Accelerating Geostatistical Modeling and Prediction With Mixed-Precision Computations: A High-Productivity Approach With PaRSEC

Abdulah, Sameh; Cao, Qinglei; Pei, Yu; Bosilca, George; Dongarra, Jack; Genton, Marc G.; Keyes, David E.; Ltaief, Hatem; Sun, Ying

doi:10.1109/tpds.2021.3084071

Accelerating Geostatistical Modeling and Prediction With Mixed-Precision Computations: A High-Productivity Approach With PaRSEC

Journal Article · 01 April 2022 · IEEE Transactions on Parallel and Distributed Systems

DOI:https://doi.org/10.1109/tpds.2021.3084071· OSTI ID:1982883

; ; Pei, Yu; ; ; ; ; ;

Not provided.

Research Organization:: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF)

Sponsoring Organization:: USDOE

DOE Contract Number:: AC05-00OR22725

OSTI ID:: 1982883

Journal Information:: IEEE Transactions on Parallel and Distributed Systems, Vol. 33, Issue 4; ISSN 1045-9219

Publisher:: IEEE

Country of Publication:: United States

Language:: English

References (40)

Achieving High Performance on Supercomputers with a Sequential Task-based Programming Model Agullo, Emmanuel; Aumage, Olivier; Faverge, Mathieu IEEE Transactions on Parallel and Distributed Systems https://doi.org/10.1109/TPDS.2017.2766064	journal	January 2017
Separable approximations of space-time covariance matrices Genton, Marc G. Environmetrics, Vol. 18, Issue 7 https://doi.org/10.1002/env.854	journal	January 2007
DAGuE: A generic distributed DAG engine for High Performance Computing Bosilca, George; Bouteiller, Aurelien; Danalis, Anthony Parallel Computing, Vol. 38, Issue 1-2 https://doi.org/10.1016/j.parco.2011.10.003	journal	January 2012
Application of the ParalleX execution model to stencil-based problems Heller, T.; Kaiser, H.; Iglberger, K. Computer Science - Research and Development, Vol. 28, Issue 2-3 https://doi.org/10.1007/s00450-012-0217-1	journal	May 2012
StarPU: a unified platform for task scheduling on heterogeneous multicore architectures Augonnet, Cédric; Thibault, Samuel; Namyst, Raymond Concurrency and Computation: Practice and Experience, Vol. 23, Issue 2 https://doi.org/10.1002/cpe.1631	journal	November 2010
Legion: Expressing locality and independence with logical regions Bauer, Michael; Treichler, Sean; Slaughter, Elliott 2012 SC - International Conference for High Performance Computing, Networking, Storage and Analysis, 2012 International Conference for High Performance Computing, Networking, Storage and Analysis https://doi.org/10.1109/SC.2012.71	conference	November 2012
Numerical linear algebra on emerging architectures: The PLASMA and MAGMA projects Agullo, Emmanuel; Demmel, Jim; Dongarra, Jack Journal of Physics: Conference Series, Vol. 180 https://doi.org/10.1088/1742-6596/180/1/012037	journal	July 2009
ExaGeoStat: A High Performance Unified Software for Geostatistics on Manycore Systems Abdulah, Sameh; Ltaief, Hatem; Sun, Ying IEEE Transactions on Parallel and Distributed Systems, Vol. 29, Issue 12 https://doi.org/10.1109/TPDS.2018.2850749	journal	December 2018
On the use of scale-dependent precision in Earth System modelling: Scale-Dependent Precision in Earth System Modelling Thornes, Tobias; Düben, Peter; Palmer, Tim Quarterly Journal of the Royal Meteorological Society, Vol. 143, Issue 703 https://doi.org/10.1002/qj.2974	journal	January 2017
Mixed Precision Iterative Refinement Techniques for the Solution of Dense Linear Systems Buttari, Alfredo; Dongarra, Jack; Langou, Julie The International Journal of High Performance Computing Applications, Vol. 21, Issue 4 https://doi.org/10.1177/1094342007084026	journal	November 2007
Mixed-precision arithmetic in the ENDGame dynamical core of the Unified Model, a numerical weather prediction and climate model code Maynard, C. M.; Walters, D. N. Computer Physics Communications, Vol. 244 https://doi.org/10.1016/j.cpc.2019.07.002	journal	November 2019
Accelerating the Solution of Linear Systems by Iterative Refinement in Three Precisions Carson, Erin; Higham, Nicholas J. SIAM Journal on Scientific Computing, Vol. 40, Issue 2 https://doi.org/10.1137/17M1140819	journal	January 2018
