The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and

Phillips, Robert S.; Hoang, Kim-Ngoc Nguyen

doi:10.1016/j.abb.2022.109429

The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and

Journal Article · 01 November 2022 · Arch. Biochem. Biophys.

DOI:https://doi.org/10.1016/j.abb.2022.109429· OSTI ID:1901117

Phillips, Robert S.; Hoang, Kim-Ngoc Nguyen

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; NIH

OSTI ID:: 1901117

Journal Information:: Arch. Biochem. Biophys., Journal Name: Arch. Biochem. Biophys. Vol. 731

Country of Publication:: United States

Language:: ENGLISH

References (21)

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product Shyp, Viktoriya; Tankov, Stoyan; Ermakov, Andrey EMBO reports, Vol. 13, Issue 9 https://doi.org/10.1038/embor.2012.106	journal	July 2012
Evolution of Substrate Specificity within a Diverse Family of β/α-Barrel-fold Basic Amino Acid Decarboxylases Deng, Xiaoyi; Lee, Jeongmi; Michael, Anthony J. Journal of Biological Chemistry, Vol. 285, Issue 33 https://doi.org/10.1074/jbc.M110.121137	journal	August 2010
Paired refinement under the control ofPAIREF Malý, Martin; Diederichs, Kay; Dohnálek, Jan IUCrJ, Vol. 7, Issue 4 https://doi.org/10.1107/S2052252520005916	journal	June 2020
Spectrophotometric assay for lysine decar☐ylase Phan, A. P. H.; Ngo, T. T.; Lenhoff, H. M. Analytical Biochemistry, Vol. 120, Issue 1 https://doi.org/10.1016/0003-2697(82)90336-0	journal	February 1982
Crystal Structure of d -Ornithine/ d -Lysine Decarboxylase, a Stereoinverting Decarboxylase: Implications for Substrate Specificity and Stereospecificity of Fold III Decarboxylases Phillips, Robert S.; Poteh, Pafe; Krajcovic, Donovan Biochemistry, Vol. 58, Issue 8 https://doi.org/10.1021/acs.biochem.8b01319	journal	January 2019
An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol Liu, Huanting; Naismith, James H. BMC Biotechnology, Vol. 8, Issue 1 https://doi.org/10.1186/1472-6750-8-91	journal	January 2008
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007
Linking Crystallographic Model and Data Quality Karplus, P. A.; Diederichs, K. Science, Vol. 336, Issue 6084 https://doi.org/10.1126/science.1218231	journal	May 2012
Multiple evolutionary origin of pyridoxal-5'-phosphate-dependent amino acid decarboxylases Sandmeier, Erika; Hale, Terence I.; Christen, Philipp European Journal of Biochemistry, Vol. 221, Issue 3 https://doi.org/10.1111/j.1432-1033.1994.tb18816.x	journal	May 1994
Protein production by auto-induction in high-density shaking cultures Studier, F. William Protein Expression and Purification, Vol. 41, Issue 1, p. 207-234 https://doi.org/10.1016/j.pep.2005.01.016	journal	May 2005
Sensing and Adaptation to Low pH Mediated by Inducible Amino Acid Decarboxylases in Salmonella Viala, Julie P. M.; Méresse, Stéphane; Pocachard, Bérengère PLoS ONE, Vol. 6, Issue 7 https://doi.org/10.1371/journal.pone.0022397	journal	July 2011
Regulation of the Catabolic Ornithine Carbamoyltransferase of Pseudomonas fluorescens. A Study of the Allosteric Interactions Stalon, Victor European Journal of Biochemistry, Vol. 29, Issue 1 https://doi.org/10.1111/j.1432-1033.1972.tb01954.x	journal	August 1972
Crystal structure and biochemical properties of putrescine carbamoyltransferase fromEnterococcus faecalis: Assembly, active site, and allosteric regulation Shi, Dashuang; Yu, Xiaolin; Zhao, Gengxiang Proteins: Structure, Function, and Bioinformatics, Vol. 80, Issue 5 https://doi.org/10.1002/prot.24042	journal	February 2012
Stereochemistry of the decarboxylation of l-ornithine with ornithine decarboxylase from mouse kidney Orr, Gary R.; Gould, Steven J.; Pegg, Anthony E. Bioorganic Chemistry, Vol. 12, Issue 3 https://doi.org/10.1016/0045-2068(84)90009-9	journal	September 1984
The Catalytic Intermediate Stabilized by a “Down” Active Site Loop for Diaminopimelate Decarboxylase from Helicobacter pylori: ENZYMATIC CHARACTERIZATION WITH CRYSTAL STRUCTURE ANALYSIS Hu, Tiancen; Wu, Dalei; Chen, Jing Journal of Biological Chemistry, Vol. 283, Issue 30 https://doi.org/10.1074/jbc.M801823200	journal	May 2008
Structural Basis for Putrescine Activation of Human S -Adenosylmethionine Decarboxylase Bale, Shridhar; Lopez, Maria M.; Makhatadze, George I. Biochemistry, Vol. 47, Issue 50 https://doi.org/10.1021/bi801732m	journal	November 2008
Altering the Reaction Specificity of Eukaryotic Ornithine Decarboxylase ^† ^, ^‡ Jackson, Laurie K.; Brooks, Harold B.; Osterman, Andrei L. Biochemistry, Vol. 39, Issue 37 https://doi.org/10.1021/bi001209s	journal	September 2000
Ornithine Decarboxylase Promotes Catalysis by Binding the Carboxylate in a Buried Pocket Containing Phenylalanine 397 Jackson, Laurie K.; Brooks, Harold B.; Myers, David P. Biochemistry, Vol. 42, Issue 10 https://doi.org/10.1021/bi026795z	journal	February 2003
Improved statistics for determining the Patterson symmetry from unmerged diffraction intensities Sauter, Nicholas K.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 39, Issue 2 https://doi.org/10.1107/S0021889805042299	journal	March 2006
STM2360 encodes a d-ornithine/d-lysine decarboxylase in Salmonella enterica serovar typhimurium Phillips, Robert S.; Poteh, Pafe; Miller, Katherine A. Archives of Biochemistry and Biophysics, Vol. 634 https://doi.org/10.1016/j.abb.2017.09.010	journal	November 2017
An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium Kröger, Carsten; Colgan, Aoife; Srikumar, Shabarinath Cell Host & Microbe, Vol. 14, Issue 6 https://doi.org/10.1016/j.chom.2013.11.010	journal	December 2013

Similar Records

The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and a putrescine allosteric activation site

Journal Article · 2022 · Archives of Biochemistry and Biophysics · OSTI ID:1896561

Crystal Structure of d-Ornithine/d-Lysine Decarboxylase, a Stereoinverting Decarboxylase: Implications for Substrate Specificity and Stereospecificity of Fold III Decarboxylases

Journal Article · 2019 · Biochemistry · OSTI ID:1504969

Superinduction of ornithine decarboxylase by Actinomycin D and Cordycepin

Journal Article · 1978 · Biochem. Biophys. Res. Commun.; (United States) · OSTI ID:6789944

The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and

Citation Formats

References (21)

Similar Records

Related Subjects