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Overview of physiological, biochemical, and regulatory aspects of nitrogen fixation in Azotobacter vinelandii

Journal Article · · Critical Reviews in Biochemistry and Molecular Biology
 [1];  [2];  [3];  [4];  [5];  [6];  [4];  [3];  [7];  [2]
  1. Department of Biochemistry, Virginia Tech, Blacksburg, VA, USA; OSTI
  2. Department of Chemistry, Wake Forest University, Winston-Salem, NC, USA
  3. Department of Molecular Microbiology, John Innes Centre, Norwich, UK
  4. Institute of Biological Chemistry, Washington State University, Pullman, WA, USA
  5. Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA/CSIC), Pozuelo de Alarcón, Spain
  6. Department of Biochemistry, University of Freiburg, Freiburg, Germany
  7. Department of Biochemistry, Virginia Tech, Blacksburg, VA, USA

Not provided.

Research Organization:
Washington State Univ., Pullman, WA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
SC0018143
OSTI ID:
2422482
Journal Information:
Critical Reviews in Biochemistry and Molecular Biology, Journal Name: Critical Reviews in Biochemistry and Molecular Biology Journal Issue: 5-6 Vol. 57; ISSN 1040-9238
Publisher:
Taylor & Francis
Country of Publication:
United States
Language:
English

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  • Erisman, Jan Willem; Galloway, James N.; Seitzinger, Sybil
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 368, Issue 1621 https://doi.org/10.1098/rstb.2013.0116
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Direct Interaction of the NifL Regulatory Protein with the GlnK Signal Transducer Enables the Azotobacter vinelandiiNifL-NifA Regulatory System to Respond to Conditions Replete for Nitrogen journal May 2002
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Reversible Photoinduced Reductive Elimination of H 2 from the Nitrogenase Dihydride State, the E 4 (4H) Janus Intermediate journal January 2016
The Glutamine Synthetase from Azotobacter vinelandii: Purification, Characterization, Regulation and Localization journal August 1978
A Conformational Switch Triggers Nitrogenase Protection from Oxygen Damage by Shethna Protein II (FeSII) journal December 2015
Alkyne substrate interaction within the nitrogenase MoFe protein journal November 2007
The cydR gene product, required for regulation of cytochrome bd expression in the obligate aerobe Azotobacter vinelandii, is an Fnr-like protein journal July 1997
Catalytic and Biophysical Properties of a Nitrogenase Apo-MoFe Protein Produced by a n ifB -Deletion Mutant of Azotobacter v inelandii journal September 1998
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DNA sequence and genetic analysis of the Rhodobacter capsulatus nifENX gene region: Homology between NifX and NifB suggests involvement of NifX in processing of the iron-molybdenum cofactor journal April 1989
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Mo-, V-, and Fe-Nitrogenases Use a Universal Eight-Electron Reductive-Elimination Mechanism To Achieve N 2 Reduction journal June 2019
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The redox‐ and fixed nitrogen‐responsive regulatory protein NIFL from Azotobacter vinelandii comprises discrete flavin and nucleotide‐binding domains journal April 1998
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The FeSII protein of Azotobacter vinelandii is not essential for aerobic nitrogen fixation, but confers significant protection to oxygen‐mediated inactivation of nitrogenase in vitro and in vivo journal October 1994
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Functional expression of the nitrogenase Fe protein in transgenic rice journal October 2022
Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501 journal May 2008
Regulation of the transcriptional activators AnfA and VnfA by metals and ammonium in Azotobacter vinelandii journal July 1998
Physical and genetic map of the major nif gene cluster from Azotobacter vinelandii. journal February 1989
Nucleotide sequence and mutational analysis of the structural genes (anfHDGK) for the second alternative nitrogenase from Azotobacter vinelandii. journal February 1989
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Structural Characterization of Two CO Molecules Bound to the Nitrogenase Active Site journal January 2021
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An unexpected P-cluster like intermediate en route to the nitrogenase FeMo-co journal January 2021
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Cloning and Mutational Analysis of the γ Gene fromAzotobacter vinelandii Defines a New Family of Proteins Capable of Metallocluster Binding and Protein Stabilization journal April 2002
