Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Expanding the Scope of Bacterial CRISPR Activation with PAM-Flexible dCas9 Variants

Journal Article · · ACS Synthetic Biology
 [1];  [2];  [3];  [3];  [4];  [5];  [6];  [3];  [7];  [8]
  1. Molecular Engineering & Sciences Institute and Center for Synthetic Biology, University of Washington, Seattle, Washington98195, United States; OSTI
  2. Molecular Engineering & Sciences Institute and Center for Synthetic Biology, University of Washington, Seattle, Washington98195, United States; Department of Chemical Engineering, University of Washington, Seattle, Washington98195, United States
  3. New York Genome Center, New York, New York10013, United States; Department of Biology, New York University, New York, New York10013, United States
  4. Department of Bioengineering, University of Washington, Seattle, Washington98195, United States
  5. Molecular Engineering & Sciences Institute and Center for Synthetic Biology, University of Washington, Seattle, Washington98195, United States
  6. Center for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts02114, United States; Department of Pathology, Massachusetts General Hospital, Boston, Massachusetts02114, United States; Department of Pathology, Harvard Medical School, Boston, Massachusetts02115, United States
  7. Molecular Engineering & Sciences Institute and Center for Synthetic Biology, University of Washington, Seattle, Washington98195, United States; Department of Chemical Engineering, University of Washington, Seattle, Washington98195, United States; Department of Bioengineering, University of Washington, Seattle, Washington98195, United States
  8. Molecular Engineering & Sciences Institute and Center for Synthetic Biology, University of Washington, Seattle, Washington98195, United States; Department of Chemical Engineering, University of Washington, Seattle, Washington98195, United States; Department of Chemistry, University of Washington, Seattle, Washington98195, United States
Not provided.
Research Organization:
Univ. of Washington, Seattle, WA (United States)
Sponsoring Organization:
USDOE Office of Energy Efficiency and Renewable Energy (EERE)
DOE Contract Number:
EE0008927
OSTI ID:
2418701
Journal Information:
ACS Synthetic Biology, Journal Name: ACS Synthetic Biology Journal Issue: 12 Vol. 11; ISSN 2161-5063
Publisher:
American Chemical Society (ACS)
Country of Publication:
United States
Language:
English

References (49)

Rational engineering of a modular bacterial CRISPR–Cas activation platform with expanded target range journal April 2021
Challenges and opportunities with CRISPR activation in bacteria for data-driven metabolic engineering journal August 2020
CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria journal September 2021
Engineered CRISPRa enables programmable eukaryote-like gene activation in bacteria journal August 2019
CRISPR technologies and the search for the PAM-free nuclease journal January 2021
Programmable CRISPR‐Cas transcriptional activation in bacteria journal July 2020
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression journal February 2013
Dual gene activation and knockout screen reveals directional dependencies in genetic networks journal January 2018
Effective CRISPRa-mediated control of gene expression in bacteria must overcome strict target site requirements journal April 2020
High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects journal January 2016
High-Throughput Screens of PAM-Flexible Cas9 Variants for Gene Knockout and Transcriptional Modulation journal March 2020
Activating natural product synthesis using CRISPR interference and activation systems in Streptomyces journal July 2022
Combined CRISPRi/a-Based Chemical Genetic Screens Reveal that Rigosertib Is a Microtubule-Destabilizing Agent journal October 2017
CRISPRi and CRISPRa Screens in Mammalian Cells for Precision Biology and Medicine journal September 2017
High-Level dCas9 Expression Induces Abnormal Cell Morphology in Escherichia coli journal March 2018
Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications journal August 2016
Genome-wide mapping of transcription start sites yields novel insights into the primary transcriptome of Pseudomonas putida: The primary transcriptome of P. putida KT2440 journal June 2016
Scalable characterization of the PAM requirements of CRISPR–Cas enzymes using HT-PAMDA journal February 2021
Principles of genetic circuit design journal April 2014
Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities journal December 2018
Portable bacterial CRISPR transcriptional activation enables metabolic engineering in Pseudomonas putida journal July 2021
Prospects for engineering dynamic CRISPR–Cas transcriptional circuits to improve bioproduction journal May 2018
Unconstrained genome targeting with near-PAMless engineered CRISPR-Cas9 variants journal March 2020
Synthetic CRISPR-Cas gene activators for transcriptional reprogramming in bacteria journal June 2018
Engineered dCas9 with reduced toxicity in bacteria: implications for genetic circuit design journal October 2018
CRISPR-RNAa: targeted activation of translation using dCas13 fusions to translation initiation factors journal August 2022
CRISPR activation and interference screens decode stimulation responses in primary human T cells journal February 2022
Quantifying cellular capacity identifies gene expression designs with reduced burden journal April 2015
Engineered CRISPR-Cas9 nuclease with expanded targeting space journal August 2018
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli journal August 2006
A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria journal June 2016
Kinetics of dCas9 target search in Escherichia coli journal September 2017
Engineered CRISPR-Cas9 nucleases with altered PAM specificities journal June 2015
Engineering a PAM-flexible SpdCas9 variant as a universal gene repressor journal November 2021
Network motifs: theory and experimental approaches journal June 2007
CAMERS‐B: CRISPR/Cpf1 assisted multiple‐genes editing and regulation system for Bacillus subtilis journal March 2020
Bacterial CRISPR screens for gene function journal February 2021
Regulated Expression of sgRNAs Tunes CRISPRi in E. coli journal May 2018
Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens journal December 2017
Isocost Lines Describe the Cellular Economy of Genetic Circuits journal August 2015
Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood journal August 2017
CRISPRactivation-SMS, a message for PAM sequence independent gene up-regulation in Escherichia coli journal September 2022
Prediction of the sequence-specific cleavage activity of Cas9 variants journal June 2020
Multi-layer CRISPRa/i circuits for dynamic genetic programs in cell-free and bacterial systems journal March 2022
Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system journal June 2013
CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context journal May 2022
Evolved Cas9 variants with broad PAM compatibility and high DNA specificity journal February 2018
Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease journal July 2014
RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 journal November 2018

Similar Records

Expanding the Scope of Bacterial CRISPR Activation with PAM-Flexible dCas9 Variants
Journal Article · 2022 · ACS Synthetic Biology · OSTI ID:2530755

Portable bacterial CRISPR transcriptional activation enables metabolic engineering in Pseudomonas putida
Journal Article · 2021 · Metabolic Engineering · OSTI ID:1848924

Portable bacterial CRISPR transcriptional activation enables metabolic engineering in Pseudomonas putida
Journal Article · 2021 · Metabolic Engineering · OSTI ID:2530754