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Title: Modeling the high-energy electronic state manifold of adenine: Calibration for nonlinear electronic spectroscopy

Abstract

Pump-probe electronic spectroscopy using femtosecond laser pulses has evolved into a standard tool for tracking ultrafast excited state dynamics. Its two-dimensional (2D) counterpart is becoming an increasingly available and promising technique for resolving many of the limitations of pump-probe caused by spectral congestion. The ability to simulate pump-probe and 2D spectra from ab initio computations would allow one to link mechanistic observables like molecular motions and the making/breaking of chemical bonds to experimental observables like excited state lifetimes and quantum yields. From a theoretical standpoint, the characterization of the electronic transitions in the visible (Vis)/ultraviolet (UV), which are excited via the interaction of a molecular system with the incoming pump/probe pulses, translates into the determination of a computationally challenging number of excited states (going over 100) even for small/medium sized systems. A protocol is therefore required to evaluate the fluctuations of spectral properties like transition energies and dipole moments as a function of the computational parameters and to estimate the effect of these fluctuations on the transient spectral appearance. In the present contribution such a protocol is presented within the framework of complete and restricted active space self-consistent field theory and its second-order perturbation theory extensions. The electronic excited statesmore » of adenine have been carefully characterized through a previously presented computational recipe [Nenov et al., Comput. Theor. Chem. 1040–1041, 295-303 (2014)]. A wise reduction of the level of theory has then been performed in order to obtain a computationally less demanding approach that is still able to reproduce the characteristic features of the reference data. Foreseeing the potentiality of 2D electronic spectroscopy to track polynucleotide ground and excited state dynamics, and in particular its expected ability to provide conformational dependent fingerprints in dimeric systems, the performances of the selected reduced level of calculations have been tested in the construction of 2D electronic spectra for the in vacuo adenine monomer and the unstacked adenine homodimer, thereby exciting the L{sub b}/L{sub a} transitions with the pump pulse pair and probing in the Vis to near ultraviolet spectral window.« less

Authors:
; ; ;  [1];  [2];  [3];  [4];  [1];  [5]
  1. Dipartimento di Chimica “G. Ciamician,” Università di Bologna, Via Selmi 2, IT-40126 Bologna (Italy)
  2. Université de Lyon, CNRS, Institut de Chimie de Lyon, École Normale Supérieure de Lyon, 46 Allée d’Italie, F-69364 Lyon Cedex 07 (France)
  3. Dipartimento di Fisica, Politecnico di Milano, IFN-CNR, Piazza Leonardo Da Vinci 32, IT-20133 Milano (Italy)
  4. Department of Chemistry, University of California, Irvine, California 92697-2025 (United States)
  5. (France)
Publication Date:
OSTI Identifier:
22415911
Resource Type:
Journal Article
Resource Relation:
Journal Name: Journal of Chemical Physics; Journal Volume: 142; Journal Issue: 21; Other Information: (c) 2015 AIP Publishing LLC; Country of input: International Atomic Energy Agency (IAEA)
Country of Publication:
United States
Language:
English
Subject:
74 ATOMIC AND MOLECULAR PHYSICS; 37 INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY; ADENINES; CALCULATION METHODS; CHEMICAL BONDS; DIPOLE MOMENTS; ELECTRON SPECTROSCOPY; EXCITED STATES; FLUCTUATIONS; LASER RADIATION; LIFETIME; MONOMERS; NONLINEAR PROBLEMS; PERTURBATION THEORY; PROBES; REDUCTION; SELF-CONSISTENT FIELD; TRANSIENTS; TWO-DIMENSIONAL SYSTEMS; ULTRAVIOLET RADIATION