A Proposal to Extend the OpenMP Tasking Model with Dependent Tasks Duran, Alejandro; Ferrer, Roger; Ayguadé, Eduard International Journal of Parallel Programming, Vol. 37, Issue 3 https://doi.org/10.1007/s10766-009-0101-1	journal	April 2009
Harnessing GPU Tensor Cores for Fast FP16 Arithmetic to Speed up Mixed-Precision Iterative Refinement Solvers Haidar, Azzam; Tomov, Stanimire; Dongarra, Jack SC18: International Conference for High Performance Computing, Networking, Storage and Analysis https://doi.org/10.1109/SC.2018.00050	conference	November 2018
Statistically and Computationally Efficient Estimating Equations for Large Spatial Datasets Sun, Ying; Stein, Michael L. Journal of Computational and Graphical Statistics, Vol. 25, Issue 1 https://doi.org/10.1080/10618600.2014.975230	journal	January 2016
Hierarchical Low Rank Approximation of Likelihoods for Large Spatial Datasets Huang, Huang; Sun, Ying Journal of Computational and Graphical Statistics, Vol. 27, Issue 1 https://doi.org/10.1080/10618600.2017.1356324	journal	January 2018
Mixed-Precision Tomographic Reconstructor Computations on Hardware Accelerators Doucet, Nicolas; Ltaief, Hatem; Gratadour, Damien 2019 IEEE/ACM 9th Workshop on Irregular Applications: Architectures and Algorithms (IA3) https://doi.org/10.1109/IA349570.2019.00011	conference	November 2019
HydroBlocks: a field-scale resolving land surface model for application over continental extents: HydroBlocks Chaney, Nathaniel W.; Metcalfe, Peter; Wood, Eric F. Hydrological Processes, Vol. 30, Issue 20 https://doi.org/10.1002/hyp.10891	journal	August 2016
Efficiency assessment of approximated spatial predictions for large datasets Hong, Yiping; Abdulah, Sameh; Genton, Marc G. Spatial Statistics, Vol. 43 https://doi.org/10.1016/j.spasta.2021.100517	journal	June 2021
Flexible Spatial Models for Kriging and Cokriging Using Moving Averages and the Fast Fourier Transform (FFT) Ver Hoef, Jay M.; Cressie, Noel; Barry, Ronald Paul Journal of Computational and Graphical Statistics, Vol. 13, Issue 2 https://doi.org/10.1198/1061860043498	journal	June 2004
Smoothing Spline Gaussian Regression: More Scalable Computation via Efficient Approximation Kim, Young-Ju; Gu, Chong Journal of the Royal Statistical Society Series B: Statistical Methodology, Vol. 66, Issue 2 https://doi.org/10.1046/j.1369-7412.2003.05316.x	journal	April 2004
Hierarchical algorithms on hierarchical architectures Keyes, D. E.; Ltaief, H.; Turkiyyah, G. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 378, Issue 2166 https://doi.org/10.1098/rsta.2019.0055	journal	January 2020
A fast block low-rank dense solver with applications to finite-element matrices Aminfar, AmirHossein; Ambikasaran, Sivaram; Darve, Eric Journal of Computational Physics, Vol. 304 https://doi.org/10.1016/j.jcp.2015.10.012	journal	January 2016
Scalable Gaussian Process Computations Using Hierarchical Matrices Geoga, Christopher J.; Anitescu, Mihai; Stein, Michael L. Journal of Computational and Graphical Statistics, Vol. 29, Issue 2 https://doi.org/10.1080/10618600.2019.1652616	journal	September 2019
An Efficient Multicore Implementation of a Novel HSS-Structured Multifrontal Solver Using Randomized Sampling Ghysels, Pieter; Li, Xiaoye S.; Rouet, François-Henry SIAM Journal on Scientific Computing, Vol. 38, Issue 5 https://doi.org/10.1137/15M1010117	journal	January 2016
Approximation of integral operators by Green quadrature and nested cross approximation Börm, Steffen; Christophersen, Sven Numerische Mathematik, Vol. 133, Issue 3 https://doi.org/10.1007/s00211-015-0757-y	journal	July 2015
Hierarchical Matrix Operations on GPUs Boukaram, Wajih; Turkiyyah, George; Keyes, David ACM Transactions on Mathematical Software, Vol. 45, Issue 1 https://doi.org/10.1145/3232850	journal	February 2019
The use of imprecise processing to improve accuracy in weather & climate prediction Düben, Peter D.; McNamara, Hugh; Palmer, T. N. Journal of Computational Physics, Vol. 271 https://doi.org/10.1016/j.jcp.2013.10.042	journal	August 2014