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A Vanadium and Iron Cluster Accumulates on VnfX during Iron-Vanadium-cofactor Synthesis for the Vanadium Nitrogenase inAzotobacter vinelandii journal June 1999
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Evidence for Interstitial Carbon in Nitrogenase FeMo Cofactor journal November 2011
Quaternary structure changes in a second Per-Arnt-Sim domain mediate intramolecular redox signal relay in the NifL regulatory protein journal January 2010
The FeMoco-deficient MoFe Protein Produced by a nifH Deletion Strain of Azotobacter vinelandii Shows Unusual P-cluster Features journal April 2002
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Purification and Characterization of NafY (Apodinitrogenase γ Subunit) from Azotobacter vinelandii journal May 2004
Environment and coordination of FeMo–co in the nitrogenase metallochaperone NafY journal January 2021
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Coordinated regulation of nitrogen fixation and molybdate transport by molybdenum: Molybdenum regulation of nitrogen fixation journal November 2018
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Two NADH:ubiquinone oxidoreductases of Azotobacter vinelandii and their role in the respiratory protection journal February 1998
Energy Conservation via Electron-Transferring Flavoprotein in Anaerobic Bacteria journal November 2007
Crystallographic structure of the nitrogenase iron protein from Azotobacter vinelandii journal September 1992
In vitro synthesis of the iron-molybdenum cofactor of nitrogenase. Purification and characterization of NifB cofactor, the product of NIFB protein. journal January 1994
Reductive Elimination of H 2 Activates Nitrogenase to Reduce the N≡N Triple Bond: Characterization of the E 4 (4H) Janus Intermediate in Wild-Type Enzyme journal August 2016
The gene encoding dinitrogenase reductase 2 is required for expression of the second alternative nitrogenase from Azotobacter vinelandii. journal July 1991
Genetic regulation of biological nitrogen fixation journal August 2004
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MgATP-Bound and Nucleotide-Free Structures of a Nitrogenase Protein Complex between the Leu 127Δ-Fe-Protein and the MoFe-Protein , journal January 2001
Complementation analysis of Klebsiella pneumoniae mutants defective in nitrogen fixation journal January 1977
Electrochemical and structural characterization of Azotobacter vinelandii flavodoxin II: Segal et al. journal August 2017
X-Ray Structure of Rhodobacter Capsulatus Cytochrome bc 1 : Comparison with its Mitochondrial and Chloroplast Counterparts journal January 2004
Nitrogen fixation genetics and regulation in a Pseudomonas stutzeri strain associated with rice journal August 2003
Gene Fitness of Azotobacter vinelandii under Diazotrophic Growth journal November 2021
Controlled Expression of nif and isc Iron-Sulfur Protein Maturation Components Reveals Target Specificity and Limited Functional Replacement between the Two Systems journal January 2007
P II signal transduction proteins: nitrogen regulation and beyond journal March 2013
Mutagenesis of a gene encoding a cytochromeo-like terminal oxidase ofAzotobacter vinelandii: A cytochromeomutant is aero-tolerant during nitrogen fixation journal June 1994
Purification and characterization of the nifN and nifE gene products from Azotobacter vinelandii mutant UW45. journal August 1989
The mechanism of Klebsiella pneumoniae nitrogenase action. The determination of rate constants required for the simulation of the kinetics of N2 reduction and H2 evolution journal December 1984
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NifU and NifS are required for the maturation of nitrogenase and cannot replace the function of isc-gene products in Azotobacter vinelandii journal February 2005
Transduction of the Nitrogen-Fixation Genes in Klebsiella pneumoniae journal June 1971
Acetylene reduction by nitrogen-fixing preparations from Clostridium pasteurianum journal October 1966
Kinetic studies on electron transfer and interaction between nitrogenase components from Azotobacter vinelandii journal October 1978
Production and isolation of vanadium nitrogenase from Azotobacter vinelandii by molybdenum depletion journal December 2016
Electron allocation to alternative substrates of Azotobacter nitrogenase is controlled by the electron flux through dinitrogenase journal June 1980
The NifZ accessory protein has an equivalent function in maturation of both nitrogenase MoFe protein P-clusters journal April 2019
Fine-structure mapping and complementation analysis of nif (nitrogen fixation) genes in Klebsiella pneumoniae journal October 1978
Role for the nitrogenase MoFe protein α-subunit in FeMo-cofactor binding and catalysis journal January 1990
