Taf2 mediates DNA binding of Taf14

Klein, Brianna J.; Feigerle, Jordan T.; Zhang, Jibo; Ebmeier, Christopher C.; Fan, Lixin; Singh, Rohit K.; Wang, Wesley W.; Schmitt, Lauren R.; Lee, Thomas; Hansen, Kirk C.; Liu, Wenshe R.; Wang, Yun-Xing; Strahl, Brian D.; Anthony, P.; Kutateladze, Tatiana G.

doi:10.1038/s41467-022-30937-w

Taf2 mediates DNA binding of Taf14

Journal Article · 01 June 2022 · Nat. Commun.

DOI:https://doi.org/10.1038/s41467-022-30937-w· OSTI ID:1901158

Klein, Brianna J.; Feigerle, Jordan T.; Zhang, Jibo; Ebmeier, Christopher C.; Fan, Lixin; Singh, Rohit K.; Wang, Wesley W.; Schmitt, Lauren R.; Lee, Thomas; Hansen, Kirk C.; Liu, Wenshe R.; Wang, Yun-Xing; Strahl, Brian D.; Anthony, P.; Kutateladze, Tatiana G.

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; NIH

OSTI ID:: 1901158

Journal Information:: Nat. Commun., Journal Name: Nat. Commun. Vol. 13

Country of Publication:: United States

Language:: ENGLISH

References (33)

