Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals

Journal Article · · Journal of the American Chemical Society
DOI:https://doi.org/10.1021/jacs.3c05478· OSTI ID:2419794
 [1];  [2];  [2];  [2];  [3];  [4];  [5];  [6];  [7];  [2];  [2];  [2];  [2]
  1. Department of Chemistry, New York University, New York, New York 10003, United States; OSTI
  2. Department of Chemistry, New York University, New York, New York 10003, United States
  3. IMCA-CAT, Argonne National Lab, Argonne, Illinois 60439, United States
  4. NASA Ames Research Center, Planetary Sciences Branch, Moffett Field, California 94035, United States
  5. Department of Applied Physics and Applied Mathematics, Columbia University, New York, New York 10027, United States
  6. Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, United States
  7. Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
Not provided.
Research Organization:
New York Univ. (NYU), NY (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
SC0007991
OSTI ID:
2419794
Journal Information:
Journal of the American Chemical Society, Journal Name: Journal of the American Chemical Society Journal Issue: 32 Vol. 145; ISSN 0002-7863
Publisher:
American Chemical Society (ACS)
Country of Publication:
United States
Language:
English

References (57)

Highly sensitive “turn-on” fluorescent sensor for Hg2+ in aqueous solution based on structure-switching DNA journal January 2008
Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles journal January 2023
The Rule of Thirds: Controlling Junction Chirality and Polarity in 3D DNA Tiles journal December 2022
3D Hexagonal Arrangement of DNA Tensegrity Triangles journal October 2021
Metal-Ion Selectivity of Chemically Modified Uracil Pairs in DNA Duplexes journal January 2009
Time-resolved structural analysis of an RNA-cleaving DNA catalyst journal December 2021
Structural dynamics of double-stranded DNA with epigenome modification journal December 2020
Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex journal December 2016
From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal journal September 2009
Role of p K a of Nucleobases in the Origins of Chemical Evolution journal February 2012
Synthesis from DNA of a molecule with the connectivity of a cube journal April 1991
Nucleic Acid Architectonics for pH-Responsive DNA Systems and Devices journal January 2022
Designing Higher Resolution Self-Assembled 3D DNA Crystals via Strand Terminus Modifications journal June 2019
The design of a biochip: a self-assembling molecular-scale memory device journal January 1987
Metal-Dependent DNA Base Pairing of 5-Carboxyuracil with Itself and All Four Canonical Nucleobases journal December 2020
Nucleic acid junctions and lattices journal November 1982
Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides journal September 1976
Hachimoji DNA and RNA: A genetic system with eight building blocks journal February 2019
Scattering factors computed from relativistic Dirac–Slater wave functions journal January 1965
Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data journal June 2013
(Un)suitability of the use of pH buffers in biological, biochemical and environmental studies and their interaction with metal ions – a review journal January 2015
A crystallographic study of the binding of 13 metal ions to two related RNA duplexes journal May 2003
Augmented DNA Nanoarchitectures: A Structural Library of 3D Self‐Assembling Tensegrity Triangle Variants journal October 2022
Engineering DNA Crystals toward Studying DNA–Guest Molecule Interactions journal February 2023
The structure of metallo-DNA with consecutive thymine–HgII–thymine base pairs explains positive entropy for the metallo base pair formation journal December 2013
Electronic Level Structure of Silver-Intercalated Cytosine Nanowires journal May 2020
A metallo-DNA nanowire with uninterrupted one-dimensional silver array journal July 2017
A device that operates within a self-assembled 3D DNA crystal journal March 2017
Metal‐Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction journal June 2023
Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-HgII-T Base Pairs journal January 2014
Formation of a Thymine-HgII-Thymine Metal-Mediated DNA Base Pair: Proposal and Theoretical Calculation of the Reaction Pathway journal June 2013
The Formation and Displacement of Ordered DNA Triplexes in Self-Assembled Three-Dimensional DNA Crystals journal February 2023
A Novel DNA Helical Wire Containing HgII‐Mediated T:T and T:G Pairs journal October 2019
Ligand‐pKa Shifts through Metals: Potential Relevance to Ribozyme Chemistry journal August 2008
Crystal structure of a DNA duplex containing four Ag(i) ions in consecutive dinuclear Ag(i)-mediated base pairs: 4-thiothymine–2Ag(i)–4-thiothymine journal January 2017
Divergence and Convergence: Complexity Emerges in Crystal Engineering from an 8-mer DNA journal May 2023
DNA‐Programmable AgAuS‐Primed Conductive Nanowelding Wires‐Up Wet Colloids journal July 2022
Metal Ion/Buffer Interactions journal March 1979
A nanomechanical device based on the B–Z transition of DNA journal January 1999
A Novel Ag I ‐DNA Rod Comprising a One‐Dimensional Array of 11 Silver Ions within a Double Helical Structure journal June 2022
pH-Responsive DNA Motif: From Rational Design to Analytical Applications journal August 2021
Construction and characterization of metal ion-containing DNA nanowires for synthetic biology and nanotechnology journal May 2019
Metal-mediated DNA assembly with ligand-based nucleosides journal April 2017
Effect of Tris, MOPS, and phosphate buffers on the hydrolysis of polyethylene terephthalate films by polyester hydrolases journal July 2016
Mercury II -Mediated Formation of Thymine−Hg II −Thymine Base Pairs in DNA Duplexes journal February 2006
Structure Determination of an Ag I -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with 1 H/ 15 N/ 109 Ag NMR Spectroscopy journal August 2016
pH-Dependence of the thermal stability of metallo-DNA duplexes containing ligand-type 5-hydroxyuracil nucleobases journal October 2016
A DNA Structure Containing Ag I -Mediated G:G and C:C Base Pairs journal July 2017
Concerted dynamics of metallo-base pairs in an A/B-form helical transition journal October 2019
HgII Ion Specifically Binds with T:T Mismatched Base Pair in Duplex DNA journal September 2010
The wending rhombus: Self-assembling 3D DNA crystals journal December 2022
Tunneling or Hopping? A Direct Electrochemical Observation of Electron Transfer in DNA journal October 2022
Effect of cytosine–Ag+–cytosine base pairing on the redox potential of the Ag+/Ag couple and the chemical reduction of Ag+ to Ag by tetrathiafulvalene journal January 2021
Direct Observation of the Double‐Stranded DNA Formation through Metal Ion‐Mediated Base Pairing in the Nanoscale Structure journal December 2018
Protonation/deprotonation energetics of uracil, thymine, and cytosine in water from e.m.f./spectrophotometric measurements journal April 1994
Microhydration of Deprotonated Nucleobases journal May 2016
Highly Symmetric, Self‐Assembling 3D DNA Crystals with Cubic and Trigonal Lattices journal November 2022

Similar Records

Six-Letter DNA Nanotechnology: Incorporation of Z-P Base Pairs into Self-Assembling 3D Crystals
Journal Article · 2024 · Nano Letters · OSTI ID:2475430

Making Engineered 3D DNA Crystals Robust
Journal Article · 2019 · Journal of the American Chemical Society · OSTI ID:1801800

Related Subjects