State of the art in eukaryotic nitrogenase engineering journal December 2017
Metal trafficking for nitrogen fixation: NifQ donates molybdenum to NifEN/NifH for the biosynthesis of the nitrogenase FeMo-cofactor journal August 2008
Isolation of a new vanadium-containing nitrogenase from Azotobacter vinelandii journal November 1986
Purification of the Azotobacter vinelandii nifV-encoded homocitrate synthase. journal September 1997
CO as a substrate and inhibitor of H+ reduction for the Mo-, V-, and Fe-nitrogenase isozymes journal December 2020
Tracing the ‘ninth sulfur’ of the nitrogenase cofactor via a semi-synthetic approach journal April 2018
Biotechnological solutions to the nitrogen problem journal April 2014
Molybdate transport and regulation in bacteria journal October 1997
Metallocluster transactions: dynamic protein interactions guide the biosynthesis of Fe–S clusters in bacteria journal October 2018
Sensory properties of the P II signalling protein family journal November 2015
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The nifU, nifS and nifV gene products are required for activity of all three nitrogenases of Azotobacter vinelandii journal February 1992
Chimeric transcriptional activators generated in vivo from VnfA and AnfA of Azotobacter vinelandii: N-terminal domain of AnfA is responsible for dependence on nitrogenase Fe protein journal November 1994
Nucleotide sequences and mutational analysis of the structural genes for nitrogenase 2 of Azotobacter vinelandii. journal June 1990
Structural Insights into the Mechanism of the Radical SAM Carbide Synthase NifB, a Key Nitrogenase Cofactor Maturating Enzyme journal May 2020
NifS-Mediated Assembly of [4Fe−4S] Clusters in the N- and C-Terminal Domains of the NifU Scaffold Protein journal October 2005
Nitrogenase X: Mössbauer and EPR studies on reversibly oxidized MoFe protein from Azotobacter vinelandii OP Nature of the iron centers journal December 1978
Nucleotide sequence and genetic analysis of the Azotobacter chroococcum nifUSVWZM gene cluster, including a new gene (nifP) which encodes a serine acetyltransferase journal September 1991
Identification of a Positive Transcription Regulatory Element within the Coding Region of the nifLA Operon in Azotobacter vinelandii journal July 2005
The role of the GAF and central domains of the transcriptional activator VnfA in Azotobacter vinelandii: The GAF domain controls the activity of VnfA journal August 2011
Nitrogenase: Properties of the catalytically inactive complex between the azotobacter vinelandii MoFe protein and the clostridium pasteurianum Fe protein journal January 1978
Reconstruction and minimal gene requirements for the alternative iron-only nitrogenase in Escherichia coli journal August 2014
VnfY Is Required for Full Activity of the Vanadium-Containing Dinitrogenase in Azotobacter vinelandii journal April 2003
A New Type of Metalloprotein: The Mo Storage Protein from Azotobacter vinelandii Contains a Polynuclear Molybdenum–Oxide Cluster journal January 2005
A Sterile α-Motif Domain in NafY Targets Apo-NifDK for Iron-Molybdenum Cofactor Delivery via a Tethered Domain journal February 2011
The nifH, nifM and nifN genes of Azotobacter vinelandii: Characterisation by Tn5 mutagenesis and isolation from pLAFR1 gene banks journal November 1986
Architecture of Succinate Dehydrogenase and Reactive Oxygen Species Generation journal January 2003
The electronic structure of FeV-cofactor in vanadium-dependent nitrogenase journal January 2021
Structural Basis for Fe–S Cluster Assembly and tRNA Thiolation Mediated by IscS Protein–Protein Interactions journal April 2010
Structural analysis of the reductase component AnfH of iron-only nitrogenase from Azotobacter vinelandii journal February 2022
Characteristics of NIFNE in Azotobacter vinelandii Strains journal March 1995
Nitrogenase and nitrogenase reductase associate and dissociate with each catalytic cycle. journal June 1978
Uptake of molybdenum and vanadium by a nitrogen-fixing soil bacterium using siderophores journal March 2008
Characterization of the γ Protein and Its Involvement in the Metallocluster Assembly and Maturation of Dinitrogenase from Azotobacter vinelandii journal October 1995
A Non-Gummy Chromogenic Strain of Azotobacter vinelandii journal August 1959
Exploring the alternatives of biological nitrogen fixation journal January 2018
Siderophore production in Azotobacter vinelandii in response to Fe‐, Mo‐ and V‐limitation journal August 2017
Dependence of nitrogenase switch-off upon oxygen stress on the nitrogenase activity in Azotobacter vinelandii journal November 1988
Current and future role of Haber–Bosch ammonia in a carbon-free energy landscape journal January 2020
Exploiting genetic diversity and gene synthesis to identify superior nitrogenase NifH protein variants to engineer N2-fixation in plants journal January 2021
