Development of a GalNAc-Tyrosine-Specific Monoclonal Antibody and Detection of Tyrosine O-GalNAcylat

Xia, Li; Bellomo, Tiffany R.; Gibadullin, Ruslan; Congdon, Molly D.; Edmondson, Elijah F.; Li, Mi; Wlodawer, Alexander; Li, Crystal; Temme, J. Sebastian; Patel, Pavan; Butcher, Donna; Gildersleeve, Jeffrey C.

doi:10.1021/jacs.2c04477

Development of a GalNAc-Tyrosine-Specific Monoclonal Antibody and Detection of Tyrosine O-GalNAcylat

Journal Article · 01 September 2022 · J. Am. Chem. Soc.

DOI:https://doi.org/10.1021/jacs.2c04477· OSTI ID:1900999

Xia, Li; Bellomo, Tiffany R.; Gibadullin, Ruslan; Congdon, Molly D.; Edmondson, Elijah F.; Li, Mi; Wlodawer, Alexander; Li, Crystal; Temme, J. Sebastian; Patel, Pavan; Butcher, Donna; Gildersleeve, Jeffrey C.

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; NIH

OSTI ID:: 1900999

Journal Information:: J. Am. Chem. Soc., Journal Name: J. Am. Chem. Soc. Journal Issue: (36) Vol. 144

Country of Publication:: United States

Language:: ENGLISH

References (39)

