Identification of the Proton Pathway in Bacterial Reaction Centers: Decrease of Proton Transfer Rate by Mutation of Surface Histidines at H126 and H128 and Chemical Rescue by Imidazole Identifies the Initial Proton Donors
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November 2001 |
The Grotthuss mechanism
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October 1995 |
Protons and Hydroxide Ions in Aqueous Systems
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April 2016 |
Calculated Protein and Proton Motions Coupled to Electron Transfer: Electron Transfer from Q A - to Q B in Bacterial Photosynthetic Reaction Centers †
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June 1999 |
Modeling the Effects of Mutations on the Free Energy of the First Electron Transfer from QA- to QB in Photosynthetic Reaction Centers
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April 2000 |
Crystal structure of the entire respiratory complex I
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February 2013 |
Electrostatic calculations of amino acid titration and electron transfer, Q-AQB-->QAQ-B, in the reaction center
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June 1995 |
Protein-water hydrogen-bond networks of G protein-coupled receptors: Graph-based analyses of static structures and molecular dynamics
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December 2020 |
Extended protein/water H-bond networks in photosynthetic water oxidation
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August 2012 |
Network analysis of a proposed exit pathway for protons to the P-side of cytochrome c oxidase
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October 2018 |
Identifying the proton loading site cluster in the ba cytochrome c oxidase that loads and traps protons
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October 2020 |
Understanding the cytochrome bc complexes by what they don't do. The Q-cycle at 30
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January 2006 |
Charge separation in Photosystem II: A comparative and evolutionary overview
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January 2012 |
Anab initio force field for the cofactors of bacterial photosynthesis
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January 2002 |
Biological Water Oxidation
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March 2013 |
Et tu, Grotthuss! and other unfinished stories
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August 2006 |
The Cytochrome bc 1 Complex and its Homologue the b 6 f Complex: Similarities and Differences
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January 2004 |
Philosophy of voltage-gated proton channels
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March 2014 |
Structure of the protein subunits in the photosynthetic reaction centre of Rhodopseudomonas viridis at 3Å resolution
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December 1985 |
Symmetry-related proton transfer pathways in respiratory complex I
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July 2017 |
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
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July 2017 |
Investigating the Many Roles of Internal Water in Cytochrome c Oxidase
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July 2018 |
Arginine: Its p K a value revisited : p
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March 2015 |
Unraveling the mechanism of proton translocation in the extracellular half-channel of bacteriorhodopsin: Proton Translocation in Bacteriorhodopsin
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March 2016 |
Mechanism of Proton-Coupled Electron Transfer for Quinone (Q B ) Reduction in Reaction Centers of Rb . Sphaeroides
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January 1996 |
Observation of the Protonated Semiquinone Intermediate in Isolated Reaction Centers from Rhodobacter sphaeroides: Implications for the Mechanism of Electron and Proton Transfer in Proteins
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August 1999 |
Modification of quinone electrochemistry by the proteins in the biological electron transfer chains: examples from photosynthetic reaction centers
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October 2008 |
Theoretical Perspectives on Proton-Coupled Electron Transfer Reactions
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April 2001 |
Variation of Ser-L223 Hydrogen Bonding with the QB Redox State in Reaction Centers from Rhodobacter sphaeroides
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June 2004 |
Energetics of Proton Transfer Pathways in Reaction Centers from Rhodobacter sphaeroides
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April 2005 |
Redox Potential of Quinones in Photosynthetic Reaction Centers from Rhodobacter sphaeroides : Dependence on Protonation of Glu-L212 and Asp-L213
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March 2003 |
CHARMM-GUI: A web-based graphical user interface for CHARMM
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March 2008 |
Comparison of simple potential functions for simulating liquid water
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July 1983 |
Long-range proton-coupled electron transfer in biological energy conversion: towards mechanistic understanding of respiratory complex I
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April 2018 |
Proton-Coupled Electron Transfer in Cytochrome Oxidase
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December 2010 |
Proton exit pathways surrounding the oxygen evolving complex of photosystem II
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August 2021 |
Photosystem II: Structure and mechanism of the water:plastoquinone oxidoreductase
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July 2007 |
Hydrogen bond network analysis reveals the pathway for the proton transfer in the E-channel of T. thermophilus Complex I
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October 2020 |
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
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June 2010 |
Profile Hidden Markov Models for Analyzing Similarities and Dissimilarities in the Bacterial Reaction Center and Photosystem II
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January 2009 |
Proton-Transfer Pathways in Photosynthetic Reaction Centers Analyzed by Profile Hidden Markov Models and Network Calculations
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May 2009 |
Calculated coupling of electron and proton transfer in the photosynthetic reaction center of Rhodopseudomonas viridis
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June 1996 |
A Comparison of Stigmatellin Conformations, Free and Bound to the Photosynthetic Reaction Center and the Cytochrome bc1 Complex
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April 2007 |
Energetics and Kinetics of Primary Charge Separation in Bacterial Photosynthesis
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journal
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August 2008 |
Functional proton transfer pathways in the heme–copper oxidase superfamily
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April 2012 |
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field
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December 2015 |
Relationship between rate and free energy difference for electron transfer from cytochrome c2 to the reaction center in Rhodobacter sphaeroides
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journal
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November 1994 |
Kinetics of H+ ion binding by the P+QA-state of bacterial photosynthetic reaction centers: rate limitation within the protein
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July 1997 |
Protonated Rhodosemiquinone at the QB Binding Site of the M265IT Mutant Reaction Center of Photosynthetic Bacterium Rhodobacter sphaeroides
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March 2015 |
MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
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journal
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October 2015 |
Light-induced proton uptake by photosynthetic reaction centers from Rhodobacter sphaeroides R-26. I. Protonation of the one-electron states D+QA−, DQA−, D+QAQB−, and DQAQB−
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July 1988 |
Exploring Graph Traversal Algorithms in Graph-Based Molecular Generation
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November 2021 |
Possible molecular mechanisms of the protonmotive function of cytochrome systems
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October 1976 |
Light-induced quinone reduction in photosystem II
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January 2012 |
Activated Q-cycle as a common mechanism for cytochrome bc1 and cytochrome b6f complexes
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December 2010 |
Simulation of activation free energies in molecular systems
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August 1996 |
Proton Transfer in Reaction Centers from Photosynthetic Bacteria
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June 1992 |
Proton and electron transfer in bacterial reaction centers
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May 2000 |
Pathway of proton transfer in bacterial reaction centers: replacement of glutamic acid 212 in the L subunit by glutamine inhibits quinone (secondary acceptor) turnover
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September 1989 |
Pathway of proton transfer in bacterial reaction centers: replacement of serine-L223 by alanine inhibits electron and proton transfers associated with reduction of quinone to dihydroquinone.