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex Robinson, Philip J.; Trnka, Michael J.; Bushnell, David A. Cell, Vol. 166, Issue 6 https://doi.org/10.1016/j.cell.2016.08.050	journal	September 2016
Molecular structure of promoter-bound yeast TFIID Kolesnikova, Olga; Ben-Shem, Adam; Luo, Jie Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07096-y	journal	November 2018
The essential role of acetyllysine binding by the YEATS domain in transcriptional regulation Andrews, Forest H.; Shanle, Erin K.; Strahl, Brian D. Transcription, Vol. 7, Issue 1 https://doi.org/10.1080/21541264.2015.1125987	journal	January 2016
Features and development of Coot Emsley, P.; Lohkamp, B.; Scott, W. G. Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4 https://doi.org/10.1107/S0907444910007493	journal	March 2010
[20] Processing of X-ray diffraction data collected in oscillation mode Otwinowski, Zbyszek; Minor, Wladek Macromolecular Crystallography Part A, 307-326 https://doi.org/10.1016/S0076-6879(97)76066-X	book	January 1997
Taf14 recognizes a common motif in transcriptional machineries and facilitates their clustering by phase separation Chen, Guochao; Wang, Duo; Wu, Bin Nature Communications, Vol. 11, Issue 1 https://doi.org/10.1038/s41467-020-18021-7	journal	August 2020
Single-pot, solid-phase-enhanced sample preparation for proteomics experiments Hughes, Christopher S.; Moggridge, Sophie; Müller, Torsten Nature Protocols, Vol. 14, Issue 1 https://doi.org/10.1038/s41596-018-0082-x	journal	November 2018
PHENIX: a comprehensive Python-based system for macromolecular structure solution Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221 https://doi.org/10.1107/S0907444909052925	journal	January 2010
The Histone-H3K4-Specific Demethylase KDM5B Binds to Its Substrate and Product through Distinct PHD Fingers Klein, Brianna J.; Piao, Lianhua; Xi, Yuanxin Cell Reports, Vol. 6, Issue 2 https://doi.org/10.1016/j.celrep.2013.12.021	journal	January 2014
TFG/TAF30/ANC1, a component of the yeast SWI/SNF complex that is similar to the leukemogenic proteins ENL and AF-9 Cairns, B. R.; Henry, N. L.; Kornberg, R. D. Molecular and Cellular Biology, Vol. 16, Issue 7 https://doi.org/10.1128/MCB.16.7.3308	journal	July 1996
Structural insights into the π-π-π stacking mechanism and DNA-binding activity of the YEATS domain Klein, Brianna J.; Vann, Kendra R.; Andrews, Forest H. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07072-6	journal	November 2018
Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae Zhang, Wen; Zhang, Jiahai; Zhang, Xuecheng Biochemical Journal, Vol. 436, Issue 1 https://doi.org/10.1042/BJ20110004	journal	April 2011
Recognition of acetylated histone by Yaf9 regulates metabolic cycling of transcription initiation and chromatin regulatory factors Zhang, Jibo; Gundu, Aakanksha; Strahl, Brian D. Genes & Development, Vol. 35, Issue 23-24 https://doi.org/10.1101/gad.348904.121	journal	November 2021
H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation Lauberth, Shannon M.; Nakayama, Takahiro; Wu, Xiaolin Cell, Vol. 152, Issue 5 https://doi.org/10.1016/j.cell.2013.01.052	journal	February 2013
Reading More than Histones: The Prevalence of Nucleic Acid Binding among Reader Domains Weaver, Tyler; Morrison, Emma; Musselman, Catherine Molecules, Vol. 23, Issue 10 https://doi.org/10.3390/molecules23102614	journal	October 2018
The C Terminus of the RNA Polymerase II Transcription Factor IID (TFIID) Subunit Taf2 Mediates Stable Association of Subunit Taf14 into the Yeast TFIID Complex Feigerle, Jordan T.; Weil, P. Anthony Journal of Biological Chemistry, Vol. 291, Issue 43 https://doi.org/10.1074/jbc.M116.751107	journal	September 2016
NADPH oxidase activator p67phox behaves in solution as a multidomain protein with semi-flexible linkers Durand, Dominique; Vivès, Corinne; Cannella, Dominique Journal of Structural Biology, Vol. 169, Issue 1 https://doi.org/10.1016/j.jsb.2009.08.009	journal	January 2010
The Something About Silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF_II30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)–FACT complex John, Sam; Howe, LeAnn; Tafrov, Stefan T. Genes & Development, Vol. 14, Issue 10 https://doi.org/10.1101/gad.14.10.1196	journal	May 2000
Anc1 interacts with the catalytic subunits of the general transcription factors TFIID and TFIIF, the chromatin remodeling complexes RSC and INO80, and the histone acetyltransferase complex NuA3 Kabani, Mehdi; Michot, Katia; Boschiero, Claire Biochemical and Biophysical Research Communications, Vol. 332, Issue 2 https://doi.org/10.1016/j.bbrc.2005.04.158	journal	July 2005
TFIIF-TAF-RNA polymerase II connection. Henry, N. L.; Campbell, A. M.; Feaver, W. J. Genes & Development, Vol. 8, Issue 23 https://doi.org/10.1101/gad.8.23.2868	journal	December 1994
Association of Taf14 with acetylated histone H3 directs gene transcription and the DNA damage response Shanle, Erin K.; Andrews, Forest H.; Meriesh, Hashem Genes & Development, Vol. 29, Issue 17 https://doi.org/10.1101/gad.269977.115	journal	September 2015
The YEATS domain of Taf14 in Saccharomyces cerevisiae has a negative impact on cell growth Schulze, Julia M.; Kane, Caroline M.; Ruiz-Manzano, Ana Molecular Genetics and Genomics, Vol. 283, Issue 4 https://doi.org/10.1007/s00438-010-0523-x	journal	February 2010
Identification and characterization of a TFIID-like multiprotein complex from Saccharomyces cerevisiae. Poon, D.; Bai, Y.; Campbell, A. M. Proceedings of the National Academy of Sciences, Vol. 92, Issue 18 https://doi.org/10.1073/pnas.92.18.8224	journal	August 1995
Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4 Vermeulen, Michiel; Mulder, Klaas W.; Denissov, Sergei Cell, Vol. 131, Issue 1 https://doi.org/10.1016/j.cell.2007.08.016	journal	October 2007
Yaf9 subunit of the NuA4 and SWR1 complexes targets histone H3K27ac through its YEATS domain Klein, Brianna J.; Ahmad, Salar; Vann, Kendra R. Nucleic Acids Research, Vol. 46, Issue 1 https://doi.org/10.1093/nar/gkx1151	journal	November 2017
Structure of promoter-bound TFIID and model of human pre-initiation complex assembly Louder, Robert K.; He, Yuan; López-Blanco, José Ramón Nature, Vol. 531, Issue 7596 https://doi.org/10.1038/nature17394	journal	March 2016
Mediator binding toUASs is broadly uncoupled from transcription and cooperative withTFIIDrecruitment to promoters Grünberg, Sebastian; Henikoff, Steven; Hahn, Steven The EMBO Journal, Vol. 35, Issue 22 https://doi.org/10.15252/embj.201695020	journal	October 2016
Structure and Function of a Human TAF _II 250 Double Bromodomain Module Jacobson, Raymond H.; Ladurner, Andreas G.; King, David S. Science, Vol. 288, Issue 5470 https://doi.org/10.1126/science.288.5470.1422	journal	May 2000
The Taf14 YEATS domain is a reader of histone crotonylation Andrews, Forest H.; Shinsky, Stephen A.; Shanle, Erin K. Nature Chemical Biology, Vol. 12, Issue 6 https://doi.org/10.1038/nchembio.2065	journal	April 2016
Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression Gowans, Graeme J.; Bridgers, Joseph B.; Zhang, Jibo Molecular Cell, Vol. 76, Issue 6 https://doi.org/10.1016/j.molcel.2019.09.029	journal	December 2019
Accessibility of the histone H3 tail in the nucleosome for binding of paired readers Gatchalian, Jovylyn; Wang, Xiaodong; Ikebe, Jinzen Nature Communications, Vol. 8, Issue 1 https://doi.org/10.1038/s41467-017-01598-x	journal	November 2017
Bromodomain factor 1 corresponds to a missing piece of yeast TFIID Matangkasombut, Oranart; Buratowski, Robin M.; Swilling, Nathan W. Genes & Development, Vol. 14, Issue 8 https://doi.org/10.1101/gad.14.8.951	journal	April 2000
Genome-wide structure and organization of eukaryotic pre-initiation complexes Rhee, Ho Sung; Pugh, B. Franklin Nature, Vol. 483, Issue 7389 https://doi.org/10.1038/nature10799	journal	January 2012

Similar Records

Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis

Journal Article · 2009 · Nat. Struct. Mol. Biol. · OSTI ID:1005597

Properties of the ultraviolet-light-mediated binding of bovine serum albumin to DNA

Journal Article · 1974 · Photochem. Photobiol., v. 21, pp. 243-247 · OSTI ID:4183554

Extended HSR/CARD domain mediates AIRE binding to DNA

Journal Article · 2015 · Biochemical and Biophysical Research Communications · OSTI ID:22594152

Taf2 mediates DNA binding of Taf14

Citation Formats

References (33)

Similar Records

Related Subjects