Enhanced Mass Spectrometric Mapping of the Human GalNAc-type O-Glycoproteome with SimpleCells Vakhrushev, Sergey Y.; Steentoft, Catharina; Vester-Christensen, Malene B. Molecular & Cellular Proteomics, Vol. 12, Issue 4 https://doi.org/10.1074/mcp.o112.021972	journal	April 2013
A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes Wakui, Hajime; Tanaka, Yoshikazu; Ose, Toyoyuki Chemical Science, Vol. 11, Issue 19 https://doi.org/10.1039/d0sc00317d	journal	January 2020
Protein Glycosylation in Cancer Stowell, Sean R.; Ju, Tongzhong; Cummings, Richard D. Annual Review of Pathology: Mechanisms of Disease, Vol. 10, Issue 1 https://doi.org/10.1146/annurev-pathol-012414-040438	journal	January 2015
Construction and Use of Glycan Microarrays Campbell, Christopher T.; Zhang, Yalong; Gildersleeve, Jeffrey C. Current Protocols in Chemical Biology, Vol. 2, Issue 1 https://doi.org/10.1002/9780470559277.ch090228	journal	February 2010
Characterizing the O-glycosylation landscape of human plasma, platelets, and endothelial cells King, Sarah L.; Joshi, Hiren J.; Schjoldager, Katrine T. Blood Advances, Vol. 1, Issue 7 https://doi.org/10.1182/bloodadvances.2016002121	journal	February 2017
PHENIX: a comprehensive Python-based system for macromolecular structure solution Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221 https://doi.org/10.1107/S0907444909052925	journal	January 2010
Structural analysis and unique molecular recognition properties of a Bauhinia forficata lectin that inhibits cancer cell growth Lubkowski, Jacek; Durbin, Sarah V.; Silva, Mariana C. C. The FEBS Journal, Vol. 284, Issue 3 https://doi.org/10.1111/febs.13989	journal	February 2017
CH−π Interactions in Glycan Recognition Kiessling, Laura L.; Diehl, Roger C. ACS Chemical Biology, Vol. 16, Issue 10 https://doi.org/10.1021/acschembio.1c00413	journal	October 2021
The current structural glycome landscape and emerging technologies Copoiu, Liviu; Malhotra, Sony Current Opinion in Structural Biology, Vol. 62 https://doi.org/10.1016/j.sbi.2019.12.020	journal	June 2020
Synthetic standard aided quantification and structural characterization of amyloid-beta glycopeptides enriched from cerebrospinal fluid of Alzheimer’s disease patients Nilsson, Jonas; Brinkmalm, Gunnar; Ramadan, Sherif Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-41897-5	journal	April 2019
Dismantling the bacterial glycocalyx: Chemical tools to probe, perturb, and image bacterial glycans Luong, Phuong; Dube, Danielle H. Bioorganic & Medicinal Chemistry, Vol. 42 https://doi.org/10.1016/j.bmc.2021.116268	journal	July 2021
Biological roles of glycans Varki, Ajit Glycobiology, Vol. 27, Issue 1 https://doi.org/10.1093/glycob/cww086	journal	August 2016
Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology Steentoft, Catharina; Vakhrushev, Sergey Y.; Joshi, Hiren J. The EMBO Journal, Vol. 32, Issue 10 https://doi.org/10.1038/emboj.2013.79	journal	April 2013
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007
REFMAC 5 for the refinement of macromolecular crystal structures Murshudov, Garib N.; Skubák, Pavol; Lebedev, Andrey A. Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444911001314	journal	March 2011
Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers from Dolichos biflorus 1 1Edited by R. Huber Hamelryck, Thomas W.; Loris, Remy; Bouckaert, Julie Journal of Molecular Biology, Vol. 286, Issue 4 https://doi.org/10.1006/jmbi.1998.2534	journal	March 1999
Distribution of Tn antigen recognized by an anti-Tn monoclonal antibody (MLS128) in normal and malignant tissues of the digestive tract Ohshio, Gakuji; Imamura, Takashi; Imamura, Masayuki Journal of Cancer Research and Clinical Oncology, Vol. 121, Issue 4 https://doi.org/10.1007/bf01366970	journal	April 1995
General Strategies for Glycan Microarray Data Processing and Analysis Temme, J. Sebastian; Gildersleeve, Jeffrey C. Methods in Molecular Biology https://doi.org/10.1007/978-1-0716-2148-6_5	book	January 2022
A Decade of Bioorthogonal Chemistry Bertozzi, Carolyn R. Accounts of Chemical Research, Vol. 44, Issue 9 https://doi.org/10.1021/ar200193f	journal	September 2011
Factors contributing to variability of glycan microarray binding profiles Temme, J. Sebastian; Campbell, Christopher T.; Gildersleeve, Jeffrey C. Faraday Discussions, Vol. 219 https://doi.org/10.1039/c9fd00021f	journal	January 2019
Synthesis aided structural determination of amyloid-β(1–15) glycopeptides, new biomarkers for Alzheimer's disease Wang, Peng; Nilsson, Jonas; Brinkmalm, Gunnar Chem. Commun., Vol. 50, Issue 95 https://doi.org/10.1039/c4cc05085a	journal	January 2014
