold Nanoparticles with β2-microglobulin
|
journal
|
August 2019 |
|
Canonical sampling through velocity rescaling
|
journal
|
January 2007 |
|
Diverse Applications of Nanomedicine
|
journal
|
February 2017 |
|
GROMACS: Fast, flexible, and free
|
journal
|
January 2005 |
|
Poisson–Boltzmann theory of charged colloids: limits of the cell model for salty suspensions
|
journal
|
August 2010 |
|
NanoModeler CG: A Tool for Modeling and Engineering Functional Nanoparticles at a Coarse-Grained Resolution
|
journal
|
February 2023 |
|
Predicting the Physicochemical Properties and Biological Activities of Monolayer-Protected Gold Nanoparticles Using Simulation-Derived Descriptors
|
journal
|
March 2022 |
|
Structure of Mixed-Monolayer-Protected Nanoparticles in Aqueous Salt Solution from Atomistic Molecular Dynamics Simulations
|
journal
|
September 2013 |
|
Surface Effects on Aggregation Kinetics of Amyloidogenic Peptides
|
journal
|
August 2014 |
|
Diffusion within the Cytoplasm: A Mesoscale Model of Interacting Macromolecules
|
journal
|
December 2014 |
|
A smooth particle mesh Ewald method
|
journal
|
November 1995 |
|
Deep learning potential of mean force between polymer grafted nanoparticles
|
journal
|
January 2022 |
|
Aggregation modeling of the influence of pH on the aggregation of variably charged nanoparticles
|
journal
|
August 2021 |
|
Evolutionary Algorithm in the Optimization of a Coarse-Grained Force Field
|
journal
|
October 2013 |
|
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
|
journal
|
September 2015 |
|
Gold Nanoparticles: Understanding and Designing the Gold-Bio Interface: Insights from Simulations (Small 18/2016)
|
journal
|
May 2016 |
|
Multiscale modeling of proteins interaction with functionalized nanoparticles
|
journal
|
June 2019 |
|
VMD: Visual molecular dynamics
|
journal
|
February 1996 |
|
The gold–sulfur interface at the nanoscale
|
journal
|
May 2012 |
|
GolP: An atomistic force-field to describe the interaction of proteins with Au(111) surfaces in water
|
journal
|
July 2009 |
|
Continuum theories of structured dielectrics
|
journal
|
July 2022 |
|
A Unified AMBER-Compatible Molecular Mechanics Force Field for Thiolate-Protected Gold Nanoclusters
|
journal
|
February 2016 |
|
Array-based sensing with nanoparticles: ‘Chemical noses’ for sensing biomolecules and cell surfaces
|
journal
|
December 2010 |
|
Charge Renormalization, Thermodynamics, and Structure of Deionized Colloidal Suspensions
|
journal
|
June 2010 |
|
Contrasting effects of nanoparticle–protein attraction on amyloid aggregation
|
journal
|
January 2015 |
|
Electrostatics of nanosystems: Application to microtubules and the ribosome
|
journal
|
August 2001 |
|
Fluorescent Gold Nanoclusters: Recent Advances in Sensing and Imaging
|
journal
|
October 2014 |
|
Small molecule-mediated inhibition of β-2-microglobulin-based amyloid fibril formation
|
journal
|
May 2017 |
|
A model of a local dielectric constant in proteins
|
journal
|
February 1998 |