skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: The low-resolution structural models of hepatitis C virus RNA subdomain 5BSL3.2 and its distal compl

Journal Article · · Nucleic Acids Res.
DOI:· OSTI ID:1901114

Research Organization:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
DOE - Office Of Science; NCI
Journal Information:
Nucleic Acids Res., Vol. 50, Issue (4)
Country of Publication:
United States

References (52)

Comparing SARS-CoV-2 with SARS-CoV and influenza pandemics journal September 2020
Functional long-range RNA–RNA interactions in positive-strand RNA viruses journal June 2014
Challenges and Promise of a Hepatitis C Virus Vaccine journal September 2019
The 5BSL3.2 Functional RNA Domain Connects Distant Regions in the Hepatitis C Virus Genome journal October 2017
A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome journal July 2009
Hepatitis C virus RNA: molecular switches mediated by long-range RNA–RNA interactions? journal December 2012
Kissing-Loop Interaction in the 3′ End of the Hepatitis C Virus Genome Essential for RNA Replication journal January 2005
3′ RNA Elements in Hepatitis C Virus Replication: Kissing Partners and Long Poly(U) journal October 2007
A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication journal May 2012
An unexpected RNA distal interaction mode found in an essential region of the hepatitis C virus genome journal February 2018
Structure and function analysis of the essential 3′X domain of hepatitis C virus journal November 2019
A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B journal July 2008
A cis -Acting Replication Element in the Sequence Encoding the NS5B RNA-Dependent RNA Polymerase Is Required for Hepatitis C Virus RNA Replication journal February 2004
The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation journal May 2011
Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution journal July 2015
Base pairing between hepatitis C virus RNA and 18S rRNA is required for IRES-dependent translation initiation in vivo journal October 2014
The hepatitis C virus Core protein is a potent nucleic acid chaperone that directs dimerization of the viral (+) strand RNA in vitro journal April 2004
Analysis of hepatitis C virus RNA dimerization and core-RNA interactions journal January 2006
The conserved 3′X terminal domain of hepatitis C virus genomic RNA forms a two-stem structure that promotes viral RNA dimerization journal August 2015
Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3′ X-tail journal February 2015
Genetic Organization and Diversity of the 3′ Noncoding Region of the Hepatitis C Virus Genome journal September 1996
Replication of Subgenomic Hepatitis C Virus RNAs in a Hepatoma Cell Line journal July 1999
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data journal March 2008
VARNA: Interactive drawing and editing of the RNA secondary structure journal April 2009
PRIMUS: a Windows PC-based system for small-angle scattering data analysis journal September 2003
Determination of the regularization parameter in indirect-transform methods using perceptual criteria journal August 1992
Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale journal December 2009
Accurate assessment of mass, models and resolution by small-angle scattering journal April 2013
New developments in the ATSAS program package for small-angle scattering data analysis journal March 2012
Restoring Low Resolution Structure of Biological Macromolecules from Solution Scattering Using Simulated Annealing journal June 1999
Automated matching of high- and low-resolution structural models journal February 2001
Uniqueness of ab initio shape determination in small-angle scattering journal April 2003
NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy journal December 2014
SimRNAweb: a web server for RNA 3D structure modeling with optional restraints journal April 2016
FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles journal May 2016
An overview of the Amber biomolecular simulation package: Amber biomolecular simulation package
  • Salomon-Ferrer, Romelia; Case, David A.; Walker, Ross C.
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 3, Issue 2
journal September 2012
MolProbity: More and better reference data for improved all-atom structure validation: PROTEIN SCIENCE.ORG journal November 2017
UCSF Chimera?A visualization system for exploratory research and analysis journal January 2004
RNApdbee 2.0: multifunctional tool for RNA structure annotation journal April 2018
Structural basis for RNA replication by the hepatitis C virus polymerase journal February 2015
Identification of a Conserved RNA-dependent RNA Polymerase (RdRp)-RNA Interface Required for Flaviviral Replication journal August 2016
Structures of flavivirus RNA promoters suggest two binding modes with NS5 polymerase journal May 2021
The EMBL-EBI search and sequence analysis tools APIs in 2019 journal April 2019
Low-Temperature NMR Studies on Inosine Wobble Base Pairs journal July 2011
Structural characterization of the highly conserved 98-base sequence at the 3' end of HCV RNA genome and the complementary sequence located at the 5' end of the replicative viral strand journal January 2005
End-to-end crosstalk within the hepatitis C virus genome mediates the conformational switch of the 3′X-tail region journal September 2013
Template Requirements for RNA Synthesis by a Recombinant Hepatitis C Virus RNA-Dependent RNA Polymerase journal December 2000
Inhibition of hepatitis C virus replication by pol III-directed overexpression of RNA decoys corresponding to stem-loop structures in the NS5B coding region journal November 2005
RNA-dependent RNA polymerase of hepatitis C virus binds to its coding region RNA stem-loop structure, 5BSL3.2, and its negative strand journal January 2010
The flavivirus-conserved penta-nucleotide in the 3′ stem-loop of the West Nile virus genome requires a specific sequence and structure for RNA synthesis, but not for viral translation journal January 2005
Template Requirement and Initiation Site Selection by Hepatitis C Virus Polymerase on a Minimal Viral RNA Template journal June 2000
Mutations of the SL2 dimerization sequence of the hepatitis C genome abrogate viral replication journal March 2015

Similar Records

Related Subjects