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Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts
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journal
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December 2011 |
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IMG/M: integrated genome and metagenome comparative data analysis system
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journal
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October 2016 |
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Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)
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journal
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January 2012 |
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Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
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journal
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February 2015 |
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Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
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journal
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March 2011 |
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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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journal
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October 2009 |
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Fast and accurate de novo genome assembly from long uncorrected reads
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journal
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January 2017 |
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Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
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journal
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March 2017 |
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Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer
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September 2015 |
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Trimmomatic: a flexible trimmer for Illumina sequence data
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April 2014 |
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SusE facilitates starch uptake independent of starch binding in B. thetaiotaomicron : SusE promotes starch uptake in
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April 2018 |
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From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus
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October 2018 |
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Analyses of gut microbiota and plasma bile acids enable stratification of patients for antidiabetic treatment
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journal
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November 2017 |
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Adaptive seeds tame genomic sequence comparison
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journal
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January 2011 |
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Mannosidase mechanism: at the intersection of conformation and catalysis
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journal
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June 2020 |
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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November 2012 |
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Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
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journal
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June 2013 |
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Fold and Function of the InlB B-repeat
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journal
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April 2011 |
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Polysaccharide Utilization Loci: Fueling Microbial Communities
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journal
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January 2017 |
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Near-optimal probabilistic RNA-seq quantification
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journal
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April 2016 |
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High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
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journal
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November 2018 |
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A metagenome-wide association study of gut microbiota in type 2 diabetes
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journal
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September 2012 |
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The effect of feeding xanthan gum on colonic function in man: correlation with in vitro determinants of bacterial breakdown
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journal
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May 1993 |
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Structure and Dynamics of a Promiscuous Xanthan Lyase from Paenibacillus nanensis and the Design of Variants with Increased Stability and Activity
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journal
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February 2019 |
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Richness of human gut microbiome correlates with metabolic markers
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journal
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August 2013 |
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
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journal
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November 2009 |
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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
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journal
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April 2012 |
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Gut Microbiome Biomarkers and Functional Diversity Within an Amazonian Semi-Nomadic Hunter–Gatherer Group
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journal
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July 2019 |
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DOE JGI Metagenome Workflow
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journal
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June 2021 |
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A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
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journal
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January 2014 |
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The gut microbiome of healthy Japanese and its microbial and functional uniqueness
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journal
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March 2016 |
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Incidence of Celiac Disease Is Increasing Over Time: A Systematic Review and Meta-analysis
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journal
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February 2020 |
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Carbohydrate-binding domains: multiplicity of biological roles
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journal
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November 2009 |
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Cutadapt removes adapter sequences from high-throughput sequencing reads
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journal
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May 2011 |
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Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes
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journal
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November 2012 |
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Divergent short-chain fatty acid production and succession of colonic microbiota arise in fermentation of variously-sized wheat bran fractions
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journal
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November 2018 |
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Experimental models to study intestinal microbes–mucus interactions in health and disease
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journal
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June 2019 |
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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
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journal
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November 2021 |
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The carbohydrate-active enzymes database (CAZy) in 2013
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journal
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November 2013 |
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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journal
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January 2015 |
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The Food Additive Maltodextrin Promotes Endoplasmic Reticulum Stress–Driven Mucus Depletion and Exacerbates Intestinal Inflammation
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journal
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January 2019 |
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Specificities and Synergistic Actions of Novel PL8 and PL7 Alginate Lyases from the Marine Fungus Paradendryphiella salina
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journal
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January 2021 |
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Xanthan gum production under several operational conditions: molecular structure and rheological properties☆
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journal
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February 2000 |
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Prokka: rapid prokaryotic genome annotation
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journal
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March 2014 |
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Minimap2: pairwise alignment for nucleotide sequences
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journal
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May 2018 |
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HTSeq--a Python framework to work with high-throughput sequencing data
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journal