Assembly of Iron-Sulfur Clusters: IDENTIFICATION OF AN journal May 1998
NifX and NifEN exchange NifB cofactor and the VK-cluster, a newly isolated intermediate of the iron-molybdenum cofactor biosynthetic pathway journal January 2007
Respiration and energy conservation inAzotobacter vinelandii journal January 1978
Crystallographic structure and functional implications of the nitrogenase molybdenum–iron protein from Azotobacter vinelandii journal December 1992
Nucleotide sequence of a 24,206-base-pair DNA fragment carrying the entire nitrogen fixation gene cluster of Klebsiella pneumoniae journal October 1988
Purification of a second alternative nitrogenase from a nifHDK deletion strain of Azotobacter vinelandii. journal January 1988
Characterization of an M-Cluster-Substituted Nitrogenase VFe Protein journal March 2018
P-cluster maturation on nitrogenase MoFe protein journal June 2007
Nitrogenase Cofactor Maturase NifB Isolated from Transgenic Rice is Active in FeMo-co Synthesis journal August 2022
The vanadium nitrogenase of Azotobacter chroococcum. Purification and properties of the VFe protein journal May 1987
Iron-molybdenum cofactor synthesis in Azotobacter vinelandii Nif- mutants. journal January 1987
Peptidyl-Prolyl cis/trans Isomerase-Independent Functional NifH Mutant of Azotobacter vinelandii journal August 2006
The Emergence of 2-Oxoglutarate as a Master Regulator Metabolite journal September 2015
Effect of amino acid substitutions in a potential metal-binding site of AnfA on expression from the anfH promoter in Azotobacter vinelandii journal October 1994
The structure of vanadium nitrogenase reveals an unusual bridging ligand journal July 2017
Nitrogen Assimilation in Escherichia coli: Putting Molecular Data into a Systems Perspective journal December 2013
Compilation and analysis of  54-dependent promoter sequences journal November 1999
Disrupting hierarchical control of nitrogen fixation enables carbon-dependent regulation of ammonia excretion in soil diazotrophs journal June 2021
Transcriptional Profiling of Nitrogen Fixation in Azotobacter vinelandii journal July 2011
Electron Transfer within Nitrogenase: Evidence for a Deficit-Spending Mechanism journal November 2011
Highly accurate protein structure prediction with AlphaFold journal July 2021
Crystal Structure of IscA, an Iron-sulfur Cluster Assembly Protein from Escherichia coli journal April 2004
A late methanogen origin for molybdenum-dependent nitrogenase: A late methanogen origin for Mo-nitrogenase journal April 2011
The key role of glutamate 172 in the mechanism of type II NADH:quinone oxidoreductase of Staphylococcus aureus journal October 2017
Nucleotide sequence and genetic analysis of the nifB-nifQ region from Azotobacter vinelandii. journal January 1988
A critical role of an oxygen-responsive gene for aerobic nitrogenase activity in Azotobacter vinelandii and its application to Escherichia coli journal March 2022
Role of the MoFe Protein .alpha.-Subunit Histidine-195 Residue in FeMo-cofactor Binding and Nitrogenase Catalysis journal March 1995
The modE gene product mediates molybdenum-dependent expression of genes for the high-affinity molybdate transporter and modG in Azotobacter vinelandii journal August 1996
Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases journal March 2020
Genes required for rapid expression of nitrogenase activity in Azotobacter vinelandii journal April 2005
Homocitrate is a component of the iron-molybdenum cofactor of nitrogenase journal April 1989
AnfO controls fidelity of nitrogenase FeFe protein maturation by preventing misincorporation of FeV‐cofactor journal March 2022
Electron transfer precedes ATP hydrolysis during nitrogenase catalysis journal September 2013
Identification of a new class of nitrogen fixation genes in Rhodobacter capsalatus: a putative membrane complex involved in electron transport to nitrogenase journal December 1993
Cytochrome bd from Azotobacter vinelandii :  Evidence for High-Affinity Oxygen Binding journal October 2007
The Amino-terminal GAF Domain of Azotobacter vinelandii NifA Binds 2-Oxoglutarate to Resist Inhibition by NifL under Nitrogen-limiting Conditions journal August 2003
Role of Azotobacter vinelandii FdxN in FeMo‐co biosynthesis journal December 2013
Site-directed mutagenesis of the nitrogenase MoFe protein of Azotobacter vinelandii journal October 1987
Radical SAM-Dependent Carbon Insertion into the Nitrogenase M-Cluster journal September 2012
Selective inactivation of nitrogenase in Azotobacter vinelandii batch cultures journal October 1976
Mutational analysis of genes of the mod locus involved in molybdenum transport, homeostasis, and processing in Azotobacter vinelandii. journal September 1995
