Mechanistic Picture for Monomeric Human Fibroblast Growth Factor 1 Stabilization by Heparin Binding

Govind Kumar, Vivek; Agrawal, Shilpi; Kumar, Thallapuranam Krishnaswamy Suresh; Moradi, Mahmoud

doi:10.1021/acs.jpcb.1c07772

Mechanistic Picture for Monomeric Human Fibroblast Growth Factor 1 Stabilization by Heparin Binding

Journal Article · 11 November 2021 · Journal of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces and Biophysical Chemistry

DOI:https://doi.org/10.1021/acs.jpcb.1c07772· OSTI ID:1977983

Govind Kumar, Vivek ^[1]; Agrawal, Shilpi ^[1]; Kumar, Thallapuranam Krishnaswamy Suresh ^[1]; ^[1]

Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701, United States

Not provided.

Research Organization:: Univ. of Arkansas, Fayetteville, AR (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

DOE Contract Number:: FG02-01ER15161

OSTI ID:: 1977983

Journal Information:: Journal of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces and Biophysical Chemistry, Vol. 125, Issue 46; ISSN 1520-6106

Publisher:: American Chemical Society

Country of Publication:: United States

Language:: English

References (40)

Real-time submillisecond single-molecule FRET dynamics of freely diffusing molecules with liposome tethering Kim, Jae-Yeol; Kim, Cheolhee; Lee, Nam Ki Nature Communications, Vol. 6, Issue 1 https://doi.org/10.1038/ncomms7992	journal	April 2015
Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics Srivastava, Ashutosh; Nagai, Tetsuro; Srivastava, Arpita International Journal of Molecular Sciences, Vol. 19, Issue 11 https://doi.org/10.3390/ijms19113401	journal	October 2018
Salt Bridge Swapping in the EXXERFXYY Motif of Proton-coupled Oligopeptide Transporters Aduri, Nanda G.; Prabhala, Bala K.; Ernst, Heidi A. Journal of Biological Chemistry, Vol. 290, Issue 50 https://doi.org/10.1074/jbc.M115.675603	journal	December 2015
Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT Doki, S.; Kato, H. E.; Solcan, N. Proceedings of the National Academy of Sciences, Vol. 110, Issue 28 https://doi.org/10.1073/pnas.1301079110	journal	June 2013
What Can and Cannot Be Learned from Molecular Dynamics Simulations of Bacterial Proton-Coupled Oligopeptide Transporter GkPOT? Immadisetty, Kalyan; Hettige, Jeevapani; Moradi, Mahmoud The Journal of Physical Chemistry B, Vol. 121, Issue 15 https://doi.org/10.1021/acs.jpcb.6b09733	journal	December 2016
An atomic resolution structure for human fibroblast growth factor 1 Bernett, Matthew J.; Somasundaram, Thayumanasamy; Blaber, Michael Proteins: Structure, Function, and Bioinformatics, Vol. 57, Issue 3 https://doi.org/10.1002/prot.20239	journal	July 2004
Cellular signaling by fibroblast growth factor receptors Eswarakumar, V. P.; Lax, I.; Schlessinger, J. Cytokine & Growth Factor Reviews, Vol. 16, Issue 2 https://doi.org/10.1016/j.cytogfr.2005.01.001	journal	April 2005
The FGF family: biology, pathophysiology and therapy Beenken, Andrew; Mohammadi, Moosa Nature Reviews Drug Discovery, Vol. 8, Issue 3 https://doi.org/10.1038/nrd2792	journal	March 2009
Endocrine FGFs and Klothos: emerging concepts Kuro-o, Makoto Trends in Endocrinology & Metabolism, Vol. 19, Issue 7 https://doi.org/10.1016/j.tem.2008.06.002	journal	September 2008
FGF binding and FGF receptor activation by synthetic heparan-derived di- and trisaccharides Ornitz, D.; Herr, A.; Nilsson, M. Science, Vol. 268, Issue 5209 https://doi.org/10.1126/science.7536345	journal	April 1995