Citation Formats

Nenov, Artur, E-mail: Artur.Nenov@unibo.it, Giussani, Angelo, Segarra-Martí, Javier, Jaiswal, Vishal K., Rivalta, Ivan, Cerullo, Giulio, Mukamel, Shaul, Garavelli, Marco, E-mail: marco.garavelli@unibo.it, E-mail: marco.garavelli@ens-lyon.fr, and Université de Lyon, CNRS, Institut de Chimie de Lyon, École Normale Supérieure de Lyon, 46 Allée d’Italie, F-69364 Lyon Cedex 07. Modeling the high-energy electronic state manifold of adenine: Calibration for nonlinear electronic spectroscopy. United States: N. p., 2015. Web. doi:10.1063/1.4921016.
Nenov, Artur, E-mail: Artur.Nenov@unibo.it, Giussani, Angelo, Segarra-Martí, Javier, Jaiswal, Vishal K., Rivalta, Ivan, Cerullo, Giulio, Mukamel, Shaul, Garavelli, Marco, E-mail: marco.garavelli@unibo.it, E-mail: marco.garavelli@ens-lyon.fr, & Université de Lyon, CNRS, Institut de Chimie de Lyon, École Normale Supérieure de Lyon, 46 Allée d’Italie, F-69364 Lyon Cedex 07. Modeling the high-energy electronic state manifold of adenine: Calibration for nonlinear electronic spectroscopy. United States. doi:10.1063/1.4921016.
Nenov, Artur, E-mail: Artur.Nenov@unibo.it, Giussani, Angelo, Segarra-Martí, Javier, Jaiswal, Vishal K., Rivalta, Ivan, Cerullo, Giulio, Mukamel, Shaul, Garavelli, Marco, E-mail: marco.garavelli@unibo.it, E-mail: marco.garavelli@ens-lyon.fr, and Université de Lyon, CNRS, Institut de Chimie de Lyon, École Normale Supérieure de Lyon, 46 Allée d’Italie, F-69364 Lyon Cedex 07. 2015. "Modeling the high-energy electronic state manifold of adenine: Calibration for nonlinear electronic spectroscopy". United States. doi:10.1063/1.4921016.
@article{osti_22415911,
title = {Modeling the high-energy electronic state manifold of adenine: Calibration for nonlinear electronic spectroscopy},
author = {Nenov, Artur, E-mail: Artur.Nenov@unibo.it and Giussani, Angelo and Segarra-Martí, Javier and Jaiswal, Vishal K. and Rivalta, Ivan and Cerullo, Giulio and Mukamel, Shaul and Garavelli, Marco, E-mail: marco.garavelli@unibo.it, E-mail: marco.garavelli@ens-lyon.fr and Université de Lyon, CNRS, Institut de Chimie de Lyon, École Normale Supérieure de Lyon, 46 Allée d’Italie, F-69364 Lyon Cedex 07},
abstractNote = {Pump-probe electronic spectroscopy using femtosecond laser pulses has evolved into a standard tool for tracking ultrafast excited state dynamics. Its two-dimensional (2D) counterpart is becoming an increasingly available and promising technique for resolving many of the limitations of pump-probe caused by spectral congestion. The ability to simulate pump-probe and 2D spectra from ab initio computations would allow one to link mechanistic observables like molecular motions and the making/breaking of chemical bonds to experimental observables like excited state lifetimes and quantum yields. From a theoretical standpoint, the characterization of the electronic transitions in the visible (Vis)/ultraviolet (UV), which are excited via the interaction of a molecular system with the incoming pump/probe pulses, translates into the determination of a computationally challenging number of excited states (going over 100) even for small/medium sized systems. A protocol is therefore required to evaluate the fluctuations of spectral properties like transition energies and dipole moments as a function of the computational parameters and to estimate the effect of these fluctuations on the transient spectral appearance. In the present contribution such a protocol is presented within the framework of complete and restricted active space self-consistent field theory and its second-order perturbation theory extensions. The electronic excited states of adenine have been carefully characterized through a previously presented computational recipe [Nenov et al., Comput. Theor. Chem. 1040–1041, 295-303 (2014)]. A wise reduction of the level of theory has then been performed in order to obtain a computationally less demanding approach that is still able to reproduce the characteristic features of the reference data. Foreseeing the potentiality of 2D electronic spectroscopy to track polynucleotide ground and excited state dynamics, and in particular its expected ability to provide conformational dependent fingerprints in dimeric systems, the performances of the selected reduced level of calculations have been tested in the construction of 2D electronic spectra for the in vacuo adenine monomer and the unstacked adenine homodimer, thereby exciting the L{sub b}/L{sub a} transitions with the pump pulse pair and probing in the Vis to near ultraviolet spectral window.},
doi = {10.1063/1.4921016},
journal = {Journal of Chemical Physics},
number = 21,
volume = 142,
place = {United States},
year = 2015,
month = 6
}
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