Organization and expression of Rhizobium meliloti nitrogen fixation genes journal May 1983
Nitrogenase reactivity with P-cluster variants journal September 2005
Biosynthesis of the Iron-Molybdenum Cofactor of Nitrogenase journal October 2008
The Role of Bacterial Enhancer Binding Proteins as Specialized Activators of  54-Dependent Transcription journal August 2012
Levels and activities of nitrogenase proteins in Azotobacter vinelandii grown at different dissolved oxygen concentrations journal May 1988
Sequential and differential interaction of assembly factors during nitrogenase MoFe protein maturation journal June 2018
The Spectroscopy of Nitrogenases journal April 2020
Insights into Nucleotide Signal Transduction in Nitrogenase:  Structure of an Iron Protein with MgADP Bound , journal December 2000
Biosynthesis of cofactor‐activatable iron‐only nitrogenase in Saccharomyces cerevisiae journal January 2021
Evidence for an alternative nitrogen fixation system in Azotobacter vinelandii. journal December 1980
Regulation of expression of Na+-translocating NADH:quinone oxidoreductase genes in Vibrio harveyi and Klebsiella pneumoniae journal June 2007
Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes journal April 2016
IscA, an Alternate Scaffold for Fe−S Cluster Biosynthesis journal October 2001
Overlapping and Specialized Functions of the Molybdenum-Dependent Regulators MopA and MopB in Rhodobacter capsulatus journal December 2006
Excretion of ammonium by a nifL mutant of Azotobacter vinelandii fixing nitrogen. journal January 1992
Variable-Temperature, Variable-Field Magnetic Circular Dichroism Spectroscopic Study of the Metal Clusters in the Δ nifB and Δ nifH MoFe Proteins of Nitrogenase from Azotobacter vinelandii journal December 2006
Structure and mechanism of the aberrant ba3-cytochrome c oxidase from Thermus thermophilus journal April 2000
Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis. journal April 1993
Electron donation to the flavoprotein NifL, a redox-sensing transcriptional regulator journal June 1998
In vitro synthesis of the iron molybdenum cofactor of nitrogenase from iron, sulfur, molybdenum, and homocitrate using purified proteins journal October 2007
Bacterial Approaches for Assembling Iron-Sulfur Proteins journal December 2021
The Azotobacter vinelandii NifEN Complex Contains Two Identical [4Fe-4S] Clusters journal July 1998
The Nitrogenase FeMo-Cofactor Precursor Formed by NifB Protein: A Diamagnetic Cluster Containing Eight Iron Atoms journal September 2016
Specificity of NifEN and VnfEN for the Assembly of Nitrogenase Active Site Cofactors in Azotobacter vinelandii journal August 2021
Biosynthesis of Nitrogenase Cofactors journal January 2020
The Human Creation and Use of Reactive Nitrogen: A Global and Regional Perspective journal October 2021
VTVH-MCD Study of the Δ nifB Δ nifZ MoFe Protein from Azotobacter vinelandii journal April 2009
Crystal structure of VnfH, the iron protein component of vanadium nitrogenase journal August 2018
Biosynthesis of iron-molybdenum cofactor in the absence of nitrogenase. journal January 1984
Structure of Precursor-Bound NifEN: A Nitrogenase FeMo Cofactor Maturase/Insertase journal January 2011
Structure of a Cofactor-Deficient Nitrogenase MoFe Protein journal April 2002
X‐Ray Crystallographic Analysis of NifB with a Full Complement of Clusters: Structural Insights into the Radical SAM‐Dependent Carbide Insertion During Nitrogenase Cofactor Assembly journal December 2020
Molybdenum Nitrogenase Catalyzes the Reduction and Coupling of CO to Form Hydrocarbons journal March 2011
A newly discovered role for iron-sulfur clusters journal August 2008
Evidence for one-electron transfer by the Fe protein of nitrogenase journal January 1978
Probing the coordination and function of Fe4S4 modules in nitrogenase assembly protein NifB journal July 2018
The InterPro protein families and domains database: 20 years on journal November 2020
The Critical E 4 State of Nitrogenase Catalysis journal July 2018
Cryo-EM structures provide insight into how E. coli F1Fo ATP synthase accommodates symmetry mismatch journal May 2020
Transcriptional activation of the nitrogenase promoter in vitro: adenosine nucleotides are required for inhibition of NIFA activity by NIFL journal March 1995
Biochemical and genetic analysis of the nifUSVWZM cluster from Azotobacter vinelandii journal October 1989
The Structure and Mechanism of Serine Acetyltransferase from Escherichia coli journal September 2004
The Azotobacter vinelandii nifL-like gene: nucleotide sequence analysis and regulation of expression journal March 1993
On reversible H2 loss upon N2 binding to FeMo-cofactor of nitrogenase journal September 2013

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