Structural basis for fibroblast growth factor receptor activation Mohammadi, Moosa; Olsen, Shaun K.; Ibrahimi, Omar A. Cytokine & Growth Factor Reviews, Vol. 16, Issue 2 https://doi.org/10.1016/j.cytogfr.2005.01.008	journal	April 2005
Structural and Functional Diversity in the FGf Receptor Multigene Family Johnson, Daniel E.; Williams, Lewis T. Advances in Cancer Research https://doi.org/10.1016/S0065-230X(08)60821-0	book	January 1992
Heparan sulfate proteoglycans are essential for FGF receptor signaling during Drosophila embryonic development Lin, X.; Buff, E. M.; Perrimon, N. Development, Vol. 126, Issue 17 https://doi.org/10.1242/dev.126.17.3715	journal	September 1999
Cell surface, heparin-like molecules are required for binding of basic fibroblast growth factor to its high affinity receptor Yayon, Avner; Klagsbrun, Michael; Esko, Jeffrey D. Cell, Vol. 64, Issue 4 https://doi.org/10.1016/0092-8674(91)90512-W	journal	February 1991
Requirement of heparan sulfate for bFGF-mediated fibroblast growth and myoblast differentiation Rapraeger, A.; Krufka, A.; Olwin, B. Science, Vol. 252, Issue 5013 https://doi.org/10.1126/science.1646484	journal	June 1991
Growth factors in the extracellular matrix Taipale, Jussi; Keski‐Oja, Jorma The FASEB Journal, Vol. 11, Issue 1 https://doi.org/10.1096/fasebj.11.1.9034166	journal	January 1997
The Heparan Sulfate–Fibroblast Growth Factor Family: Diversity of Structure and Function McKeehan, Wallace L.; Wang, Fen; Kan, Mikio Progress in Nucleic Acid Research and Molecular Biology https://doi.org/10.1016/S0079-6603(08)61031-4	book	January 1997
Thermodynamic Characterization of Mutants of Human Fibroblast Growth Factor 1 with an Increased Physiological Half-Life ^† Culajay, Juan F.; Blaber, Sachiko I.; Khurana, Archana Biochemistry, Vol. 39, Issue 24 https://doi.org/10.1021/bi9927742	journal	June 2000
Development and application of site mapping methods for the design of glycosaminoglycans Agostino, Mark; Gandhi, Neha S.; Mancera, Ricardo L. Glycobiology, Vol. 24, Issue 9 https://doi.org/10.1093/glycob/cwu045	journal	May 2014
Structural view of glycosaminoglycan–protein interactions Imberty, Anne; Lortat-Jacob, Hugues; Pérez, Serge Carbohydrate Research, Vol. 342, Issue 3-4 https://doi.org/10.1016/j.carres.2006.12.019	journal	February 2007
Detection of 2-O-Sulfated Iduronate and N-Acetylglucosamine Units in Heparan Sulfate by an Antibody Selected against Acharan Sulfate (IdoA2S-GlcNAc) ten Dam, Gerdy B.; van de Westerlo, Els M. A.; Smetsers, Toon F. C. M. Journal of Biological Chemistry, Vol. 279, Issue 37 https://doi.org/10.1074/jbc.M404166200	journal	September 2004
Computational drill down on FGF1-heparin interactions through methodological evaluation Babik, Sándor; Samsonov, Sergey A.; Pisabarro, M. Teresa Glycoconjugate Journal, Vol. 34, Issue 3 https://doi.org/10.1007/s10719-016-9745-4	journal	November 2016
Importance of the polarity of the glycosaminoglycan chain on the interaction with FGF-1 Muñoz-García, Juan C.; García-Jiménez, M. José; Carrero, Paula Glycobiology, Vol. 24, Issue 11 https://doi.org/10.1093/glycob/cwu071	journal	July 2014
Structural specificity of heparin binding in the fibroblast growth factor family of proteins Raman, R.; Venkataraman, G.; Ernst, S. Proceedings of the National Academy of Sciences, Vol. 100, Issue 5 https://doi.org/10.1073/pnas.0437842100	journal	February 2003
Sulfation pattern in glycosaminoglycan: Does it have a code? Habuchi, Hiroko; Habuchi, Osami; Kimata, Koji Glycoconjugate Journal, Vol. 21, Issue 1/2 https://doi.org/10.1023/B:GLYC.0000043747.87325.5e	journal	January 2004