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September 2014 |
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MET-activating Residues in the B-repeat of the Listeria monocytogenes Invasion Protein InlB
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journal
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December 2016 |
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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
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journal
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October 2012 |
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Fast gapped-read alignment with Bowtie 2
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journal
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March 2012 |
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PULDB: the expanded database of Polysaccharide Utilization Loci
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journal
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October 2017 |
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A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation
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journal
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October 2018 |
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Data Analysis
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book
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June 2016 |
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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
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journal
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August 2013 |
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Alginate lyase: Review of major sources and classification, properties, structure-function analysis and applications
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journal
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April 2015 |
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Unusual Enzymatic Glycoside Cleavage Mechanisms
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journal
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August 2013 |
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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journal
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October 2020 |
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Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies
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journal
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June 2011 |
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The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level
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journal
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June 2018 |
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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journal
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May 2015 |
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BEDTools: a flexible suite of utilities for comparing genomic features
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journal
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January 2010 |
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The use of hot Phenol in Preparing dna
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journal
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December 1965 |
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Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers
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journal
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January 2019 |
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Dietary trehalose enhances virulence of epidemic Clostridium difficile
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journal
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January 2018 |
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Properties and applications of xanthan gum
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journal
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January 1998 |
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Pfam: The protein families database in 2021
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journal
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October 2020 |
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Xanthan gum: production, recovery, and properties
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journal
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November 2000 |
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metaSPAdes: a new versatile metagenomic assembler
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March 2017 |
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Reshaping Data with the reshape Package
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January 2007 |
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Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon
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journal
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February 2019 |
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Proteomic Analysis of the Xanthan-Degrading Pathway of Microbacterium sp. XT11
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journal
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November 2019 |
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Characterization of an acetyl esterase from Myceliophthora thermophila C1 able to deacetylate xanthan
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journal
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October 2014 |
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Strains, functions and dynamics in the expanded Human Microbiome Project
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journal
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September 2017 |
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The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
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journal
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July 2015 |
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Comparison of xanthans by the relative abundance of its six constituent repeating units
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journal
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October 2013 |
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BUSCO: Assessing Genome Assembly and Annotation Completeness
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book
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January 2019 |
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A single sulfatase is required to access colonic mucin by a gut bacterium
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journal
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October 2021 |
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A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
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journal
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November 2016 |
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Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
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journal
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August 2017 |
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Crystal Structure of Bacillus sp. GL1 Xanthan Lyase, Which Acts on the Side Chains of Xanthan
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journal
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February 2003 |
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Analysis of a New Family of Widely Distributed Metal-independent α-Mannosidases Provides Unique Insight into the Processing of N -Linked Glycans
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journal
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March 2011 |
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Novel Endotype Xanthanase from Xanthan-Degrading Microbacterium sp. Strain XT11
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journal
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November 2018 |
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Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients
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journal
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June 2017 |
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Structural Dynamics and Catalytic Properties of a Multimodular Xanthanase
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journal
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May 2018 |
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Microbial System for Polysaccharide Depolymerization: Enzymatic Route for Xanthan Depolymerization by Bacillus sp. Strain GL1
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journal
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June 1999 |
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Dietary Xanthan Gum Alters Antibiotic Efficacy against the Murine Gut Microbiota and Attenuates Clostridioides difficile Colonization
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journal
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February 2020 |
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A human gut microbial gene catalogue established by metagenomic sequencing
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journal
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March 2010 |
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Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria
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journal
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March 2022 |
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Metabolic Capability of a Predominant Halanaerobium sp. in Hydraulically Fractured Gas Wells and Its Implication in Pipeline Corrosion
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journal
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June 2016 |
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Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention
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journal
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June 2017 |
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A Pyruvated Mannose-Specific Xanthan Lyase Involved in Xanthan Degradation by Paenibacillus alginolyticus XL-1
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journal
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June 1999 |
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Magic-BLAST, an accurate RNA-seq aligner for long and short reads
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journal
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July 2019 |