Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Diverse MarR bacterial regulators of auxin catabolism in the plant microbiome

Journal Article · · Nat. Microbio.
Research Organization:
Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)
Sponsoring Organization:
DOE - Office Of Science; NIH
OSTI ID:
1902365
Journal Information:
Nat. Microbio., Journal Name: Nat. Microbio. Vol. 7
Country of Publication:
United States
Language:
ENGLISH

References (61)

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 journal December 2014
Product-Mediated Regulation of Pentalenolactone Biosynthesis in Streptomyces Species by the MarR/SlyA Family Activators PenR and PntR journal January 2013
Root microbiota drive direct integration of phosphate stress and immunity journal March 2017
Functional Characterization of the Bacterial iac Genes for Degradation of the Plant Hormone Indole-3-Acetic Acid journal July 2013
nhmmer: DNA homology search with profile HMMs journal July 2013
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability journal January 2013
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes journal December 1995
Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases journal July 2015
Interactions between Plants and Epiphytic Bacteria Regarding Their Auxin Metabolism. V. Isolation and Identification of the IAA-Producing and Destroying Bacteria from Pea Plants journal January 1969
MarR family transcription factors: dynamic variations on a common scaffold journal July 2017
Specific modulation of the root immune system by a community of commensal bacteria journal April 2021
Multiple plant hormone catabolism activities: an adaptation to a plant‐associated lifestyle by Achromobacter spp. journal July 2021
Bacterial Dissimilation of Indoleacetic Acid: a New Route of Breakdown of the Indole Nucleus journal May 1958
Discovery of a bacterial gene cluster for catabolism of the plant hormone indole 3-acetic acid: Genes in Pseudomonas putida 1290 for the degradation of IAA journal August 2008
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins journal December 2004
Absolute quantitation of microbiota abundance in environmental samples collection January 2018
Phaser crystallographic software journal July 2007
REFMAC 5 for the refinement of macromolecular crystal structures journal March 2011
The Plant Microbiome: From Ecology to Reductionism and Beyond journal September 2020
TcaR, a Putative MarR-Like Regulator of sarS Expression journal May 2004
Catabolism of indole-3-acetic acid and 4- and 5-chloroindole-3-acetic acid in Bradyrhizobium japonicum journal October 1995
Elucidating Bacterial Gene Functions in the Plant Microbiome journal October 2018
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R journal July 2018
Auxin: small molecule, big impact journal January 2018
Search and clustering orders of magnitude faster than BLAST journal August 2010
Plant–microbiome interactions: from community assembly to plant health journal August 2020
Identification and characterization of an indigo-producing oxygenase involved in indole 3-acetic acid utilization by Acinetobacter baumannii journal February 2012
Mechanisms in plant–microbiome interactions: lessons from model systems journal August 2021
Regulation of seedling growth by ethylene and the ethylene–auxin crosstalk journal February 2017
Bioconversion of Biologically Active Indole Derivatives with Indole-3-Acetic Acid-Degrading Enzymes from Caballeronia glathei DSM50014 journal April 2020
Biochemical and Genetic Bases of Indole-3-Acetic Acid (Auxin Phytohormone) Degradation by the Plant-Growth-Promoting Rhizobacterium Paraburkholderia phytofirmans PsJN journal January 2017
Linking development to defense: auxin in plant–pathogen interactions journal July 2009
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix journal October 2019
Indole-3-acetic acid biosynthesis and its regulation in plant-associated bacteria journal September 2020
Auxin Biosynthesis and Its Role in Plant Development journal June 2010
Fast gapped-read alignment with Bowtie 2 journal March 2012
Anaerobic Metabolism of Indoleacetate journal June 2012
Structural characterization of the DNA-binding mechanism underlying the copper(II)-sensing MarR transcriptional regulator journal January 2017
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database journal November 2019
Molecular Mechanisms of Ligand-Mediated Attenuation of DNA Binding by MarR Family Transcriptional Regulators journal August 2010
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads journal February 2019
Transcriptional regulation of the iac locus from Acinetobacter baumannii by the phytohormone indole-3-acetic acid journal March 2015
Absolute quantitation of microbiota abundance in environmental samples journal June 2018
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments journal March 2010
XDS journal January 2010
iac Gene Expression in the Indole-3-Acetic Acid-Degrading Soil Bacterium Enterobacter soli LF7 journal October 2018
An allelic exchange system for compliant genetic manipulation of the select agents Burkholderia pseudomallei and Burkholderia mallei journal February 2009
Hormones as go‐betweens in plant microbiome assembly journal January 2021
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans journal April 1979
How good are my data and what is the resolution? journal June 2013
Genomic features of bacterial adaptation to plants journal December 2017
Bridging the Gap Between Single-Strain and Community-Level Plant-Microbe Chemical Interactions journal February 2020
Colorimetric Estimation of Indoleacetic acid journal January 1951
Dual Role of OhrR as a Repressor and an Activator in Response to Organic Hydroperoxides in Streptomyces coelicolor journal June 2007
The Plant Growth-Promoting Rhizobacterium Variovorax boronicumulans CGMCC 4969 Regulates the Level of Indole-3-Acetic Acid Synthesized from Indole-3-Acetonitrile journal August 2018
A single bacterial genus maintains root growth in a complex microbiome journal September 2020
Dealing with the unknown: Metabolomics and Metabolite Atlases journal September 2010
Utilization of the Plant Hormone Indole-3-Acetic Acid for Growth by Pseudomonas putida Strain 1290 journal May 2005
MT-Toolbox: improved amplicon sequencing using molecule tags journal August 2014
Bacterial catabolism of indole-3-acetic acid journal October 2020
Stressed Out About Hormones: How Plants Orchestrate Immunity journal August 2019

Similar Records

Diverse MarR bacterial regulators of auxin catabolism in the plant microbiome
Journal Article · 2022 · Nature Microbiology · OSTI ID:1894181

Elucidating Bacterial Gene Functions in the Plant Microbiome
Journal Article · 2018 · Cell Host & Microbe · OSTI ID:1570011

Related Subjects