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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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journal
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December 2014 |
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MultiQC: summarize analysis results for multiple tools and samples in a single report
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journal
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June 2016 |
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Tools for integrated sequence-structure analysis with UCSF Chimera
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journal
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July 2006 |
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FIMO: scanning for occurrences of a given motif
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journal
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February 2011 |
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Regulation of the osteoblast-specific transcription factor Osterix by NO66, a Jumonji family histone demethylase
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journal
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November 2009 |
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The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
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journal
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March 2007 |
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Software for Computing and Annotating Genomic Ranges
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journal
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August 2013 |
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Features and development of Coot
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journal
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March 2010 |
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Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
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journal
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May 2006 |
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Two repeated motifs enriched within some enhancers and origins of replication are bound by SETMAR isoforms in human colon cells
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journal
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May 2021 |
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Which transposable elements are active in the human genome?
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journal
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April 2007 |
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PHENIX: a comprehensive Python-based system for macromolecular structure solution
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journal
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January 2010 |
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Molecular evolution of an ancient mariner transposon, Hsmarl, in the human genome
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journal
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December 1997 |
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The Primate-Specific Gene TMEM14B Marks Outer Radial Glia Cells and Promotes Cortical Expansion and Folding
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journal
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November 2017 |
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HKL -3000: the integration of data reduction and structure solution – from diffraction images to an initial model in minutes
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journal
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July 2006 |
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SETMAR isoforms in glioblastoma: A matter of protein stability
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journal
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December 2016 |
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Positional distribution of human transcription factor binding sites
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journal
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October 2008 |
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Molecular domestication of transposable elements: From detrimental parasites to useful host genes
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journal
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January 2009 |
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Phaser crystallographic software
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journal
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July 2007 |
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Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
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journal
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August 2011 |
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The Human SETMAR Protein Preserves Most of the Activities of the Ancestral Hsmar1 Transposase
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journal
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February 2007 |
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A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
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journal
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October 1999 |
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Crystallization of and selenomethionine phasing strategy for a SETMAR–DNA complex
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journal
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August 2016 |
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The SET domain protein Metnase mediates foreign DNA integration and links integration to nonhomologous end-joining repair
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journal
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December 2005 |
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GADEM: A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery
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journal
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February 2009 |
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clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
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journal
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May 2012 |
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The roles of the human SETMAR (Metnase) protein in illegitimate DNA recombination and non-homologous end joining repair
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journal
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August 2019 |
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STAR: ultrafast universal RNA-seq aligner
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journal
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October 2012 |
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A Molecular Phylogeny of Living Primates
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journal
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March 2011 |
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Crystal Structure of the Human Hsmar1-Derived Transposase Domain in the DNA Repair Enzyme Metnase,
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journal
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June 2010 |
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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
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journal
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November 2011 |
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Tissue-based map of the human proteome
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journal
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January 2015 |
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Human SETMAR is a DNA sequence-specific histone-methylase with a broad effect on the transcriptome
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journal
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October 2018 |
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rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
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journal
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December 2014 |
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MOODS: fast search for position weight matrix matches in DNA sequences
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journal
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September 2009 |
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The Ancient mariner Sails Again: Transposition of the Human Hsmar1 Element by a Reconstructed Transposase and Activities of the SETMAR Protein on Transposon Ends
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journal
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June 2007 |
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Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation
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journal
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August 2017 |
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XDS
|
journal
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January 2010 |
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NSD2 Links Dimethylation of Histone H3 at Lysine 36 to Oncogenic Programming
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journal
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November 2011 |
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Emerging Technologies to Map the Protein Methylome
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journal
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October 2014 |
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NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets
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journal
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January 2013 |
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Functional roles of non-coding Y RNAs
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journal
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September 2015 |
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CTCF-Mediated Chromatin Loops between Promoter and Gene Body Regulate Alternative Splicing across Individuals
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journal
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December 2017 |
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Biochemical Characterization of a SET and Transposase Fusion Protein, Metnase: Its DNA Binding and DNA Cleavage Activity
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journal
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September 2007 |
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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
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journal
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November 2013 |
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Delineation of known and new transcript variants of the SETMAR (Metnase) gene and the expression profile in hematologic neoplasms
|
journal
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June 2014 |
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Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity
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journal
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September 2013 |
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PAVIS: a tool for Peak Annotation and Visualization
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journal
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September 2013 |
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The small members of the JMJD protein family: Enzymatic jewels or jinxes?
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journal
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April 2019 |
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Genome-wide mapping of binding sites of the transposase-derived SETMAR protein in the human genome
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journal
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January 2021 |
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Metnase promotes restart and repair of stalled and collapsed replication forks
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journal
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May 2010 |
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Lysine Methylation Regulators Moonlighting outside the Epigenome
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journal
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September 2019 |
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Genome engineering using the CRISPR-Cas9 system
|
journal
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October 2013 |
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Alternative splicing as a regulator of development and tissue identity
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journal
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May 2017 |
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The DDN Catalytic Motif Is Required for Metnase Functions in Non-homologous End Joining (NHEJ) Repair and Replication Restart
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journal
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April 2014 |
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A Proteomic Strategy Identifies Lysine Methylation of Splicing Factor snRNP70 by the SETMAR Enzyme
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journal
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May 2015 |
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Metnase mediates chromosome decatenation in acute leukemia cells
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journal
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August 2009 |