Geostatistical Modeling and Prediction Using Mixed Precision Tile Cholesky Factorization Abdulah, Sameh; Ltaief, Hatem; Sun, Ying 2019 IEEE 26th International Conference on High Performance Computing, Data, and Analytics (HiPC) https://doi.org/10.1109/HiPC.2019.00028	conference	December 2019
Covariance Tapering for Likelihood-Based Estimation in Large Spatial Data Sets Kaufman, Cari G.; Schervish, Mark J.; Nychka, Douglas W. Journal of the American Statistical Association, Vol. 103, Issue 484 https://doi.org/10.1198/016214508000000959	journal	December 2008
The Arab world prepares the exascale workforce Keyes, David Communications of the ACM, Vol. 64, Issue 4 https://doi.org/10.1145/3447737	journal	March 2021
Performance of various computers using standard linear equations software Dongarra, Jack J. ACM SIGARCH Computer Architecture News, Vol. 20, Issue 3 https://doi.org/10.1145/141868.141871	journal	June 1992
Gaussian predictive process models for large spatial data sets Banerjee, Sudipto; Gelfand, Alan E.; Finley, Andrew O. Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 70, Issue 4 https://doi.org/10.1111/j.1467-9868.2008.00663.x	journal	September 2008
Kalman Filtering With Intermittent Observations Sinopoli, B.; Schenato, L.; Franceschetti, M. IEEE Transactions on Automatic Control, Vol. 49, Issue 9 https://doi.org/10.1109/TAC.2004.834121	journal	September 2004
Performance Analysis of Tile Low-Rank Cholesky Factorization Using PaRSEC Instrumentation Tools Cao, Qinglei ; Pei, Yu; Herault, Thomas 2019 IEEE/ACM International Workshop on Programming and Performance Visualization Tools (ProTools) https://doi.org/10.1109/ProTools49597.2019.00009	conference	November 2019
Extreme-Scale Task-Based Cholesky Factorization Toward Climate and Weather Prediction Applications Cao, Qinglei; Pei, Yu; Akbudak, Kadir Proceedings of the Platform for Advanced Scientific Computing Conference https://doi.org/10.1145/3394277.3401846	conference	June 2020
PaRSEC: Exploiting Heterogeneity to Enhance Scalability Bosilca, George; Bouteiller, Aurelien; Danalis, Anthony Computing in Science & Engineering, Vol. 15, Issue 6 https://doi.org/10.1109/MCSE.2013.98	journal	November 2013
Parallel Approximation of the Maximum Likelihood Estimation for the Prediction of Large-Scale Geostatistics Simulations Abdulah, Sameh; Ltaief, Hatem; Sun, Ying 2018 IEEE International Conference on Cluster Computing (CLUSTER) https://doi.org/10.1109/CLUSTER.2018.00089	conference	September 2018
PaRSEC in Practice: Optimizing a Legacy Chemistry Application through Distributed Task-Based Execution Danalis, Anthony; Jagode, Heike; Bosilca, George 2015 IEEE International Conference on Cluster Computing https://doi.org/10.1109/CLUSTER.2015.50	conference	September 2015
PTG: An Abstraction for Unhindered Parallelism Danalis, Anthony; Bosilca, George; Bouteiller, Aurelien 2014 Fourth International Workshop on Domain-Specific Languages and High-Level Frameworks for High Performance Computing (WOLFHPC) https://doi.org/10.1109/WOLFHPC.2014.8	conference	November 2014

Similar Records

Modeling and predicting performance of high performance computing applications on hardware accelerators

Journal Article · 2012 · International Journal of High Performance Computing Applications · OSTI ID:1565092

Meswani, Mitesh R.; Carrington, Laura; Unat, Didem; +3 more

Hyperspectral Aquatic Radiative Transfer Modeling Using a High-Performance Cluster Computing-Based Approach

Journal Article · 2012 · GIScience & Remote Sensing · OSTI ID:1042725

Filippi, Anthony M; Bhaduri, Budhendra L; King, Amy L; +2 more

Hyperspectral Aquatic Radiative Transfer Modeling Using a High-Performance Cluster Computing Based Approach

Journal Article · 2012 · GIScience & Remote Sensing · OSTI ID:1037672

Fillippi, Anthony; Bhaduri, Budhendra L; King, Amy L; +2 more

Related Subjects

Computer Science
Engineering

Accelerating Geostatistical Modeling and Prediction With Mixed-Precision Computations: A High-Productivity Approach With PaRSEC

Citation Formats

References (40)

Similar Records

Related Subjects