Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Machine Learning to Predict Diels–Alder Reaction Barriers from the Reactant State Electron Density

Journal Article · · Journal of Chemical Theory and Computation
 [1];  [1];  [1];  [2]
  1. Department of Chemistry and Biochemistry, University of California, Los Angeles, 607 Charles E. Young Drive East, Los Angeles, California 90095-1569, United States
  2. Department of Chemistry and Biochemistry, University of California, Los Angeles, 607 Charles E. Young Drive East, Los Angeles, California 90095-1569, United States; California NanoSystems Institute, University of California, Los Angeles, 570 Westwood Plaza, Los Angeles, California 90095-1569, United States

Not provided.

Research Organization:
Krell Institute, Ames, IA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
SC0021110
OSTI ID:
1977910
Journal Information:
Journal of Chemical Theory and Computation, Vol. 17, Issue 10; ISSN 1549-9618
Publisher:
American Chemical Society
Country of Publication:
United States
Language:
English

References (111)

Development of transition-state theory July 1983
Transition State Theory October 1981
Enzymatic Catalysis and Transition-State Theory April 1973
Current status of transition-state theory July 1983
On the Theory of Oxidation‐Reduction Reactions Involving Electron Transfer. I May 1956
On the Theory of Oxidation‐Reduction Reactions Involving Electron Transfer. II. Applications to Data on the Rates of Isotopic Exchange Reactions April 1957
On the Theory of Oxidation‐Reduction Reactions Involving Electron Transfer. III. Applications to Data on the Rates of Organic Redox Reactions April 1957
Superlinearly converging dimer method for transition state search January 2008
Improving the efficiency of the NEB reaction path finding algorithm January 2007
A scaled hypersphere search method for the topography of reaction pathways on the potential energy surface January 2004
A growing string method for determining transition states: Comparison to the nudged elastic band and string methods May 2004
A doubly nudged elastic band method for finding transition states February 2004
Adapting the nudged elastic band method for determining minimum-energy paths of chemical reactions in enzymes May 2004
A generalized synchronous transit method for transition state location October 2003
A flexible nudged elastic band program for optimization of minimum energy pathways usingab initio electronic structure methods April 2003
A temperature-dependent nudged-elastic-band algorithm June 2003
A super-linear minimization scheme for the nudged elastic band method December 2003
Adaptive nudged elastic band approach for transition state calculation September 2002
Finding transition states using reduced potential-energy surfaces May 2001
Finding the transition state without initial guess: The growing string method for Newton trajectory to isomerization and enantiomerization reaction of alanine dipeptide and poly(15)alanine August 2007
A genetic algorithm based technique for locating first-order saddle point using a gradient dominated recipe March 2000
Locating critical points on multi-dimensional surfaces by genetic algorithm: test cases including normal and perturbed argon clusters March 1999
Transition path sampling and the calculation of rate constants February 1998
A combined method for determining reaction paths, minima, and transition state geometries July 1997
Finding transition states using contangency curves June 1997
A gradient-only algorithm for tracing a reaction path uphill to the saddle of a potential energy surface May 1996
Searching for transition states: The line - then - plane ( LTP ) approach: SEARCHING FOR TRANSITION STATES September 1995
Direct inversion in the iterative subspace‐induced acceleration of the ridge method for finding transition states October 1995
A new method to calculate reaction paths for conformation transitions of large molecules May 1994
Locating transition states by quadratic image gradient descent on potential energy surfaces August 1994
Simplified and improved string method for computing the minimum energy paths in barrier-crossing events April 2007
Ridge method for finding saddle points on potential energy surfaces April 1993
Transition-state optimizations by trust-region image minimization August 1991
Walking on potential energy surfaces January 1990
A new technique to calculate steepest descent paths in flexible polyatomic systems January 1990
Finding saddles on multidimensional potential surfaces May 1988
An efficient algorithm for the approximate location of transition structures in a diabatic surface formalism September 1986
Locating transition states March 1984
Optimization of equilibrium geometries and transition structures July 1982
On finding transition states September 1981
Analysis of an energy minimization method for locating transition states on potential energy hypersurfaces March 1980
A Stability Boundary Based Method for Finding Saddle Points on Potential Energy Surfaces April 2006
Reaction Paths on Multidimensional Energy Hypersurfaces January 1980
Location of saddle points and minimum energy paths by a constrained simplex optimization procedure January 1979
The synchronous-transit method for determining reaction pathways and locating molecular transition states July 1977
On the calculation of transition states October 1975
Searching for Saddle Points by Using the Nudged Elastic Band Method:  An Implementation for Gas-Phase Systems May 2006
A new approach for finding a transition state connecting a reactant and a product without initial guess: applications of the scaled hypersphere search method to isomerization reactions of HCN, (H2O)2, and alanine dipeptide March 2005
Efficient methods for finding transition states in chemical reactions: Comparison of improved dimer method and partitioned rational function optimization method December 2005
Finding pathways between distant local minima June 2005
Comparison of methods for finding saddle points without knowledge of the final states November 2004
Automated Transition State Search and Its Application to Diverse Types of Organic Reactions October 2017
Machine learning dihydrogen activation in the chemical space surrounding Vaska's complex January 2020