The GalNAc-type O-Glycoproteome of CHO Cells Characterized by the SimpleCell Strategy Yang, Zhang; Halim, Adnan; Narimatsu, Yoshiki Molecular & Cellular Proteomics, Vol. 13, Issue 12 https://doi.org/10.1074/mcp.m114.041541	journal	December 2014
Natural Antibodies Bridge Innate and Adaptive Immunity Panda, Saswati; Ding, Jeak L. The Journal of Immunology, Vol. 194, Issue 1 https://doi.org/10.4049/jimmunol.1400844	journal	December 2014
[20] Processing of X-ray diffraction data collected in oscillation mode Otwinowski, Zbyszek; Minor, Wladek Macromolecular Crystallography Part A, 307-326 https://doi.org/10.1016/s0076-6879(97)76066-x	book	January 1997
General Procedure for the Synthesis of Neoglycoproteins and Immobilization on Epoxide-Modified Glass Slides Zhang, Yalong; Gildersleeve, Jeffrey C. Methods in Molecular Biology https://doi.org/10.1007/978-1-61779-373-8_11	book	September 2011
Resolving conflicting data on expression of the Tn antigen and implications for clinical trials with cancer vaccines Li, Qian; Anver, Miriam R.; Butcher, Donna O. Molecular Cancer Therapeutics, Vol. 8, Issue 4 https://doi.org/10.1158/1535-7163.mct-08-0934	journal	April 2009
The crystal structure of a plant lectin in complex with the Tn antigen Babino, Alvaro; Tello, Diana; Rojas, Adriana FEBS Letters, Vol. 536, Issue 1-3 https://doi.org/10.1016/s0014-5793(03)00037-1	journal	January 2003
Global view of human protein glycosylation pathways and functions Schjoldager, Katrine T.; Narimatsu, Yoshiki; Joshi, Hiren J. Nature Reviews Molecular Cell Biology, Vol. 21, Issue 12 https://doi.org/10.1038/s41580-020-00294-x	journal	October 2020
Glycans in cancer and inflammation — potential for therapeutics and diagnostics Dube, Danielle H.; Bertozzi, Carolyn R. Nature Reviews Drug Discovery, Vol. 4, Issue 6 https://doi.org/10.1038/nrd1751	journal	June 2005
Circumventing the Problems Caused by Protein Diversity in Microarrays: Implications for Protein Interaction Networks Gordus, Andrew; MacBeath, Gavin Journal of the American Chemical Society, Vol. 128, Issue 42 https://doi.org/10.1021/ja065381g	journal	October 2006
Mining the O-glycoproteome using zinc-finger nuclease–glycoengineered SimpleCell lines Steentoft, Catharina; Vakhrushev, Sergey Y.; Vester-Christensen, Malene B. Nature Methods, Vol. 8, Issue 11 https://doi.org/10.1038/nmeth.1731	journal	October 2011
Coot model-building tools for molecular graphics Emsley, Paul; Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132 https://doi.org/10.1107/S0907444904019158	journal	November 2004
Site-specific characterization of threonine, serine, and tyrosine glycosylations of amyloid precursor protein/amyloid β-peptides in human cerebrospinal fluid Halim, Adnan; Brinkmalm, Gunnar; Rüetschi, Ulla Proceedings of the National Academy of Sciences, Vol. 108, Issue 29 https://doi.org/10.1073/pnas.1102664108	journal	June 2011
Probing the O-Glycoproteome of Gastric Cancer Cell Lines for Biomarker Discovery* Campos, Diana; Freitas, Daniela; Gomes, Joana Molecular & Cellular Proteomics, Vol. 14, Issue 6 https://doi.org/10.1074/mcp.m114.046862	journal	June 2015
Epidermal Growth Factor Receptor in Non–Small-Cell Lung Carcinomas: Correlation Between Gene Copy Number and Protein Expression and Impact on Prognosis Hirsch, Fred R.; Varella-Garcia, Marileila; Bunn, Paul A. Journal of Clinical Oncology, Vol. 21, Issue 20 https://doi.org/10.1200/jco.2003.11.069	journal	October 2003
GalNAcÎ±1-3Gal, a new prognostic marker for cervical cancer Li, Qian; Anver, Miriam R.; Li, Zhitao International Journal of Cancer, Vol. 126, Issue 2 https://doi.org/10.1002/ijc.24716	journal	January 2010
Structural basis for recognition of breast and colon cancer epitopes Tn antigen and Forssman disaccharide by Helix pomatia lectin Lescar, Julien; Sanchez, Jean-Frederic; Audfray, Aymeric Glycobiology, Vol. 17, Issue 10 https://doi.org/10.1093/glycob/cwm077	journal	July 2007
GalNAc-Tyrosine Is a Ligand of Plant Lectins, Antibodies, and Human and Murine Macrophage Galactose-Type Lectins Gibadullin, Ruslan; Farnsworth, David Wayne; Barchi, Joseph J. ACS Chemical Biology, Vol. 12, Issue 8 https://doi.org/10.1021/acschembio.7b00471	journal	July 2017
Perspectives on Anti-Glycan Antibodies Gleaned from Development of a Community Resource Database Sterner, Eric; Flanagan, Natalie; Gildersleeve, Jeffrey C. ACS Chemical Biology, Vol. 11, Issue 7 https://doi.org/10.1021/acschembio.6b00244	journal	May 2016

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