Sulfation patterns of glycosaminoglycans encode molecular recognition and activity Gama, Cristal I.; Tully, Sarah E.; Sotogaku, Naoki Nature Chemical Biology, Vol. 2, Issue 9 https://doi.org/10.1038/nchembio810	journal	July 2006
Structure of a heparin-linked biologically active dimer of fibroblast growth factor DiGabriele, Anna D.; Lax, Irit; Chen, Denise I. Nature, Vol. 393, Issue 6687 https://doi.org/10.1038/31741	journal	June 1998
Structural studies of the binding of the anti-ulcer drug sucrose octasulfate to acidic fibroblast growth factor Zhu, Xiaotian; Hsu, Barbara T.; Rees, Douglas C. Structure, Vol. 1, Issue 1 https://doi.org/10.1016/0969-2126(93)90006-3	journal	September 1993
Solution NMR structure of a human FGF-1 monomer, activated by a hexasaccharide heparin-analogue: Solution NMR structure of hexasaccharide-FGF-1 Canales, Angeles; Lozano, Rosa; López-Méndez, Blanca FEBS Journal, Vol. 273, Issue 20 https://doi.org/10.1111/j.1742-4658.2006.05474.x	journal	September 2006
The structure of human acidic fibroblast growth factor and its interaction with heparin Copeland, Robert A.; Ji, Hanlee; Halfpenny, Anne J. Archives of Biochemistry and Biophysics, Vol. 289, Issue 1 https://doi.org/10.1016/0003-9861(91)90441-K	journal	August 1991
Biophysical and structural analysis of human acidic fibroblast growth factor Blaber, Michael; Adamek, Daniel H.; Popovic, Aleksandar Techniques in Protein Chemistry https://doi.org/10.1016/S1080-8914(97)80073-7	book	January 1997
Careless talk costs lives: fibroblast growth factor receptor signalling and the consequences of pathway malfunction Carter, Edward P.; Fearon, Abbie E.; Grose, Richard P. Trends in Cell Biology, Vol. 25, Issue 4 https://doi.org/10.1016/j.tcb.2014.11.003	journal	April 2015
Exploring mechanisms of FGF signalling through the lens of structural biology Goetz, Regina; Mohammadi, Moosa Nature Reviews Molecular Cell Biology, Vol. 14, Issue 3 https://doi.org/10.1038/nrm3528	journal	February 2013
Scalable molecular dynamics with NAMD Phillips, James C.; Braun, Rosemary; Wang, Wei Journal of Computational Chemistry, Vol. 26, Issue 16, p. 1781-1802 https://doi.org/10.1002/jcc.20289	journal	January 2005
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ ₁ and χ ₂ Dihedral Angles Best, Robert B.; Zhu, Xiao; Shim, Jihyun Journal of Chemical Theory and Computation, Vol. 8, Issue 9 https://doi.org/10.1021/ct300400x	journal	August 2012
Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations Jo, Sunhwan; Kim, Taehoon; Im, Wonpil PLoS ONE, Vol. 2, Issue 9 https://doi.org/10.1371/journal.pone.0000880	journal	September 2007
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field Lee, Jumin; Cheng, Xi; Swails, Jason M. Journal of Chemical Theory and Computation, Vol. 12, Issue 1 https://doi.org/10.1021/acs.jctc.5b00935	journal	December 2015
Constant pressure molecular dynamics algorithms Martyna, Glenn J.; Tobias, Douglas J.; Klein, Michael L. The Journal of Chemical Physics, Vol. 101, Issue 5 https://doi.org/10.1063/1.467468	journal	September 1994
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems Darden, Tom; York, Darrin; Pedersen, Lee The Journal of Chemical Physics, Vol. 98, Issue 12 https://doi.org/10.1063/1.464397	journal	June 1993
VMD: Visual molecular dynamics Humphrey, William; Dalke, Andrew; Schulten, Klaus Journal of Molecular Graphics, Vol. 14, Issue 1 https://doi.org/10.1016/0263-7855(96)00018-5	journal	February 1996

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