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September 1990 |
Pathway of Proton Transfer in Bacterial Reaction Centers: Role of Aspartate-L213 in Proton Transfers Associated with Reduction of Quinone to Dihydroquinone
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January 1994 |
Pathway of Proton Transfer in Bacterial Reaction Centers: Further Investigations on the Role of Ser-L223 Studied by Site-Directed Mutagenesis
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December 1995 |
Identification of the proton pathway in bacterial reaction centers: Replacement of Asp-M17 and Asp-L210 with Asn reduces the proton transfer rate in the presence of Cd 2+
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February 2000 |
Identification of the Proton Pathway in Bacterial Reaction Centers: Cooperation between Asp-M17 and Asp-L210 Facilitates Proton Transfer to the Secondary Quinone (QB)
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journal
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May 2001 |
Proton transfer pathways and mechanism in bacterial reaction centers
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journal
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October 2003 |
Missing Pieces in the Puzzle of Biological Water Oxidation
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journal
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September 2018 |
Electrostatics of the photosynthetic bacterial reaction center. Protonation of Glu L 212 and Asp L 213 — A new method of calculation
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journal
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December 2015 |
Energetics of Electron-Transfer and Protonation Reactions of the Quinones in the Photosynthetic Reaction Center of Rhodopseudomonas viridis
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February 1998 |
Electron Transfer between the Quinones in the Photosynthetic Reaction Center and Its Coupling to Conformational Changes †
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journal
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August 2000 |
The quinone chemistry of bc complexes
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journal
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July 2004 |
Kinetics of the oxidation-reduction reactions of the photosystem II quinone acceptor complex, and the pathway for deactivation
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journal
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March 1983 |
Pathway of proton transfer in bacterial reaction centers: second-site mutation Asn-M44-->Asp restores electron and proton transfer in reaction centers from the photosynthetically deficient Asp-L213-->Asn mutant of Rhodobacter sphaeroides.
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journal
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February 1993 |
Functional Water Wires Catalyze Long-Range Proton Pumping in the Mammalian Respiratory Complex I
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December 2020 |
Mechanism of proton-coupled quinone reduction in Photosystem II
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journal
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December 2012 |
Structurally conserved channels in cyanobacterial and plant photosystem II
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journal
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February 2017 |
Electronic Connection Between the Quinone and Cytochrome c Redox Pools and Its Role in Regulation of Mitochondrial Electron Transport and Redox Signaling
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January 2015 |
Electrostatic Dominoes: Long Distance Propagation of Mutational Effects in Photosynthetic Reaction Centers of Rhodobacter capsulatus
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July 1995 |
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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November 2003 |
The Structure of Photosystem II and the Mechanism of Water Oxidation in Photosynthesis
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April 2015 |
Bridge: A Graph-Based Algorithm to Analyze Dynamic H-Bond Networks in Membrane Proteins
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journal
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October 2019 |
MCCE2: Improving protein p K a calculations with extensive side chain rotamer sampling
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journal
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January 2009 |
Light-Induced Structural Changes in Photosynthetic Reaction Center: Implications for Mechanism of Electron-Proton Transfer
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May 1997 |
Proton Solvation and Transport in Aqueous and Biomolecular Systems: Insights from Computer Simulations
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May 2007 |
Proton and electron transfer in the acceptor quinone complex of Rhodobacter sphaeroides reaction centers: characterization of site-directed mutants of the two ionizable residues, GluL212 and AspL213, in the QB binding site
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journal
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January 1992 |
Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å
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journal
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April 2011 |
Effects of Temperature and ΔG° on Electron Transfer from Cytochrome c2 to the Photosynthetic Reaction Center of the Purple Bacterium Rhodobacter sphaeroides
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journal
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June 1998 |
Progress Toward a Molecular Mechanism of Water Oxidation in Photosystem II
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May 2017 |
The ATP synthase: the understood, the uncertain and the unknown
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January 2013 |
Primary structure of the reaction center fromRhodopseudomonas sphaeroides
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April 1986 |
Proton and electron transfer in the acceptor quinone complex of photosynthetic reaction centers from Rhodobacter Sphaeroides
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journal
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January 2004 |
Chance and design—Proton transfer in water, channels and bioenergetic proteins
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journal
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August 2006 |
Characterizing the Water Wire in the Gramicidin Channel Found by Monte Carlo Sampling Using Continuum Electrostatics and in Molecular Dynamics Trajectories with Conventional or Polarizable Force Fields
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July 2020 |