Predicting Catalytic Activity of Nanoparticles by a DFT-Aided Machine-Learning Algorithm August 2017
Machine learning meets volcano plots: computational discovery of cross-coupling catalysts January 2018
Predicting Chemical Reaction Barriers with a Machine Learning Model March 2019
Finding Reactive Configurations: A Machine Learning Approach for Estimating Energy Barriers Applied to Sirtuin 5 November 2019
Charge Density in Enzyme Active Site as a Descriptor of Electrostatic Preorganization February 2019
Heterogeneous Intramolecular Electric Field as a Descriptor of Diels–Alder Reactivity February 2021
Electron-density descriptors as predictors in quantitative structure–activity/property relationships and drug design June 2011
Estimation of p K a Using Quantum Topological Molecular Similarity Descriptors:  Application to Carboxylic Acids, Anilines and Phenols September 2003
Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential April 2014
Computation of Relative Bond Dissociation Enthalpies (ΔBDE) of Phenolic Antioxidants from Quantum Topological Molecular Similarity (QTMS) April 2006
The cytotoxicity of ortho alkyl substituted 4-X-phenols: A QSAR based on theoretical bond lengths and electron densities March 2006
Bond Bundles and the Origins of Functionality August 2011
Toward a Density-Based Representation of Reactivity:  S N 2 Reaction January 2001
The influence of zero-flux surface motion on chemical reactivity January 2016
Inhomogeneous Electron Gas November 1964
Transition State Distortion Energies Correlate with Activation Energies of 1,4-Dihydrogenations and Diels−Alder Cycloadditions of Aromatic Molecules March 2009
Computational Investigation of the Competition between the Concerted Diels–Alder Reaction and Formation of Diradicals in Reactions of Acrylonitrile with Nonpolar Dienes June 2013
Hyperconjugative, Secondary Orbital, Electrostatic, and Steric Effects on the Reactivities and Endo and Exo Stereoselectivities of Cyclopropene Diels–Alder Reactions December 2016
Hyperconjugative Aromaticity and Antiaromaticity Control the Reactivities and π-Facial Stereoselectivities of 5-Substituted Cyclopentadiene Diels–Alder Cycloadditions November 2018
Lewis Acid Catalysis Alters the Shapes and Products of Bis-Pericyclic Diels−Alder Transition States March 2007
The Origin of the Halogen Effect on Reactivity and Reversibility of Diels–Alder Cycloadditions Involving Furan February 2006
Diels–Alder Reactivities of Strained and Unstrained Cycloalkenes with Normal and Inverse-Electron-Demand Dienes: Activation Barriers and Distortion/Interaction Analysis October 2013
Theoretical Elucidation of the Origins of Substituent and Strain Effects on the Rates of Diels–Alder Reactions of 1,2,4,5-Tetrazines July 2014
Origins of Stereoselectivity in Diels−Alder Cycloadditions Catalyzed by Chiral Imidazolidinones February 2006
Experimental Diels-Alder Reactivities of Cycloalkenones and Cyclic Dienes Explained through Transition-State Distortion Energies September 2011
Hydrogen Bonding Catalysis Operates by Charge Stabilization in Highly Polar Diels−Alder Reactions January 2007
Diels−Alder Reactions of Cyclopentadiene and 9,10-Dimethylanthracene with Cyanoalkenes:  The Performance of Density Functional Theory and Hartree−Fock Calculations for the Prediction of Substituent Effects February 2006
Origins of Stereoselectivity in the trans Diels−Alder Paradigm June 2010
Diels−Alder Exo Selectivity in Terminal-Substituted Dienes and Dienophiles: Experimental Discoveries and Computational Explanations January 2009
Quantum topology of molecular charge distributions. III. The mechanics of an atom in a molecule September 1980
Atoms in molecules January 1985
Impact of scaffold rigidity on the design and evolution of an artificial Diels-Alderase May 2014
Hybrid Dynamics Simulation Engine for Metalloproteins August 2012
Density‐functional thermochemistry. III. The role of exact exchange April 1993
Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density January 1988
Accurate spin-dependent electron liquid correlation energies for local spin density calculations: a critical analysis August 1980
Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields November 1994
Self‐Consistent Molecular‐Orbital Methods. IX. An Extended Gaussian‐Type Basis for Molecular‐Orbital Studies of Organic Molecules January 1971
Self—Consistent Molecular Orbital Methods. XII. Further Extensions of Gaussian—Type Basis Sets for Use in Molecular Orbital Studies of Organic Molecules March 1972
Self‐consistent molecular orbital methods. XXIII. A polarization‐type basis set for second‐row elements October 1982
Conceptual, Qualitative, and Quantitative Theories of 1,3-Dipolar and Diels–Alder Cycloadditions Used in Synthesis November 2006
Electronic structure calculations on workstation computers: The program system turbomole October 1989
Improvements on the direct SCF method: Improved Direct SCF Method January 1989
Efficient evaluation of three-center two-electron integrals over Gaussian functions January 2004
Efficient molecular numerical integration schemes January 1995
Auxiliary basis sets for main row atoms and transition metals and their use to approximate Coulomb potentials October 1997
Auxiliary basis sets to approximate Coulomb potentials June 1995
Fast evaluation of the Coulomb potential for electron densities using multipole accelerated resolution of identity approximation May 2003
Nuclear second analytical derivative calculations using auxiliary basis set expansions January 2004
Performance of parallel TURBOMOLE for density functional calculations November 1998
Geometry optimization in generalized natural internal coordinates November 1999
Benchmarking the performance of spin-component scaled CC2 in ground and electronically excited states January 2008
A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu April 2010
Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy January 2005
COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient January 1993
Computational studies of dielectric permittivity effects on chemical shifts of alanine dipeptide September 2012
Discrete Molecular Dynamics: An Efficient And Versatile Simulation Method For Fine Protein Characterization February 2012
Discrete molecular dynamics: Discrete Molecular Dynamics January 2011